mRNA_M-pyrifera_M_contig11719.3554.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11719.3554.1
Unique NamemRNA_M-pyrifera_M_contig11719.3554.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11719.3554.1 vs. uniprot
Match: A0A6H5L4Y4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y4_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 3.760e-33
Identity = 57/105 (54.29%), Postives = 72/105 (68.57%), Query Frame = 1 
Query:    1 QFGVAVPGGVEHARLRARMLHETDNWLALTDCSNAFNTVKRTAVLEEVEKCVPALTPLVAKCYGTRPADVFFRMDSGETRTIACSSGVRQGDPMRPAMFCMALRP 315
            QFGVAV GGVE   + A+++H+T +W+  TDCSNAFNT KRTA++ +  K VP L   +A+CY   PA   + MDSGE RTI C SGV+QGD M P +FC  L P
Sbjct:  113 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVP 217
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BLAST of mRNA_M-pyrifera_M_contig11719.3554.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 3.860e-31
Identity = 57/105 (54.29%), Postives = 72/105 (68.57%), Query Frame = 1 
Query:    1 QFGVAVPGGVEHARLRARMLHETDNWLALTDCSNAFNTVKRTAVLEEVEKCVPALTPLVAKCYGTRPADVFFRMDSGETRTIACSSGVRQGDPMRPAMFCMALRP 315
            QFGVAV GGVE   + A+++H+T +W+  TDCSNAFNT KRTA++ +  K VP L   +A+CY   PA   + MDSGE RTI C SGV+QGD M P +FC  L P
Sbjct:  112 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFTLVP 216
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BLAST of mRNA_M-pyrifera_M_contig11719.3554.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 4.430e-31
Identity = 57/105 (54.29%), Postives = 72/105 (68.57%), Query Frame = 1 
Query:    1 QFGVAVPGGVEHARLRARMLHETDNWLALTDCSNAFNTVKRTAVLEEVEKCVPALTPLVAKCYGTRPADVFFRMDSGETRTIACSSGVRQGDPMRPAMFCMALRP 315
            QFGVAV GGVE   + A+++H+T +W+  TDCSNAFNT KRTA++ +  K VP L   +A+CY   PA   + MDSGE RTI C SGV+QGD M P +FC  L P
Sbjct:  480 QFGVAVAGGVEQVAIDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQASKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVP 584
[Close]
BLAST of mRNA_M-pyrifera_M_contig11719.3554.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 6.200e-31
Identity = 57/105 (54.29%), Postives = 72/105 (68.57%), Query Frame = 1 
Query:    1 QFGVAVPGGVEHARLRARMLHETDNWLALTDCSNAFNTVKRTAVLEEVEKCVPALTPLVAKCYGTRPADVFFRMDSGETRTIACSSGVRQGDPMRPAMFCMALRP 315
            QFGVAV GGVE   + A+++H+T +W+  TDCSNAFNT KRTA++ +  K VP L   +A+CY   PA   + MDSGE RTI C SGV+QGD M P +FC  L P
Sbjct:  502 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVP 606
[Close]
BLAST of mRNA_M-pyrifera_M_contig11719.3554.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 6.320e-31
Identity = 57/105 (54.29%), Postives = 72/105 (68.57%), Query Frame = 1 
Query:    1 QFGVAVPGGVEHARLRARMLHETDNWLALTDCSNAFNTVKRTAVLEEVEKCVPALTPLVAKCYGTRPADVFFRMDSGETRTIACSSGVRQGDPMRPAMFCMALRP 315
            QFGVAV GGVE   + A+++H+T +W+  TDCSNAFNT KRTA++ +  K VP L   +A+CY   PA   + MDSGE RTI C SGV+QGD M P +FC  L P
Sbjct:  481 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVP 585
[Close]
BLAST of mRNA_M-pyrifera_M_contig11719.3554.1 vs. uniprot
Match: A0A6H5KA96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA96_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 8.400e-31
Identity = 57/105 (54.29%), Postives = 72/105 (68.57%), Query Frame = 1 
