mRNA_M-pyrifera_M_contig117426.3599.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig117426.3599.1 vs. uniprot
Match: A0A7S4M827_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4M827_9EUKA) HSP 1 Score: 85.9 bits (211), Expect = 5.800e-18 Identity = 47/84 (55.95%), Postives = 62/84 (73.81%), Query Frame = 1
Query: 61 LAYNSQARLDAVHQIESTMVELNSIMMEVSTMVAEQGEVVERISRDIDDANEHVLGAQEQLLKYLSSVSSNRGLILKMLFVLVI 312
L Y+ QARLDA+ IE TM +LN IM+++S MV EQ V+ERI ++ D+ HV AQ QL+K L +VSS+RGLILKM F+LV+
Sbjct: 184 LRYDGQARLDAIQDIERTMNDLNKIMVDISVMVEEQQVVMERIDNNVGDSLVHVERAQNQLIKILQNVSSDRGLILKMFFILVV 267
BLAST of mRNA_M-pyrifera_M_contig117426.3599.1 vs. uniprot
Match: A9SZH2_PHYPA (Qa-SNARE, SYP3/Sed5p/Syntaxin 5-type n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A9SZH2_PHYPA) HSP 1 Score: 86.7 bits (213), Expect = 8.580e-18 Identity = 55/111 (49.55%), Postives = 74/111 (66.67%), Query Frame = 1
Query: 16 GPGGQQSQALVQQSSLA----YNSQARLDAVHQIESTMVELNSIMMEVSTMVAEQGEVVERISRDIDDANEHVLGAQEQLLKYLSSVSSNRGLILKMLFVLVIFXXXXFVF 336
GP QSQA +QQ LA Q R +A+ +EST+VEL++I +++TMVA+QGEV RI ++D++ +V GAQ QLLKYL S+SSNR LILK+ VL+ F VF
Sbjct: 243 GPESSQSQARLQQQQLAPVQDSYMQNRAEALQNVESTIVELSTIFTQLATMVAQQGEVAIRIDENMDESLSNVEGAQNQLLKYLDSISSNRWLILKIFMVLITFLLIFVVF 353
BLAST of mRNA_M-pyrifera_M_contig117426.3599.1 vs. uniprot
Match: A0A3L6SKT8_PANMI (Syntaxin 32 n=2 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6SKT8_PANMI) HSP 1 Score: 82.4 bits (202), Expect = 1.790e-16 Identity = 51/105 (48.57%), Postives = 75/105 (71.43%), Query Frame = 1
Query: 28 QQSQALVQQSSLAYNSQARLDAVHQIESTMVELNSIMMEVSTMVAEQGEVVERISRDIDDANEHVLGAQEQLLKYLSSVSSNRGLILKMLFVLVIFXXXXFVFFV 342
QQ Q VQQ S Q+R +A+ +EST+ EL++I +++TMV++QGE+ RI ++DD +V GAQ QLLKYL+S+SSNR L++K+ FVL++F F+FFV
Sbjct: 197 QQQQLAVQQDSYM---QSRAEALQNVESTIHELSNIFTQLATMVSQQGELAIRIDENMDDTLANVEGAQGQLLKYLNSISSNRWLMMKIFFVLMVFLMI-FIFFV 297
BLAST of mRNA_M-pyrifera_M_contig117426.3599.1 vs. uniprot
Match: A2ZPX7_ORYSJ (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A2ZPX7_ORYSJ) HSP 1 Score: 81.6 bits (200), Expect = 4.340e-16 Identity = 50/102 (49.02%), Postives = 74/102 (72.55%), Query Frame = 1
Query: 37 QALVQQSSLAYNSQARLDAVHQIESTMVELNSIMMEVSTMVAEQGEVVERISRDIDDANEHVLGAQEQLLKYLSSVSSNRGLILKMLFVLVIFXXXXFVFFV 342
Q LVQQ S Q+R +A+ +EST+ EL++I +++TMV++QGE+ RI ++DD +V GAQ QLLKYL+S+SSNR L++K+ FVL++F F+FFV
