mRNA_M-pyrifera_M_contig117409.3594.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117409.3594.1
Unique NamemRNA_M-pyrifera_M_contig117409.3594.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117409.3594.1 vs. uniprot
Match: A0A6H5KZ79_9PHAE (PPM-type phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZ79_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 2.760e-31
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 1
Query:    1 SRAVLARGGKAERLSYDHKAEDTPEQERVEAAGGFVLRNRVLGILAVTRSFGNQGMKEFVTSVPFISET 207
            SRAVLARGGKAERL+YDHKAED  EQERV AAGGFVLRNRVLGILAV+RSFGNQGMK+ VT+VP +SET
Sbjct:  167 SRAVLARGGKAERLTYDHKAEDAAEQERVNAAGGFVLRNRVLGILAVSRSFGNQGMKDLVTAVPHVSET 235          
BLAST of mRNA_M-pyrifera_M_contig117409.3594.1 vs. uniprot
Match: A0A4D9CPF6_9STRA (PPM-type phosphatase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CPF6_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 6.980e-22
Identity = 48/69 (69.57%), Postives = 55/69 (79.71%), Query Frame = 1
Query:    1 SRAVLARGGKAERLSYDHKAEDTPEQERVEAAGGFVLRNRVLGILAVTRSFGNQGMKEFVTSVPFISET 207
            SRAVL   GK  RL+YDHKAED  EQ R+EAAGGFVLR+RVLGILAVTRSFG+  MK++V  VP+ S T
Sbjct:  232 SRAVLCHQGKGVRLTYDHKAEDKGEQARIEAAGGFVLRSRVLGILAVTRSFGDHRMKDYVIGVPYTSTT 300          
BLAST of mRNA_M-pyrifera_M_contig117409.3594.1 vs. uniprot
Match: A0A2R5G8U3_9STRA (Protein phosphatase 2C-like 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G8U3_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.290e-21
Identity = 46/71 (64.79%), Postives = 56/71 (78.87%), Query Frame = 1
Query:    1 SRAVLAR-GGKAERLSYDHKAEDTPEQERVEAAGGFVLRNRVLGILAVTRSFGNQGMKEFVTSVPFISETR 210
            SRAVL R GG AERL+YDHKA D  E +R+E AGGF+LR RVLGIL+V+RSFG+  MK+FV + PF + TR
Sbjct:   60 SRAVLCRQGGTAERLTYDHKASDPVEMKRIEDAGGFILRKRVLGILSVSRSFGDHAMKKFVVARPFTTRTR 130          
BLAST of mRNA_M-pyrifera_M_contig117409.3594.1 vs. uniprot
Match: A0A511KF83_RHOTO (Protein phosphatase 2C n=1 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A511KF83_RHOTO)

HSP 1 Score: 93.6 bits (231), Expect = 1.130e-20
Identity = 45/69 (65.22%), Postives = 53/69 (76.81%), Query Frame = 1
Query:    1 SRAVLARGGKAERLSYDHKAEDTPEQERVEAAGGFVLRNRVLGILAVTRSFGNQGMKEFVTSVPFISET 207
            +RAVL+RGGKA RL+YDHK  DT E +R+  AGGFVL NRV G+LAVTRS G+  MKEFV   PF +ET
Sbjct:  393 ARAVLSRGGKAVRLTYDHKGSDTREAKRISDAGGFVLNNRVNGVLAVTRSLGDSSMKEFVVGAPFTTET 461          
BLAST of mRNA_M-pyrifera_M_contig117409.3594.1 vs. uniprot
Match: A0A835ZH02_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH02_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.210e-20
Identity = 47/69 (68.12%), Postives = 55/69 (79.71%), Query Frame = 1
Query:    1 SRAVLARGGKAERLSYDHKAEDTPEQERVEAAGGFVLRNRVLGILAVTRSFGNQGMKEFVTSVPFISET 207
            SRAVL + G A RL+ DHKA+D  E ERVEA+GGFVLR RVLGILAV RSFG+ GMKE+V ++PF S T
Sbjct:  119 SRAVLYQRGAAARLTRDHKADDPAEVERVEASGGFVLRGRVLGILAVARSFGDHGMKEWVPALPFTSAT 187          
BLAST of mRNA_M-pyrifera_M_contig117409.3594.1 vs. uniprot
Match: M7XE48_RHOT1 (Protein phosphatase 2c n=2 Tax=Rhodosporidium toruloides TaxID=5286 RepID=M7XE48_RHOT1)