Query:    1 QFGVAVPGGVEHARLRARMLHETDNWLALTDCSNAFNTVKRTAVLEEVEKCVPALTPLVAKCYGTRPADVFFRMDSGETRTIACSSGVRQGDPMRPAMFCMALRP 315
            QFGVAV GGVE   + A+++H+T +W+  TDCSNAFNT KRTA++ +  K VP L   +A+CY   PA   + MDSGE RTI C SGV+QGD M P +FC  L P
Sbjct:  488 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGEHRTIECKSGVQQGDGMGPPLFCFILVP 592
[Close]
BLAST of mRNA_M-pyrifera_M_contig11719.3554.1 vs. uniprot
Match: A0A6H5KAK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK8_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.120e-30
Identity = 57/105 (54.29%), Postives = 72/105 (68.57%), Query Frame = 1 
Query:    1 QFGVAVPGGVEHARLRARMLHETDNWLALTDCSNAFNTVKRTAVLEEVEKCVPALTPLVAKCYGTRPADVFFRMDSGETRTIACSSGVRQGDPMRPAMFCMALRP 315
            QFGVAV GGVE   + A+++H+T +W+  TDCSNAFNT KRTA++ +  K VP L   +A+CY   PA   + MDSGE RTI C SGV+QGD M P +FC  L P
Sbjct:  431 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKNVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVP 535
[Close]
BLAST of mRNA_M-pyrifera_M_contig11719.3554.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.720e-30
Identity = 56/105 (53.33%), Postives = 71/105 (67.62%), Query Frame = 1 
Query:    1 QFGVAVPGGVEHARLRARMLHETDNWLALTDCSNAFNTVKRTAVLEEVEKCVPALTPLVAKCYGTRPADVFFRMDSGETRTIACSSGVRQGDPMRPAMFCMALRP 315
            QFG AV GGVE   + A+++H+T +W+  TDCSNAFNT KRTA++ +  K VP L   +A+CY   PA   + MDSGE RTI C SGV+QGD M P +FC  L P
Sbjct:   28 QFGAAVVGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVP 132
[Close]
BLAST of mRNA_M-pyrifera_M_contig11719.3554.1 vs. uniprot
Match: A0A6H5KR59_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR59_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 2.820e-30
Identity = 55/105 (52.38%), Postives = 70/105 (66.67%), Query Frame = 1 
Query:    1 QFGVAVPGGVEHARLRARMLHETDNWLALTDCSNAFNTVKRTAVLEEVEKCVPALTPLVAKCYGTRPADVFFRMDSGETRTIACSSGVRQGDPMRPAMFCMALRP 315
            QFGVAV GGVE   + A+++H+T +W+  TDCSNAFNT KRTA++ +  K VP L   +A+CY   PA   + MDSG  RTI C  GV+QGD M P +FC  L P
Sbjct:  203 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGARRTIECKGGVQQGDGMGPPLFCFILVP 307
[Close]
BLAST of mRNA_M-pyrifera_M_contig11719.3554.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 3.040e-30
Identity = 55/105 (52.38%), Postives = 73/105 (69.52%), Query Frame = 1 
Query:    1 QFGVAVPGGVEHARLRARMLHETDNWLALTDCSNAFNTVKRTAVLEEVEKCVPALTPLVAKCYGTRPADVFFRMDSGETRTIACSSGVRQGDPMRPAMFCMALRP 315
            QFGVAV GGVE   + A+++H+T NW+  TDCSNAFNT KRTA++ +  K +P L   +A+CY   PA   + MDSGE RT+ C+SGV+QGD M P +F + L P
Sbjct:  651 QFGVAVAGGVERVAMEAQLVHQTGNWIIQTDCSNAFNTGKRTAIMAQAAKSLPDLVGYIARCYDEIPATAVYEMDSGERRTLECTSGVQQGDGMGPPLFSLILIP 755
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11719.3554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4Y4_9PHAE3.760e-3354.29Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LL14_9PHAE3.860e-3154.29Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KKQ2_9PHAE4.430e-3154.29Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JI32_9PHAE6.200e-3154.29Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMQ2_9PHAE6.320e-3154.29Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KA96_9PHAE8.400e-3154.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAK8_9PHAE1.120e-3054.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYJ9_9PHAE2.720e-3053.33Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KR59_9PHAE2.820e-3052.38Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JH58_9PHAE3.040e-3052.38Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11719contigM-pyrifera_M_contig11719:4739..5062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score65.1
