prot_M-pyrifera_M_contig11726.3568.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig11726.3568.1
Unique Nameprot_M-pyrifera_M_contig11726.3568.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length80
Homology
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BLAST of mRNA_M-pyrifera_M_contig11726.3568.1 vs. uniprot
Match: A0A0U2IAB1_9EUGL (Cytochrome c oxidase subunit 3 n=1 Tax=Perkinsela sp. CCAP 1560/4 TaxID=1314962 RepID=A0A0U2IAB1_9EUGL)

HSP 1 Score: 99.8 bits (247), Expect = 6.120e-24
Identity = 50/70 (71.43%), Postives = 63/70 (90.00%), Query Frame = 0 
Query:    1 MSTTLLLSSGYLTNIAAWALFTYQTNLIIISRLLCILVTFSFILIEYNELKTSSTSFNTDCLNCALITVE 70
            MST +LLSSGYLTNIAAWALFTYQT +II+ RLLC+L  FSFILIE++EL+TS+ +FNT+CL+ +LIT+E
Sbjct:  127 MSTAILLSSGYLTNIAAWALFTYQTYVIIVVRLLCVLAAFSFILIEWHELQTSTPAFNTNCLHSSLITLE 196
[Close]
BLAST of mRNA_M-pyrifera_M_contig11726.3568.1 vs. uniprot
Match: A0A0U2UBM5_9EUGL (Cytochrome c oxidase subunit 3 n=1 Tax=Perkinsela sp. GillNOR1/I TaxID=1766904 RepID=A0A0U2UBM5_9EUGL)

HSP 1 Score: 97.4 bits (241), Expect = 4.850e-23
Identity = 47/70 (67.14%), Postives = 62/70 (88.57%), Query Frame = 0 
Query:    1 MSTTLLLSSGYLTNIAAWALFTYQTNLIIISRLLCILVTFSFILIEYNELKTSSTSFNTDCLNCALITVE 70
            MST +LLSSGYLTNIAAWALFTYQT +II++RLLC++  FSFILIE +EL+TS+ +FNT CL+ +++T+E
Sbjct:  127 MSTAILLSSGYLTNIAAWALFTYQTYIIIVARLLCVIAAFSFILIECHELQTSTPAFNTSCLHSSIVTLE 196
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11726.3568.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0U2IAB1_9EUGL6.120e-2471.43Cytochrome c oxidase subunit 3 n=1 Tax=Perkinsela ... [more]
A0A0U2UBM5_9EUGL4.850e-2367.14Cytochrome c oxidase subunit 3 n=1 Tax=Perkinsela ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 46..79
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 27..45
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..26
NoneNo IPR availableTMHMMTMhelixcoord: 5..24
NoneNo IPR availableTMHMMTMhelixcoord: 28..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11726contigM-pyrifera_M_contig11726:8261..8500 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11726.3568.1mRNA_M-pyrifera_M_contig11726.3568.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig11726 7985..8500 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig11726.3568.1 ID=prot_M-pyrifera_M_contig11726.3568.1|Name=mRNA_M-pyrifera_M_contig11726.3568.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
MSTTLLLSSGYLTNIAAWALFTYQTNLIIISRLLCILVTFSFILIEYNEL
KTSSTSFNTDCLNCALITVEASRGGGVGG*
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