mRNA_M-pyrifera_M_contig11729.3576.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11729.3576.1
Unique NamemRNA_M-pyrifera_M_contig11729.3576.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11729.3576.1 vs. uniprot
Match: D7G867_ECTSI (PCI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G867_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 6.270e-50
Identity = 87/108 (80.56%), Postives = 90/108 (83.33%), Query Frame = 1 
Query:    1 HLDDAEIKVGTVEGMCPLEEMSRRVPGDLHILEKEHPALLMPADGRSGGAPPRPWSNNDLVVKRHQRAAAGMDISKPELLRTPQWLARTVDHLVANCMDKGPQGGGDP 324
            HLDDA+IK GTVE MCP EEMSRRVPGDLHILEKEHP   MP  G   G PPR W ++DLVVKRHQRAAAGMDISKPELLRTP WLARTVDHLV  CMDKGP GGGDP
Sbjct:  247 HLDDAKIKQGTVEAMCPPEEMSRRVPGDLHILEKEHPDFFMPDLG--DGGPPRLWLHDDLVVKRHQRAAAGMDISKPELLRTPLWLARTVDHLVMICMDKGPHGGGDP 352
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BLAST of mRNA_M-pyrifera_M_contig11729.3576.1 vs. uniprot
Match: A0A5J4Z7I1_PORPP (Germinal-center associated nuclear protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z7I1_PORPP)

HSP 1 Score: 61.2 bits (147), Expect = 1.220e-8
Identity = 36/101 (35.64%), Postives = 57/101 (56.44%), Query Frame = 1 
Query:    4 LDDAEIKVGTVEGMCPLEE-MSRRVPGDLHILEKEHPALLMPADGRSGGAPPRPWSNNDLVVKRHQRAAAGMDISKPELLRTPQWLARTVDHLVANCMDKG 303
            L+ +E  VGT   MCP +E + R+   DL I E      ++P  G +G A      ++   VK++ R+AA  + ++PE +R PQ L RT+D+L+   +DKG
Sbjct:  476 LEQSECLVGTCLDMCPAKERIDRQEQRDLSIFE------ILPGTGANGEAS---LVDHAHAVKKYARSAAASEAARPEQIRPPQVLVRTMDYLIDEILDKG 567
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BLAST of mRNA_M-pyrifera_M_contig11729.3576.1 vs. uniprot
Match: A0A2R5GTD9_9STRA (SAC3 family protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GTD9_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.270e-8
Identity = 36/101 (35.64%), Postives = 53/101 (52.48%), Query Frame = 1 
Query:   25 VGTVEGMCPLEEMSRRV-PGDLHILEKEHPALLMPADGRSGGAPPRPWSNNDLVVKRHQRAAAGMDISKPELLRTPQWLARTVDHLVANCMDKGPQGGGDP 324
            VG    MCP  E  RR     LH+LE++HP +            P   S  +L VK   R++AGM +  P+++R    LART+D+L  + +D+ P+ G DP
Sbjct:  792 VGECMKMCPKSETDRRYHENSLHLLERQHPEM------------PELPSKYELTVKSFMRSSAGMVLDIPDIVRPESVLARTIDYLWDDILDR-PERGADP 879
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BLAST of mRNA_M-pyrifera_M_contig11729.3576.1 vs. uniprot
Match: A0A2V3J181_9FLOR (Germinal-center associated nuclear protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J181_9FLOR)