Seed ortholog evalue2.3e-08
Seed eggNOG ortholog400682.PAC_15725343
Hectar predicted targeting categoryother localisation
EggNOG OGs2D43P@1,2STRT@2759,3AAAX@33154
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815689.0895245-CDS-M-pyrifera_M_contig11719:4738..50621622815689.0895245-CDS-M-pyrifera_M_contig11719:4738..5062Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11719 4739..5062 +
1692277522.8982372-CDS-M-pyrifera_M_contig11719:4738..50621692277522.8982372-CDS-M-pyrifera_M_contig11719:4738..5062Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11719 4739..5062 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11719.3554.1prot_M-pyrifera_M_contig11719.3554.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11719 4739..5062 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11719.3554.1

>prot_M-pyrifera_M_contig11719.3554.1 ID=prot_M-pyrifera_M_contig11719.3554.1|Name=mRNA_M-pyrifera_M_contig11719.3554.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
QFGVAVPGGVEHARLRARMLHETDNWLALTDCSNAFNTVKRTAVLEEVEK
CVPALTPLVAKCYGTRPADVFFRMDSGETRTIACSSGVRQGDPMRPAMFC
MALRPGLK
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mRNA from alignment at M-pyrifera_M_contig11719:4739..5062+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11719.3554.1 ID=mRNA_M-pyrifera_M_contig11719.3554.1|Name=mRNA_M-pyrifera_M_contig11719.3554.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig11719:4739..5062+ (Macrocystis pyrifera P11B4 male)
CAATTTGGGGTCGCCGTACCCGGGGGAGTGGAGCATGCGAGATTGAGGGC
TAGGATGCTACACGAGACGGACAACTGGCTTGCTCTCACGGACTGCTCCA
ACGCCTTCAACACCGTGAAAAGGACGGCGGTGCTAGAAGAGGTGGAAAAA
TGCGTGCCAGCGCTTACGCCTTTAGTGGCCAAGTGCTACGGCACAAGACC
AGCCGACGTGTTTTTCCGGATGGACTCAGGAGAGACCAGGACGATCGCTT
GCTCCAGCGGTGTCCGGCAAGGGGACCCCATGAGGCCAGCAATGTTCTGC
ATGGCGTTGCGACCGGGGCTGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11719:4739..5062+

>mRNA_M-pyrifera_M_contig11719.3554.1 ID=mRNA_M-pyrifera_M_contig11719.3554.1|Name=mRNA_M-pyrifera_M_contig11719.3554.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig11719:4739..5062+ (Macrocystis pyrifera P11B4 male)
CAATTTGGGGTCGCCGTACCCGGGGGAGTGGAGCATGCGAGATTGAGGGC
TAGGATGCTACACGAGACGGACAACTGGCTTGCTCTCACGGACTGCTCCA
ACGCCTTCAACACCGTGAAAAGGACGGCGGTGCTAGAAGAGGTGGAAAAA
TGCGTGCCAGCGCTTACGCCTTTAGTGGCCAAGTGCTACGGCACAAGACC
AGCCGACGTGTTTTTCCGGATGGACTCAGGAGAGACCAGGACGATCGCTT
GCTCCAGCGGTGTCCGGCAAGGGGACCCCATGAGGCCAGCAATGTTCTGC
ATGGCGTTGCGACCGGGGCTGAAGCAATTTGGGGTCGCCGTACCCGGGGG
AGTGGAGCATGCGAGATTGAGGGCTAGGATGCTACACGAGACGGACAACT
GGCTTGCTCTCACGGACTGCTCCAACGCCTTCAACACCGTGAAAAGGACG
GCGGTGCTAGAAGAGGTGGAAAAATGCGTGCCAGCGCTTACGCCTTTAGT
GGCCAAGTGCTACGGCACAAGACCAGCCGACGTGTTTTTCCGGATGGACT
CAGGAGAGACCAGGACGATCGCTTGCTCCAGCGGTGTCCGGCAAGGGGAC
CCCATGAGGCCAGCAATGTTCTGCATGGCGTTGCGACCGGGGCTGAAG
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