mRNA_M-pyrifera_M_contig117277.3573.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117277.3573.1
Unique NamemRNA_M-pyrifera_M_contig117277.3573.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig117277.3573.1 vs. uniprot
Match: UPI0009FC3BC5 (tetratricopeptide repeat protein n=1 Tax=Desulfobulbus elongatus TaxID=53332 RepID=UPI0009FC3BC5)

HSP 1 Score: 56.2 bits (134), Expect = 1.460e-6
Identity = 25/73 (34.25%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:  103 YDKGVQLNQRGILVEASVMLTEALAIDPEYAEAYYQRGLSFLGMGRNQHAIKDFTAAAGHGIRQLDPYLRLIK 321
            Y+KG +L   G  V++++ LT AL +DP +A+A+Y RGL  +     Q A ++F +A       +D ++ L+K
Sbjct:   35 YEKGKRLYDHGDYVKSNIELTNALQLDPNFADAFYMRGLVEIKRNNPQKAFENFNSAIAKNQNHIDAHIELVK 107
[Close]
BLAST of mRNA_M-pyrifera_M_contig117277.3573.1 vs. uniprot
Match: A0A6J4XA85_9DELT (Uncharacterized protein n=1 Tax=Olavius sp. associated proteobacterium Delta 1 TaxID=698986 RepID=A0A6J4XA85_9DELT)

HSP 1 Score: 52.8 bits (125), Expect = 2.010e-6
Identity = 29/67 (43.28%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:   91 AKRHYDKGVQLNQRGILVEASVMLTEALAIDPEYAEAYYQRGLSFLGMGRNQHAIKDFTAAAGHGIR 291
            AK  Y++G +L Q G   EA   L++A+A +P YAEAY+ RG  +  +GR   A  D  AAA  G R
Sbjct:   11 AKHWYERGQRLKQDGRHREAIKALSQAIAKNPAYAEAYFARGACYYALGRYDQAGDDIDAAAILGCR 77
[Close]
BLAST of mRNA_M-pyrifera_M_contig117277.3573.1 vs. uniprot
Match: UPI000932DF4E (tetratricopeptide repeat protein n=1 Tax=Spirulina major TaxID=270636 RepID=UPI000932DF4E)

HSP 1 Score: 52.8 bits (125), Expect = 1.560e-5
Identity = 25/60 (41.67%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:   85 PEAKRHYDKGVQLNQRGILVEASVMLTEALAIDPEYAEAYYQRGLSFLGMGRNQHAIKDF 264
            PEAK  +++GV   Q G L+ A  + ++A+ IDP +A AYY RGL++  + R + AI D+
Sbjct:  134 PEAKELFNQGVDRYQAGDLMGAIDLWSQAIEIDPNFAYAYYNRGLAYSNLKRYEEAITDY 193
[Close]
BLAST of mRNA_M-pyrifera_M_contig117277.3573.1 vs. uniprot
Match: UPI0016831B1C (tetratricopeptide repeat protein n=1 Tax=Calothrix sp. FACHB-156 TaxID=2692779 RepID=UPI0016831B1C)

HSP 1 Score: 52.8 bits (125), Expect = 1.760e-5
Identity = 33/95 (34.74%), Postives = 46/95 (48.42%), Query Frame = 1 
Query:   88 EAKRHYDKGVQLNQRGILVEASVMLTEALAIDPEYAEAYYQRGLSFLGMGRNQHAIKDFTAAAGHGIRQLDPYLRLIKWHTDRR-QYAAGLIVTD 369
            +AK  +DKG+     G   EA    TEA+ I+P YAEAYY+RGL +     NQ    D T     G  ++D Y  +       + Q + G  +TD
Sbjct:   29 KAKDWFDKGIMKVNEGKYEEALAAFTEAIKIEPRYAEAYYRRGLIYAKYPENQPLNADGTVK---GCERIDAYRIICPVSVQNKVQESKGKAITD 120
[Close]
BLAST of mRNA_M-pyrifera_M_contig117277.3573.1 vs. uniprot
Match: A0A7J4GK94_9ARCH (Tetratricopeptide repeat protein n=1 Tax=Candidatus Poseidoniales archaeon TaxID=2163009 RepID=A0A7J4GK94_9ARCH)

HSP 1 Score: 51.6 bits (122), Expect = 5.940e-5
Identity = 29/95 (30.53%), Postives = 46/95 (48.42%), Query Frame = 1 
Query:  112 GVQLNQRGILVEASVMLTEALAIDPEYAEAYYQRGLSFLGMGRNQHAIKDFTAAAGHGIRQLDPYLRLIKWHTDRRQYAAGLIVTDQLAANMPEN 396
            G  L  +  L EA   L EA+ +D +  E +YQRGL +L  G+   A+ DF  AA  G   ++  LR+   H ++  + A      ++    P+N
Sbjct:  649 GATLIAQDRLTEAEQPLNEAIHLDGDIPEGWYQRGLLYLEFGQADSALSDFETAAVRGHPHMNALLRIAAIHHEKEDWEAAEAAWRKVLDAEPDN 743
[Close]
BLAST of mRNA_M-pyrifera_M_contig117277.3573.1 vs. uniprot
Match: UPI0002F61A89 (tetratricopeptide repeat protein n=1 Tax=Calothrix sp. PCC 7103 TaxID=32057 RepID=UPI0002F61A89)

