mRNA_M-pyrifera_M_contig117292.3578.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117292.3578.1
Unique NamemRNA_M-pyrifera_M_contig117292.3578.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig117292.3578.1 vs. uniprot
Match: A0A2E7KEV0_9PLAN (Uncharacterized protein n=4 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KEV0_9PLAN)

HSP 1 Score: 341 bits (874), Expect = 1.550e-116
Identity = 181/185 (97.84%), Postives = 184/185 (99.46%), Query Frame = 1 
Query:    1 SRQRSYSASDFAMFKLTTKERNQEYRDMLAEKLKQTRDNLSRDLSRELDLNVAFQISNTVALEPHYESINELSSSKYVSYGVQIEGADEVQDANVNTLTFLNVKRKLIALGAIAPYKDLEWTRTTSRAWAKAILSQNPEPSPFPDRLPDNSRENLIPIATLVTLAMMAVLAIIVKRRRKQVASSE 555
            SRQRSYSASDFAMFKLTTKERNQEYRDMLAEKLKQTRDNLSRDLSRELDLNVAFQISNTVALEPHYESINELSSSKYVSYGVQ+EGADEVQDANVNTLTFLNVKRKLIALGAIAPYKDLEWTRTTSRAWAKAIL+QNPEPSPFPDRLPD+S ENLIPIATLVTLAMMAVLAIIVKRRRKQVASSE
Sbjct:   98 SRQRSYSASDFAMFKLTTKERNQEYRDMLAEKLKQTRDNLSRDLSRELDLNVAFQISNTVALEPHYESINELSSSKYVSYGVQVEGADEVQDANVNTLTFLNVKRKLIALGAIAPYKDLEWTRTTSRAWAKAILAQNPEPSPFPDRLPDHSHENLIPIATLVTLAMMAVLAIIVKRRRKQVASSE 282
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BLAST of mRNA_M-pyrifera_M_contig117292.3578.1 vs. uniprot
Match: A0A517WMX4_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A517WMX4_9PLAN)

HSP 1 Score: 83.2 bits (204), Expect = 7.310e-16
Identity = 65/182 (35.71%), Postives = 97/182 (53.30%), Query Frame = 1 
Query:   28 DFAMFKLTTKERNQEYRDMLAE-KLKQTR--DNLSRDLSRELDLNVAFQISNTVALEPHYESINELSSSKYVS-YGVQIEGADE----VQDANVNTLTFLNVKRKLIALGAIAPYKDLEWTRTTSRAWAKAILSQNPEP---SPFPDRLPDNSRENLIPIA--TLVTLAMMAVLAIIVKRRR 534
            +F   K  TK   +EYR ++ E K K  +  + L+  +  + DL  A ++S  V  EPH+ES + L+ S +++ Y    EGA E    V++ +  T T +NV+ KL+ L   AP  DLEWTRT SR W KAI++ N +P   S +P        +    IA   L+  A++  LAI VK+ R
Sbjct:  106 NFLELKKATK---REYRQIIQEIKAKDPKIYERLNTGIQEQFDLATAIEVSQLVPFEPHFESSHALAVSMFLTIYLPPEEGAAEEAEPVEEISAATATVMNVEGKLLFLFCYAPQDDLEWTRTASRDWTKAIIAANDKPPVASSYPSNFDPLKSDQGDKIAKWVLIIAAVLVALAIFVKKNR 284
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117292.3578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2E7KEV0_9PLAN1.550e-11697.84Uncharacterized protein n=4 Tax=Gimesia TaxID=1649... [more]
A0A517WMX4_9PLAN7.310e-1635.71Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117292contigM-pyrifera_M_contig117292:1..555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score86.3
Seed ortholog evalue1.7e-14
Seed eggNOG ortholog344747.PM8797T_09554
Hectar predicted targeting categoryother localisation
EggNOG OGs2EESN@1,338K8@2
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size555
Cds size555
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815690.553887-CDS-M-pyrifera_M_contig117292:0..5551622815690.553887-CDS-M-pyrifera_M_contig117292:0..555Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117292 1..555 -
1692277523.549284-CDS-M-pyrifera_M_contig117292:0..5551692277523.549284-CDS-M-pyrifera_M_contig117292:0..555Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117292 1..555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117292.3578.1prot_M-pyrifera_M_contig117292.3578.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117292 1..555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117292.3578.1

