mRNA_M-pyrifera_M_contig117229.3558.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117229.3558.1
Unique NamemRNA_M-pyrifera_M_contig117229.3558.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig117229.3558.1 vs. uniprot
Match: D7G151_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G151_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 2.300e-26
Identity = 51/71 (71.83%), Postives = 58/71 (81.69%), Query Frame = 1 
Query:    1 EFYDEE-GDVCWQRVVSYLRSRAFPLERRRQRLVLTAGERAVAVSDAKIALHGFTQCTFFWLAACRLTRRG 210
            +FYD + GD+CWQRVVSYLR+R  P E  ++R VLTAG RAVAV+D KI LHGF QC FFWLAACRLTRRG
Sbjct:  166 DFYDRQSGDICWQRVVSYLRARKCPRELAQRRQVLTAGGRAVAVADTKIVLHGFVQCLFFWLAACRLTRRG 236
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BLAST of mRNA_M-pyrifera_M_contig117229.3558.1 vs. uniprot
Match: A0A6H5L2H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H8_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 2.040e-25
Identity = 49/71 (69.01%), Postives = 59/71 (83.10%), Query Frame = 1 
Query:    1 EFYDEE-GDVCWQRVVSYLRSRAFPLERRRQRLVLTAGERAVAVSDAKIALHGFTQCTFFWLAACRLTRRG 210
            EF+D + GD+CWQRVVSYLR+R  P E  ++R VLTAG+RA+AV+D +I LHGF QC FFWLAACRLTRRG
Sbjct:  245 EFFDRQSGDICWQRVVSYLRARKSPRELAQRRQVLTAGDRALAVADTQIVLHGFVQCLFFWLAACRLTRRG 315
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117229.3558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G151_ECTSI2.300e-2671.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2H8_9PHAE2.040e-2569.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117229contigM-pyrifera_M_contig117229:186..398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_005290.1
Exons1
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815689.4987466-CDS-M-pyrifera_M_contig117229:185..3981622815689.4987466-CDS-M-pyrifera_M_contig117229:185..398Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117229 186..398 -
1692277523.1795325-CDS-M-pyrifera_M_contig117229:185..3981692277523.1795325-CDS-M-pyrifera_M_contig117229:185..398Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117229 186..398 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117229.3558.1prot_M-pyrifera_M_contig117229.3558.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117229 186..398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117229.3558.1

>prot_M-pyrifera_M_contig117229.3558.1 ID=prot_M-pyrifera_M_contig117229.3558.1|Name=mRNA_M-pyrifera_M_contig117229.3558.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=71bp
EFYDEEGDVCWQRVVSYLRSRAFPLERRRQRLVLTAGERAVAVSDAKIAL
HGFTQCTFFWLAACRLTRRG*
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mRNA from alignment at M-pyrifera_M_contig117229:186..398-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117229.3558.1 ID=mRNA_M-pyrifera_M_contig117229.3558.1|Name=mRNA_M-pyrifera_M_contig117229.3558.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=213bp|location=Sequence derived from alignment at M-pyrifera_M_contig117229:186..398- (Macrocystis pyrifera P11B4 male)
GAATTTTACGACGAGGAAGGAGACGTGTGCTGGCAGCGCGTGGTCTCCTA
CCTTCGATCGCGCGCCTTCCCCCTTGAGCGTCGTCGACAGCGGCTTGTGC
TGACCGCGGGCGAGCGTGCCGTGGCGGTGAGCGATGCCAAGATAGCCCTC
CACGGCTTCACACAGTGCACGTTCTTCTGGCTGGCGGCGTGCCGCCTCAC
TCGCCGGGGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117229:186..398-

>mRNA_M-pyrifera_M_contig117229.3558.1 ID=mRNA_M-pyrifera_M_contig117229.3558.1|Name=mRNA_M-pyrifera_M_contig117229.3558.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig117229:186..398- (Macrocystis pyrifera P11B4 male)
GAATTTTACGACGAGGAAGGAGACGTGTGCTGGCAGCGCGTGGTCTCCTA
CCTTCGATCGCGCGCCTTCCCCCTTGAGCGTCGTCGACAGCGGCTTGTGC
TGACCGCGGGCGAGCGTGCCGTGGCGGTGAGCGATGCCAAGATAGCCCTC
CACGGCTTCACACAGTGCACGTTCTTCTGGCTGGCGGCGTGCCGCCTCAC
TCGCCGGGGGTGAGAATTTTACGACGAGGAAGGAGACGTGTGCTGGCAGC
GCGTGGTCTCCTACCTTCGATCGCGCGCCTTCCCCCTTGAGCGTCGTCGA
CAGCGGCTTGTGCTGACCGCGGGCGAGCGTGCCGTGGCGGTGAGCGATGC
CAAGATAGCCCTCCACGGCTTCACACAGTGCACGTTCTTCTGGCTGGCGG
CGTGCCGCCTCACTCGCCGGGGGTGA
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