HSP 1 Score: 50.8 bits (120), Expect = 8.600e-5
Identity = 33/95 (34.74%), Postives = 47/95 (49.47%), Query Frame = 1 
Query:   88 EAKRHYDKGVQLNQRGILVEASVMLTEALAIDPEYAEAYYQRGLSFLGMGRNQHAIKDFTAAAGHGIRQLDPYLRLIKWHTDRR-QYAAGLIVTD 369
            +AK  +DKG+     G   EA    TEA+ I+P YAEAYY+RGL +     NQ    D T     G +++D Y  +       + Q + G  +TD
Sbjct:   39 KAKDWFDKGIIKVNEGNYQEALADFTEAINIEPRYAEAYYRRGLIYAKYPENQPLNADGTVK---GCQRIDAYRIICPVSVQNKVQESKGKAITD 130
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117277.3573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
UPI0009FC3BC51.460e-634.25tetratricopeptide repeat protein n=1 Tax=Desulfobu... [more]
A0A6J4XA85_9DELT2.010e-643.28Uncharacterized protein n=1 Tax=Olavius sp. associ... [more]
UPI000932DF4E1.560e-541.67tetratricopeptide repeat protein n=1 Tax=Spirulina... [more]
UPI0016831B1C1.760e-534.74tetratricopeptide repeat protein n=1 Tax=Calothrix... [more]
A0A7J4GK94_9ARCH5.940e-530.53Tetratricopeptide repeat protein n=1 Tax=Candidatu... [more]
UPI0002F61A898.600e-534.74tetratricopeptide repeat protein n=1 Tax=Calothrix... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117277contigM-pyrifera_M_contig117277:151..546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size396
Cds size372
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815690.2795944-UTR-M-pyrifera_M_contig117277:150..1741622815690.2795944-UTR-M-pyrifera_M_contig117277:150..174Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117277 151..174 +
1692277523.439427-UTR-M-pyrifera_M_contig117277:150..1741692277523.439427-UTR-M-pyrifera_M_contig117277:150..174Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117277 151..174 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815690.290483-CDS-M-pyrifera_M_contig117277:174..5461622815690.290483-CDS-M-pyrifera_M_contig117277:174..546Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117277 175..546 +
1692277523.4473035-CDS-M-pyrifera_M_contig117277:174..5461692277523.4473035-CDS-M-pyrifera_M_contig117277:174..546Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117277 175..546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117277.3573.1prot_M-pyrifera_M_contig117277.3573.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117277 175..546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117277.3573.1

>prot_M-pyrifera_M_contig117277.3573.1 ID=prot_M-pyrifera_M_contig117277.3573.1|Name=mRNA_M-pyrifera_M_contig117277.3573.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
MLVHAAFAGSLACTIAWAQLPEAKRHYDKGVQLNQRGILVEASVMLTEAL
AIDPEYAEAYYQRGLSFLGMGRNQHAIKDFTAAAGHGIRQLDPYLRLIKW
HTDRRQYAAGLIVTDQLAANMPEN
back to top

mRNA from alignment at M-pyrifera_M_contig117277:151..546+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117277.3573.1 ID=mRNA_M-pyrifera_M_contig117277.3573.1|Name=mRNA_M-pyrifera_M_contig117277.3573.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig117277:151..546+ (Macrocystis pyrifera P11B4 male)
GATCTCACCCGGCGCACGCTCAAGATGCTGGTGCACGCTGCGTTCGCCGG
ATCCCTTGCCTGCACAATCGCATGGGCACAATTGCCGGAAGCCAAACGCC
ATTATGACAAGGGAGTTCAGTTGAACCAACGGGGCATACTGGTCGAGGCC
AGCGTCATGCTTACCGAGGCGTTGGCGATCGATCCGGAATATGCCGAGGC
TTACTATCAACGTGGCCTCAGTTTTCTCGGCATGGGTCGCAACCAGCACG
CCATAAAGGATTTCACCGCAGCAGCGGGCCACGGTATTCGCCAGCTCGAT
CCCTATTTGCGTCTGATCAAATGGCACACGGACCGCCGGCAATACGCCGC
GGGGCTCATTGTGACGGACCAACTGGCGGCCAATATGCCGGAAAAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig117277:151..546+

>mRNA_M-pyrifera_M_contig117277.3573.1 ID=mRNA_M-pyrifera_M_contig117277.3573.1|Name=mRNA_M-pyrifera_M_contig117277.3573.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig117277:151..546+ (Macrocystis pyrifera P11B4 male)
ATGCTGGTGCACGCTGCGTTCGCCGGATCCCTTGCCTGCACAATCGCATG
GGCACAATTGCCGGAAGCCAAACGCCATTATGACAAGGGAGTTCAGTTGA
ACCAACGGGGCATACTGGTCGAGGCCAGCGTCATGCTTACCGAGGCGTTG
GCGATCGATCCGGAATATGCCGAGGCTTACTATCAACGTGGCCTCAGTTT
TCTCGGCATGGGTCGCAACCAGCACGCCATAAAGGATTTCACCGCAGCAG
CGGGCCACGGTATTCGCCAGCTCGATCCCTATTTGCGTCTGATCAAATGG
CACACGGACCGCCGGCAATACGCCGCGGGGCTCATTGTGACGGACCAACT
GGCGGCCAATATGCCGGAAAACATGCTGGTGCACGCTGCGTTCGCCGGAT
CCCTTGCCTGCACAATCGCATGGGCACAATTGCCGGAAGCCAAACGCCAT
TATGACAAGGGAGTTCAGTTGAACCAACGGGGCATACTGGTCGAGGCCAG
CGTCATGCTTACCGAGGCGTTGGCGATCGATCCGGAATATGCCGAGGCTT
ACTATCAACGTGGCCTCAGTTTTCTCGGCATGGGTCGCAACCAGCACGCC
ATAAAGGATTTCACCGCAGCAGCGGGCCACGGTATTCGCCAGCTCGATCC
CTATTTGCGTCTGATCAAATGGCACACGGACCGCCGGCAATACGCCGCGG
GGCTCATTGTGACGGACCAACTGGCGGCCAATATGCCGGAAAAC
back to top