HSP 1 Score: 91.3 bits (225), Expect = 4.490e-20
Identity = 44/69 (63.77%), Postives = 52/69 (75.36%), Query Frame = 1
Query:    1 SRAVLARGGKAERLSYDHKAEDTPEQERVEAAGGFVLRNRVLGILAVTRSFGNQGMKEFVTSVPFISET 207
            +RAVL+RGGKA RL+YDHK  D  E +R+  AGGFVL NRV G+LAVTRS G+  MKEFV   PF +ET
Sbjct:  247 ARAVLSRGGKAVRLTYDHKGSDMREAKRISDAGGFVLNNRVNGVLAVTRSLGDSSMKEFVVGAPFTTET 315          
BLAST of mRNA_M-pyrifera_M_contig117409.3594.1 vs. uniprot
Match: G0SUJ1_RHOT2 (Ptc1p n=3 Tax=Rhodosporidium toruloides TaxID=5286 RepID=G0SUJ1_RHOT2)

HSP 1 Score: 91.3 bits (225), Expect = 7.340e-20
Identity = 44/69 (63.77%), Postives = 52/69 (75.36%), Query Frame = 1
Query:    1 SRAVLARGGKAERLSYDHKAEDTPEQERVEAAGGFVLRNRVLGILAVTRSFGNQGMKEFVTSVPFISET 207
            +RAVL+RGGKA RL+YDHK  D  E +R+  AGGFVL NRV G+LAVTRS G+  MKEFV   PF +ET
Sbjct:  390 ARAVLSRGGKAVRLTYDHKGSDMREAKRISDAGGFVLNNRVNGVLAVTRSLGDSSMKEFVVGAPFTTET 458          
BLAST of mRNA_M-pyrifera_M_contig117409.3594.1 vs. uniprot
Match: A0A1Y1UAQ5_9TREE (Phosphatase 2C-domain-containing protein (Fragment) n=1 Tax=Kockovaella imperatae TaxID=4999 RepID=A0A1Y1UAQ5_9TREE)

HSP 1 Score: 90.9 bits (224), Expect = 7.750e-20
Identity = 43/69 (62.32%), Postives = 52/69 (75.36%), Query Frame = 1
Query:    1 SRAVLARGGKAERLSYDHKAEDTPEQERVEAAGGFVLRNRVLGILAVTRSFGNQGMKEFVTSVPFISET 207
            +RAVL RGGKA RL+YDHK  DT E +R+  AGGFV+ NRV G+LAVTRS G+  MKEFV   P+ +ET
Sbjct:  306 ARAVLCRGGKAVRLTYDHKGSDTQEAKRITDAGGFVMNNRVNGVLAVTRSLGDASMKEFVVGAPYTTET 374          
BLAST of mRNA_M-pyrifera_M_contig117409.3594.1 vs. uniprot
Match: A0A066W2N5_TILAU (PP2C-domain-containing protein n=1 Tax=Tilletiaria anomala (strain ATCC 24038 / CBS 436.72 / UBC 951) TaxID=1037660 RepID=A0A066W2N5_TILAU)

HSP 1 Score: 90.9 bits (224), Expect = 9.770e-20
Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    1 SRAVLARGGKAERLSYDHKAEDTPEQERVEAAGGFVLRNRVLGILAVTRSFGNQGMKEFVTSVPFISETR 210
            +RAVL RGGKA RL+YDHK  D  E +R+  AGGFV+ NRV G+LAVTRS G+  MKEFV   P+ +ETR
Sbjct:  377 ARAVLCRGGKAIRLTYDHKGSDAQEAKRITDAGGFVMNNRVNGVLAVTRSLGDSSMKEFVVGAPYTTETR 446          
BLAST of mRNA_M-pyrifera_M_contig117409.3594.1 vs. uniprot
Match: A0A194SCU3_RHOGW (PPM-type phosphatase domain-containing protein n=1 Tax=Rhodotorula graminis (strain WP1) TaxID=578459 RepID=A0A194SCU3_RHOGW)