Sbjct: 221 QQLVQQDSYM---QSRAEALQNVESTIHELSNIFTQLATMVSQQGELAIRIDENMDDTLANVEGAQGQLLKYLNSISSNRWLMMKIFFVLMVFLMI-FIFFV 318
BLAST of mRNA_M-pyrifera_M_contig117426.3599.1 vs. uniprot
Match: A0A0D9UXI6_9ORYZ (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9UXI6_9ORYZ) HSP 1 Score: 81.6 bits (200), Expect = 5.290e-16 Identity = 50/102 (49.02%), Postives = 74/102 (72.55%), Query Frame = 1
Query: 37 QALVQQSSLAYNSQARLDAVHQIESTMVELNSIMMEVSTMVAEQGEVVERISRDIDDANEHVLGAQEQLLKYLSSVSSNRGLILKMLFVLVIFXXXXFVFFV 342
Q LVQQ S Q+R +A+ +EST+ EL++I +++TMV++QGE+ RI ++DD +V GAQ QLLKYL+S+SSNR L++K+ FVL++F F+FFV
Sbjct: 243 QQLVQQDSYM---QSRAEALQNVESTIHELSNIFTQLATMVSQQGELAIRIDENMDDTLANVEGAQGQLLKYLNSISSNRWLMMKIFFVLMVFLMI-FIFFV 340
BLAST of mRNA_M-pyrifera_M_contig117426.3599.1 vs. uniprot
Match: A0A0E0MS64_ORYRU (t-SNARE coiled-coil homology domain-containing protein n=14 Tax=Poaceae TaxID=4479 RepID=A0A0E0MS64_ORYRU) HSP 1 Score: 81.6 bits (200), Expect = 5.420e-16 Identity = 50/102 (49.02%), Postives = 74/102 (72.55%), Query Frame = 1
Query: 37 QALVQQSSLAYNSQARLDAVHQIESTMVELNSIMMEVSTMVAEQGEVVERISRDIDDANEHVLGAQEQLLKYLSSVSSNRGLILKMLFVLVIFXXXXFVFFV 342
Q LVQQ S Q+R +A+ +EST+ EL++I +++TMV++QGE+ RI ++DD +V GAQ QLLKYL+S+SSNR L++K+ FVL++F F+FFV
Sbjct: 246 QQLVQQDSYM---QSRAEALQNVESTIHELSNIFTQLATMVSQQGELAIRIDENMDDTLANVEGAQGQLLKYLNSISSNRWLMMKIFFVLMVFLMI-FIFFV 343
BLAST of mRNA_M-pyrifera_M_contig117426.3599.1 vs. uniprot
Match: A0A8B7MTR6_PHODC (syntaxin-32-like isoform X2 n=1 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B7MTR6_PHODC) HSP 1 Score: 80.1 bits (196), Expect = 9.340e-16 Identity = 52/115 (45.22%), Postives = 77/115 (66.96%), Query Frame = 1
Query: 10 MGGPGGQQSQALVQQSSLA----YNSQARLDAVHQIESTMVELNSIMMEVSTMVAEQGEVVERISRDIDDANEHVLGAQEQLLKYLSSVSSNRGLILKMLFVLVIFXXXXFVFFV 342
M G +Q LVQQ + Q+R +A+H +EST+ EL++I +++TMV++QGE+ RI ++DD +V GAQ LLKYL+SVSSNR L++K+ FVL++F F+FFV
Sbjct: 157 MNGDPSSSTQPLVQQQQMVPVQDNYMQSRAEALHNVESTIHELSNIFTQLATMVSQQGELAIRIDENMDDTLANVEGAQGALLKYLNSVSSNRWLMIKIFFVLMVFLMI-FLFFV 270
BLAST of mRNA_M-pyrifera_M_contig117426.3599.1 vs. uniprot
Match: K3XJG5_SETIT (t-SNARE coiled-coil homology domain-containing protein n=18 Tax=PACMAD clade TaxID=147370 RepID=K3XJG5_SETIT) HSP 1 Score: 80.9 bits (198), Expect = 1.090e-15 Identity = 50/105 (47.62%), Postives = 75/105 (71.43%), Query Frame = 1
Query: 28 QQSQALVQQSSLAYNSQARLDAVHQIESTMVELNSIMMEVSTMVAEQGEVVERISRDIDDANEHVLGAQEQLLKYLSSVSSNRGLILKMLFVLVIFXXXXFVFFV 342
