mRNA_M-pyrifera_M_contig117431.3602.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117431.3602.1
Unique NamemRNA_M-pyrifera_M_contig117431.3602.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig117431.3602.1 vs. uniprot
Match: C1MY89_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MY89_MICPC)

HSP 1 Score: 58.2 bits (139), Expect = 1.050e-6
Identity = 44/123 (35.77%), Postives = 64/123 (52.03%), Query Frame = 1 
Query:   76 PARAYALFADAAAQGNAKALFEQGLMSAVGMGVPQNPALAEQHLRKAAGQGLADAQFQLGFMLTRATAASADVAAQTRARERQHEG-VQWLGQAAEQGHCKAQTKLGILYFKGVAVAKDNEKA 441
            PAR +  F  AAAQG   A +  GL    G+GV +N + A +   KAA +G   AQ + G++L               +    +EG ++W  +AA QG+ +A+  +GILYF GV V +D  KA
Sbjct:   77 PAREW--FLKAAAQGATLAEYNLGLFYDYGLGVEENKSTAAEFFLKAAKKGHDRAQCEFGYILY--------------SERNDYEGAMKWYQKAAAQGYAQAEYNIGILYFYGVGVERDEAKA 183
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117431.3602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
C1MY89_MICPC1.050e-635.77Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117431contigM-pyrifera_M_contig117431:5..553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size549
Cds size549
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815692.123164-CDS-M-pyrifera_M_contig117431:4..5531622815692.123164-CDS-M-pyrifera_M_contig117431:4..553Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117431 5..553 -
1692277524.2289004-CDS-M-pyrifera_M_contig117431:4..5531692277524.2289004-CDS-M-pyrifera_M_contig117431:4..553Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117431 5..553 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117431.3602.1prot_M-pyrifera_M_contig117431.3602.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117431 5..553 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117431.3602.1

>prot_M-pyrifera_M_contig117431.3602.1 ID=prot_M-pyrifera_M_contig117431.3602.1|Name=mRNA_M-pyrifera_M_contig117431.3602.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=183bp
AQGFAEAQVTLGEILKEGCEFLGADPARAYALFADAAAQGNAKALFEQGL
MSAVGMGVPQNPALAEQHLRKAAGQGLADAQFQLGFMLTRATAASADVAA
QTRARERQHEGVQWLGQAAEQGHCKAQTKLGILYFKGVAVAKDNEKAYHW
YTKAAEQGIPEAQTNLGLMYTNGHGVAKDTAYG
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mRNA from alignment at M-pyrifera_M_contig117431:5..553-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117431.3602.1 ID=mRNA_M-pyrifera_M_contig117431.3602.1|Name=mRNA_M-pyrifera_M_contig117431.3602.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=549bp|location=Sequence derived from alignment at M-pyrifera_M_contig117431:5..553- (Macrocystis pyrifera P11B4 male)
GCCCAGGGCTTTGCAGAGGCACAAGTCACACTGGGAGAGATCCTCAAGGA
GGGCTGTGAATTCCTCGGCGCCGACCCAGCGAGGGCCTACGCCCTCTTCG
CTGACGCTGCGGCACAAGGCAATGCCAAGGCCCTCTTCGAACAGGGCCTC
ATGAGTGCTGTGGGCATGGGCGTGCCTCAGAACCCAGCGCTCGCCGAGCA
GCACTTGCGCAAGGCAGCTGGCCAAGGCCTGGCAGACGCACAGTTCCAGC
TGGGCTTCATGCTCACCAGAGCCACGGCAGCCTCTGCAGATGTGGCGGCT
CAGACCAGAGCGAGGGAGAGGCAGCATGAGGGCGTCCAGTGGCTCGGCCA
GGCCGCAGAGCAGGGCCACTGCAAGGCGCAGACCAAGCTGGGCATCCTCT
ACTTCAAGGGCGTGGCAGTGGCGAAGGACAACGAGAAGGCCTACCACTGG
TACACCAAGGCAGCAGAGCAGGGCATCCCCGAGGCGCAGACCAACCTGGG
CCTCATGTACACCAATGGCCATGGCGTGGCGAAGGACACCGCCTATGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117431:5..553-

>mRNA_M-pyrifera_M_contig117431.3602.1 ID=mRNA_M-pyrifera_M_contig117431.3602.1|Name=mRNA_M-pyrifera_M_contig117431.3602.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1098bp|location=Sequence derived from alignment at M-pyrifera_M_contig117431:5..553- (Macrocystis pyrifera P11B4 male)
GCCCAGGGCTTTGCAGAGGCACAAGTCACACTGGGAGAGATCCTCAAGGA
GGGCTGTGAATTCCTCGGCGCCGACCCAGCGAGGGCCTACGCCCTCTTCG
CTGACGCTGCGGCACAAGGCAATGCCAAGGCCCTCTTCGAACAGGGCCTC
ATGAGTGCTGTGGGCATGGGCGTGCCTCAGAACCCAGCGCTCGCCGAGCA
GCACTTGCGCAAGGCAGCTGGCCAAGGCCTGGCAGACGCACAGTTCCAGC
TGGGCTTCATGCTCACCAGAGCCACGGCAGCCTCTGCAGATGTGGCGGCT
CAGACCAGAGCGAGGGAGAGGCAGCATGAGGGCGTCCAGTGGCTCGGCCA
GGCCGCAGAGCAGGGCCACTGCAAGGCGCAGACCAAGCTGGGCATCCTCT
ACTTCAAGGGCGTGGCAGTGGCGAAGGACAACGAGAAGGCCTACCACTGG
TACACCAAGGCAGCAGAGCAGGGCATCCCCGAGGCGCAGACCAACCTGGG
CCTCATGTACACCAATGGCCATGGCGTGGCGAAGGACACCGCCTATGGCG
CCCAGGGCTTTGCAGAGGCACAAGTCACACTGGGAGAGATCCTCAAGGAG
GGCTGTGAATTCCTCGGCGCCGACCCAGCGAGGGCCTACGCCCTCTTCGC
TGACGCTGCGGCACAAGGCAATGCCAAGGCCCTCTTCGAACAGGGCCTCA
TGAGTGCTGTGGGCATGGGCGTGCCTCAGAACCCAGCGCTCGCCGAGCAG
CACTTGCGCAAGGCAGCTGGCCAAGGCCTGGCAGACGCACAGTTCCAGCT
GGGCTTCATGCTCACCAGAGCCACGGCAGCCTCTGCAGATGTGGCGGCTC
AGACCAGAGCGAGGGAGAGGCAGCATGAGGGCGTCCAGTGGCTCGGCCAG
GCCGCAGAGCAGGGCCACTGCAAGGCGCAGACCAAGCTGGGCATCCTCTA
CTTCAAGGGCGTGGCAGTGGCGAAGGACAACGAGAAGGCCTACCACTGGT
ACACCAAGGCAGCAGAGCAGGGCATCCCCGAGGCGCAGACCAACCTGGGC
CTCATGTACACCAATGGCCATGGCGTGGCGAAGGACACCGCCTATGGC
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