>prot_M-pyrifera_M_contig117292.3578.1 ID=prot_M-pyrifera_M_contig117292.3578.1|Name=mRNA_M-pyrifera_M_contig117292.3578.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=185bp
SRQRSYSASDFAMFKLTTKERNQEYRDMLAEKLKQTRDNLSRDLSRELDL
NVAFQISNTVALEPHYESINELSSSKYVSYGVQIEGADEVQDANVNTLTF
LNVKRKLIALGAIAPYKDLEWTRTTSRAWAKAILSQNPEPSPFPDRLPDN
SRENLIPIATLVTLAMMAVLAIIVKRRRKQVASSE
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mRNA from alignment at M-pyrifera_M_contig117292:1..555-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117292.3578.1 ID=mRNA_M-pyrifera_M_contig117292.3578.1|Name=mRNA_M-pyrifera_M_contig117292.3578.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=555bp|location=Sequence derived from alignment at M-pyrifera_M_contig117292:1..555- (Macrocystis pyrifera P11B4 male)
TCCAGACAACGTTCTTACAGTGCTTCCGATTTCGCGATGTTCAAGCTGAC
GACAAAAGAGAGGAACCAGGAATACCGGGACATGCTGGCCGAGAAGCTGA
AGCAGACCCGCGACAATTTGAGTCGTGATCTCAGCCGTGAGCTGGATCTG
AATGTCGCGTTTCAGATTTCAAATACGGTCGCCCTCGAACCGCATTATGA
ATCGATCAATGAATTATCCAGCTCTAAGTATGTGTCCTATGGGGTGCAGA
TCGAGGGCGCAGATGAGGTCCAGGATGCGAATGTCAATACGCTCACCTTC
CTGAACGTGAAGCGAAAGCTGATCGCCCTGGGGGCCATCGCGCCTTACAA
GGATCTGGAATGGACGCGCACCACCTCCCGCGCCTGGGCAAAGGCGATCC
TGTCACAGAATCCCGAGCCGTCTCCATTCCCGGATCGCCTCCCGGATAAC
AGTCGCGAAAACCTGATTCCGATTGCAACGCTGGTGACCCTGGCTATGAT
GGCGGTGCTCGCCATCATAGTGAAACGGAGACGGAAGCAGGTGGCTTCCT
CAGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117292:1..555-

>mRNA_M-pyrifera_M_contig117292.3578.1 ID=mRNA_M-pyrifera_M_contig117292.3578.1|Name=mRNA_M-pyrifera_M_contig117292.3578.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1110bp|location=Sequence derived from alignment at M-pyrifera_M_contig117292:1..555- (Macrocystis pyrifera P11B4 male)
TCCAGACAACGTTCTTACAGTGCTTCCGATTTCGCGATGTTCAAGCTGAC
GACAAAAGAGAGGAACCAGGAATACCGGGACATGCTGGCCGAGAAGCTGA
AGCAGACCCGCGACAATTTGAGTCGTGATCTCAGCCGTGAGCTGGATCTG
AATGTCGCGTTTCAGATTTCAAATACGGTCGCCCTCGAACCGCATTATGA
ATCGATCAATGAATTATCCAGCTCTAAGTATGTGTCCTATGGGGTGCAGA
TCGAGGGCGCAGATGAGGTCCAGGATGCGAATGTCAATACGCTCACCTTC
CTGAACGTGAAGCGAAAGCTGATCGCCCTGGGGGCCATCGCGCCTTACAA
GGATCTGGAATGGACGCGCACCACCTCCCGCGCCTGGGCAAAGGCGATCC
TGTCACAGAATCCCGAGCCGTCTCCATTCCCGGATCGCCTCCCGGATAAC
AGTCGCGAAAACCTGATTCCGATTGCAACGCTGGTGACCCTGGCTATGAT
GGCGGTGCTCGCCATCATAGTGAAACGGAGACGGAAGCAGGTGGCTTCCT
CAGAGTCCAGACAACGTTCTTACAGTGCTTCCGATTTCGCGATGTTCAAG
CTGACGACAAAAGAGAGGAACCAGGAATACCGGGACATGCTGGCCGAGAA
GCTGAAGCAGACCCGCGACAATTTGAGTCGTGATCTCAGCCGTGAGCTGG
ATCTGAATGTCGCGTTTCAGATTTCAAATACGGTCGCCCTCGAACCGCAT
TATGAATCGATCAATGAATTATCCAGCTCTAAGTATGTGTCCTATGGGGT
GCAGATCGAGGGCGCAGATGAGGTCCAGGATGCGAATGTCAATACGCTCA
CCTTCCTGAACGTGAAGCGAAAGCTGATCGCCCTGGGGGCCATCGCGCCT
TACAAGGATCTGGAATGGACGCGCACCACCTCCCGCGCCTGGGCAAAGGC
GATCCTGTCACAGAATCCCGAGCCGTCTCCATTCCCGGATCGCCTCCCGG
ATAACAGTCGCGAAAACCTGATTCCGATTGCAACGCTGGTGACCCTGGCT
ATGATGGCGGTGCTCGCCATCATAGTGAAACGGAGACGGAAGCAGGTGGC
TTCCTCAGAG
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