HSP 1 Score: 53.5 bits (127), Expect = 6.140e-6
Identity = 35/102 (34.31%), Postives = 51/102 (50.00%), Query Frame = 1 
Query:    4 LDDAEIKVGTVEGMCPLEEMSRRVPG-DLHILEKEHPALLMPADGRSGGAPPRPWSNNDLV--VKRHQRAAAGMDISKPELLRTPQWLARTVDHLVANCMDK 300
            + DA+  +GT + MCPL+E   R+   D+ + E +                  P S  DL   VK+++R+AA  +  KPE +R P  LART+DHL   C  K
Sbjct:  560 IQDAKQLIGTCQEMCPLDEFESRIAQRDVSLFELKQ----------------GPGSEPDLTKAVKKYRRSAAISEEQKPEEVRPPPVLARTMDHLKKVCDSK 645
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11729.3576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G867_ECTSI6.270e-5080.56PCI domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A5J4Z7I1_PORPP1.220e-835.64Germinal-center associated nuclear protein n=1 Tax... [more]
A0A2R5GTD9_9STRA2.270e-835.64SAC3 family protein 1 n=1 Tax=Hondaea fermentalgia... [more]
A0A2V3J181_9FLOR6.140e-634.31Germinal-center associated nuclear protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11729contigM-pyrifera_M_contig11729:9092..9415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.2
Seed ortholog evalue4.2e-42
Seed eggNOG ortholog2880.D7G867
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mRNA transport
EggNOG OGsCOG5079@1,KOG1860@2759
COG Functional cat.DU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815690.471849-CDS-M-pyrifera_M_contig11729:9091..94151622815690.471849-CDS-M-pyrifera_M_contig11729:9091..9415Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11729 9092..9415 +
1692277523.5220296-CDS-M-pyrifera_M_contig11729:9091..94151692277523.5220296-CDS-M-pyrifera_M_contig11729:9091..9415Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11729 9092..9415 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11729.3576.1prot_M-pyrifera_M_contig11729.3576.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11729 9092..9415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11729.3576.1

>prot_M-pyrifera_M_contig11729.3576.1 ID=prot_M-pyrifera_M_contig11729.3576.1|Name=mRNA_M-pyrifera_M_contig11729.3576.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
HLDDAEIKVGTVEGMCPLEEMSRRVPGDLHILEKEHPALLMPADGRSGGA
PPRPWSNNDLVVKRHQRAAAGMDISKPELLRTPQWLARTVDHLVANCMDK
GPQGGGDP
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mRNA from alignment at M-pyrifera_M_contig11729:9092..9415+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11729.3576.1 ID=mRNA_M-pyrifera_M_contig11729.3576.1|Name=mRNA_M-pyrifera_M_contig11729.3576.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig11729:9092..9415+ (Macrocystis pyrifera P11B4 male)
CACCTGGACGACGCGGAGATAAAAGTAGGGACGGTGGAAGGGATGTGCCC
GCTGGAAGAGATGTCGCGCCGCGTTCCGGGTGACCTGCACATCCTGGAGA
AGGAGCACCCCGCGCTGTTGATGCCCGCCGACGGGAGGAGCGGGGGCGCT
CCACCCAGACCCTGGTCGAACAACGACCTCGTTGTCAAGAGGCACCAGCG
CGCGGCGGCGGGGATGGACATCAGCAAGCCGGAGCTGCTGCGCACGCCGC
AGTGGCTCGCCCGTACCGTGGACCACCTTGTCGCGAACTGCATGGACAAA
GGGCCGCAAGGTGGAGGAGACCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11729:9092..9415+

>mRNA_M-pyrifera_M_contig11729.3576.1 ID=mRNA_M-pyrifera_M_contig11729.3576.1|Name=mRNA_M-pyrifera_M_contig11729.3576.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig11729:9092..9415+ (Macrocystis pyrifera P11B4 male)
CACCTGGACGACGCGGAGATAAAAGTAGGGACGGTGGAAGGGATGTGCCC
GCTGGAAGAGATGTCGCGCCGCGTTCCGGGTGACCTGCACATCCTGGAGA
AGGAGCACCCCGCGCTGTTGATGCCCGCCGACGGGAGGAGCGGGGGCGCT
CCACCCAGACCCTGGTCGAACAACGACCTCGTTGTCAAGAGGCACCAGCG
CGCGGCGGCGGGGATGGACATCAGCAAGCCGGAGCTGCTGCGCACGCCGC
AGTGGCTCGCCCGTACCGTGGACCACCTTGTCGCGAACTGCATGGACAAA
GGGCCGCAAGGTGGAGGAGACCCCCACCTGGACGACGCGGAGATAAAAGT
AGGGACGGTGGAAGGGATGTGCCCGCTGGAAGAGATGTCGCGCCGCGTTC
CGGGTGACCTGCACATCCTGGAGAAGGAGCACCCCGCGCTGTTGATGCCC
GCCGACGGGAGGAGCGGGGGCGCTCCACCCAGACCCTGGTCGAACAACGA
CCTCGTTGTCAAGAGGCACCAGCGCGCGGCGGCGGGGATGGACATCAGCA
AGCCGGAGCTGCTGCGCACGCCGCAGTGGCTCGCCCGTACCGTGGACCAC
CTTGTCGCGAACTGCATGGACAAAGGGCCGCAAGGTGGAGGAGACCCC
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