mRNA_M-pyrifera_M_contig117462.3610.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117462.3610.1
Unique NamemRNA_M-pyrifera_M_contig117462.3610.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig117462.3610.1 vs. uniprot
Match: A0A3M2BZ49_9BACT (Alkaline phosphatase family protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3M2BZ49_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 6.790e-7
Identity = 35/96 (36.46%), Postives = 49/96 (51.04%), Query Frame = 1 
Query:   10 QTGISFFLASCR-----TGFLGMEFRRSDSAYKY--ALRVAPTLDFSVMHGDQIYADPVKNSLVGEAFTFPEYCSRYKKAFTTSGITKLFVRSPRH 276
            QTG+ F L SCR      G    +  + D A+K   AL     +DF++M GDQ YADP+  ++V  A T  E+ +RY+K F       L  R P +
Sbjct:  122 QTGLRFVLGSCRYLFWDVGLFHSDAAKGDKAFKSIRALHDQDAIDFTLMVGDQCYADPL--NVVKRASTREEFYARYRKTFDQPHFQDLLSRVPNY 215
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BLAST of mRNA_M-pyrifera_M_contig117462.3610.1 vs. uniprot
Match: A0A4U0ZRS2_9DELT (Alkaline phosphatase family protein n=1 Tax=Desulforhopalus sp. IMCC35007 TaxID=2569543 RepID=A0A4U0ZRS2_9DELT)

HSP 1 Score: 54.7 bits (130), Expect = 1.280e-6
Identity = 35/92 (38.04%), Postives = 49/92 (53.26%), Query Frame = 1 
Query:   16 GISFFLASCRTGFLGMEFRRSDSAYKYAL------RVAPTLDFSVMHGDQIYADPVKNSL-VGEAFTFPEYCSRYKKAFTTSGITKLFVRSP 270
            G+SFFL SC    L  + + SD  ++  L      R      FS+M GDQIYAD +  ++ +G A TF E+ SRY  AF++  + KL    P
Sbjct:  160 GLSFFLGSCHYPGLFWKKKLSDRIFQPMLDQIDKKRFGQQPKFSLMVGDQIYADMLNRNIPIGLADTFEEFQSRYHDAFSSPNLRKLMASLP 251
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BLAST of mRNA_M-pyrifera_M_contig117462.3610.1 vs. uniprot
Match: A0A2H0QZX3_9PROT (Phosphodiesterase n=1 Tax=Alphaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_39_49 TaxID=1973900 RepID=A0A2H0QZX3_9PROT)

HSP 1 Score: 51.6 bits (122), Expect = 1.570e-5
Identity = 29/85 (34.12%), Postives = 46/85 (54.12%), Query Frame = 1 
Query:   19 ISFFLASCRTGFLGMEFRRSDSAYKYALRVAPTLDFSVMHGDQIYADPVKNSL-VGEAFTFPEYCSRYKKAFTTSGITKLFVRSP 270
            +SF L SCR   +  + + +D  +     +   +DF++M GDQIYAD     + VG A T+ E+  RY+ AF++  +  L  R P
Sbjct:  167 VSFLLGSCRYPGIMWKSKEADRIFGPMAAMNDNVDFTLMVGDQIYADLYNRFVPVGLANTYEEFQERYRTAFSSPNMATLLSRVP 251
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117462.3610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A3M2BZ49_9BACT6.790e-736.46Alkaline phosphatase family protein n=1 Tax=Acidob... [more]
A0A4U0ZRS2_9DELT1.280e-638.04Alkaline phosphatase family protein n=1 Tax=Desulf... [more]
A0A2H0QZX3_9PROT1.570e-534.12Phosphodiesterase n=1 Tax=Alphaproteobacteria bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117462contigM-pyrifera_M_contig117462:8..283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815692.4802604-CDS-M-pyrifera_M_contig117462:7..2831622815692.4802604-CDS-M-pyrifera_M_contig117462:7..283Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117462 8..283 -
1692277524.3671958-CDS-M-pyrifera_M_contig117462:7..2831692277524.3671958-CDS-M-pyrifera_M_contig117462:7..283Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117462 8..283 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117462.3610.1prot_M-pyrifera_M_contig117462.3610.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117462 8..283 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117462.3610.1

>prot_M-pyrifera_M_contig117462.3610.1 ID=prot_M-pyrifera_M_contig117462.3610.1|Name=mRNA_M-pyrifera_M_contig117462.3610.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
DKAQTGISFFLASCRTGFLGMEFRRSDSAYKYALRVAPTLDFSVMHGDQI
YADPVKNSLVGEAFTFPEYCSRYKKAFTTSGITKLFVRSPRH
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mRNA from alignment at M-pyrifera_M_contig117462:8..283-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117462.3610.1 ID=mRNA_M-pyrifera_M_contig117462.3610.1|Name=mRNA_M-pyrifera_M_contig117462.3610.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig117462:8..283- (Macrocystis pyrifera P11B4 male)
GACAAGGCGCAGACGGGCATCTCCTTCTTCCTGGCCTCCTGCCGCACAGG
CTTCCTGGGCATGGAGTTCAGGCGCTCCGACTCTGCATACAAGTACGCTC
TGCGCGTGGCGCCCACCCTCGACTTCTCTGTCATGCACGGTGACCAGATC
TACGCAGACCCTGTCAAGAACTCGCTCGTCGGCGAGGCCTTCACCTTCCC
GGAGTACTGCAGCAGGTACAAGAAGGCCTTCACCACCAGTGGCATCACCA
AGCTCTTCGTGCGTTCCCCCCGCCAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117462:8..283-

>mRNA_M-pyrifera_M_contig117462.3610.1 ID=mRNA_M-pyrifera_M_contig117462.3610.1|Name=mRNA_M-pyrifera_M_contig117462.3610.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig117462:8..283- (Macrocystis pyrifera P11B4 male)
GACAAGGCGCAGACGGGCATCTCCTTCTTCCTGGCCTCCTGCCGCACAGG
CTTCCTGGGCATGGAGTTCAGGCGCTCCGACTCTGCATACAAGTACGCTC
TGCGCGTGGCGCCCACCCTCGACTTCTCTGTCATGCACGGTGACCAGATC
TACGCAGACCCTGTCAAGAACTCGCTCGTCGGCGAGGCCTTCACCTTCCC
GGAGTACTGCAGCAGGTACAAGAAGGCCTTCACCACCAGTGGCATCACCA
AGCTCTTCGTGCGTTCCCCCCGCCACGACAAGGCGCAGACGGGCATCTCC
TTCTTCCTGGCCTCCTGCCGCACAGGCTTCCTGGGCATGGAGTTCAGGCG
CTCCGACTCTGCATACAAGTACGCTCTGCGCGTGGCGCCCACCCTCGACT
TCTCTGTCATGCACGGTGACCAGATCTACGCAGACCCTGTCAAGAACTCG
CTCGTCGGCGAGGCCTTCACCTTCCCGGAGTACTGCAGCAGGTACAAGAA
GGCCTTCACCACCAGTGGCATCACCAAGCTCTTCGTGCGTTCCCCCCGCC
AC
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