HSP 1 Score: 90.1 bits (222), Expect = 1.460e-19
Identity = 43/69 (62.32%), Postives = 52/69 (75.36%), Query Frame = 1
Query:    1 SRAVLARGGKAERLSYDHKAEDTPEQERVEAAGGFVLRNRVLGILAVTRSFGNQGMKEFVTSVPFISET 207
            +RAVL+RGG+A RL+YDHK  D  E +R+  AGGFVL NRV G+LAVTRS G+  MKEFV   PF +ET
Sbjct:  301 ARAVLSRGGRAVRLTYDHKGSDAKEAKRISDAGGFVLNNRVNGVLAVTRSLGDSSMKEFVVGSPFTTET 369          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117409.3594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZ79_9PHAE2.760e-3185.51PPM-type phosphatase domain-containing protein n=2... [more]
A0A4D9CPF6_9STRA6.980e-2269.57PPM-type phosphatase domain-containing protein n=2... [more]
A0A2R5G8U3_9STRA2.290e-2164.79Protein phosphatase 2C-like 1 n=1 Tax=Hondaea ferm... [more]
A0A511KF83_RHOTO1.130e-2065.22Protein phosphatase 2C n=1 Tax=Rhodosporidium toru... [more]
A0A835ZH02_9STRA1.210e-2068.12Phosphatase 2C-like domain-containing protein n=1 ... [more]
M7XE48_RHOT14.490e-2063.77Protein phosphatase 2c n=2 Tax=Rhodosporidium toru... [more]
G0SUJ1_RHOT27.340e-2063.77Ptc1p n=3 Tax=Rhodosporidium toruloides TaxID=5286... [more]
A0A1Y1UAQ5_9TREE7.750e-2062.32Phosphatase 2C-domain-containing protein (Fragment... [more]
A0A066W2N5_TILAU9.770e-2061.43PP2C-domain-containing protein n=1 Tax=Tilletiaria... [more]
A0A194SCU3_RHOGW1.460e-1962.32PPM-type phosphatase domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117409contigM-pyrifera_M_contig117409:74..286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.4
Seed ortholog evalue6.8e-25
Seed eggNOG ortholog2880.D7FY87
KEGG koko:K01090,ko:K19704
KEGG Pathwayko04011,map04011
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Exons1
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815691.7844121-CDS-M-pyrifera_M_contig117409:73..2861622815691.7844121-CDS-M-pyrifera_M_contig117409:73..286Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117409 74..286 +
1692277524.1030526-CDS-M-pyrifera_M_contig117409:73..2861692277524.1030526-CDS-M-pyrifera_M_contig117409:73..286Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117409 74..286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117409.3594.1prot_M-pyrifera_M_contig117409.3594.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117409 74..286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117409.3594.1

>prot_M-pyrifera_M_contig117409.3594.1 ID=prot_M-pyrifera_M_contig117409.3594.1|Name=mRNA_M-pyrifera_M_contig117409.3594.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=71bp
SRAVLARGGKAERLSYDHKAEDTPEQERVEAAGGFVLRNRVLGILAVTRS
FGNQGMKEFVTSVPFISETR*
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mRNA from alignment at M-pyrifera_M_contig117409:74..286+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117409.3594.1 ID=mRNA_M-pyrifera_M_contig117409.3594.1|Name=mRNA_M-pyrifera_M_contig117409.3594.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=213bp|location=Sequence derived from alignment at M-pyrifera_M_contig117409:74..286+ (Macrocystis pyrifera P11B4 male)
AGTCGAGCTGTCTTGGCTAGGGGGGGCAAGGCGGAGCGGCTGAGCTACGA CCACAAGGCGGAGGACACTCCCGAGCAGGAGAGGGTGGAGGCCGCCGGAG GCTTCGTGCTGAGGAACCGCGTTCTCGGCATCCTCGCCGTCACGCGCAGC TTCGGGAATCAGGGAATGAAGGAGTTCGTTACCTCCGTGCCCTTCATATC GGAGACGAGGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117409:74..286+

>mRNA_M-pyrifera_M_contig117409.3594.1 ID=mRNA_M-pyrifera_M_contig117409.3594.1|Name=mRNA_M-pyrifera_M_contig117409.3594.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig117409:74..286+ (Macrocystis pyrifera P11B4 male)
AGTCGAGCTGTCTTGGCTAGGGGGGGCAAGGCGGAGCGGCTGAGCTACGA
CCACAAGGCGGAGGACACTCCCGAGCAGGAGAGGGTGGAGGCCGCCGGAG
GCTTCGTGCTGAGGAACCGCGTTCTCGGCATCCTCGCCGTCACGCGCAGC
TTCGGGAATCAGGGAATGAAGGAGTTCGTTACCTCCGTGCCCTTCATATC
GGAGACGAGGTAGAGTCGAGCTGTCTTGGCTAGGGGGGGCAAGGCGGAGC
GGCTGAGCTACGACCACAAGGCGGAGGACACTCCCGAGCAGGAGAGGGTG
GAGGCCGCCGGAGGCTTCGTGCTGAGGAACCGCGTTCTCGGCATCCTCGC
CGTCACGCGCAGCTTCGGGAATCAGGGAATGAAGGAGTTCGTTACCTCCG
TGCCCTTCATATCGGAGACGAGGTAG
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