QQ Q VQQ S Q+R +A+ +EST+ EL++I +++TMV++QGE+ RI ++D+ +V GAQ QLLKYL+S+SSNR L++K+ FVL++F F+FFV
Sbjct: 249 QQQQLAVQQDSYM---QSRAEALQNVESTIHELSNIFTQLATMVSQQGELAIRIDENMDETLTNVEGAQGQLLKYLNSISSNRWLMMKIFFVLMVFLMI-FIFFV 349
BLAST of mRNA_M-pyrifera_M_contig117426.3599.1 vs. uniprot
Match: A0A1X2G718_9FUNG (t-SNARE n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2G718_9FUNG) HSP 1 Score: 80.5 bits (197), Expect = 1.380e-15 Identity = 51/103 (49.51%), Postives = 68/103 (66.02%), Query Frame = 1
Query: 28 QQSQALVQQSSLAYNSQARLDAVHQIESTMVELNSIMMEVSTMVAEQGEVVERISRDIDDANEHVLGAQEQLLKYLSSVSSNRGLILKMLFVLVIFXXXXFVF 336
QQ QA+ Q N R +A+ IEST+ EL SI +++TMVAEQ E V+RI ++ DD +V+GAQ +LLKY +S+SSNR LI+K+ FV VIF F F
Sbjct: 239 QQQQAVADQDQYIEN---RSNAIESIESTIAELGSIFQQLATMVAEQRETVQRIDQNTDDIEMNVMGAQRELLKYYTSISSNRWLIIKV-FVTVIFFFLLFSF 337
BLAST of mRNA_M-pyrifera_M_contig117426.3599.1 vs. uniprot
Match: A0A388K8E5_CHABU (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K8E5_CHABU) HSP 1 Score: 80.5 bits (197), Expect = 1.810e-15 Identity = 44/86 (51.16%), Postives = 63/86 (73.26%), Query Frame = 1
Query: 79 ARLDAVHQIESTMVELNSIMMEVSTMVAEQGEVVERISRDIDDANEHVLGAQEQLLKYLSSVSSNRGLILKMLFVLVIFXXXXFVF 336
+R +A+ +EST+VEL+SI +++TMVAEQGE+ RI +++D +V GAQ LLKYLS +SSNR L++K+ FVL+IF VF
Sbjct: 293 SRAEALQNVESTIVELSSIFQQLATMVAEQGEMAVRIDENLEDTLANVEGAQGALLKYLSRISSNRWLVIKIFFVLIIFLLIFVVF 378 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117426.3599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig117426.3599.1 >prot_M-pyrifera_M_contig117426.3599.1 ID=prot_M-pyrifera_M_contig117426.3599.1|Name=mRNA_M-pyrifera_M_contig117426.3599.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp MGGPGGQQSQALVQQSSLAYNSQARLDAVHQIESTMVELNSIMMEVSTMVback to top mRNA from alignment at M-pyrifera_M_contig117426:74..418+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig117426.3599.1 ID=mRNA_M-pyrifera_M_contig117426.3599.1|Name=mRNA_M-pyrifera_M_contig117426.3599.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig117426:74..418+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig117426:74..418+ >mRNA_M-pyrifera_M_contig117426.3599.1 ID=mRNA_M-pyrifera_M_contig117426.3599.1|Name=mRNA_M-pyrifera_M_contig117426.3599.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig117426:74..418+ (Macrocystis pyrifera P11B4 male)back to top |