mRNA_M-pyrifera_M_contig117152.3547.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117152.3547.1
Unique NamemRNA_M-pyrifera_M_contig117152.3547.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig117152.3547.1 vs. uniprot
Match: A0A2E7L9W6_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7L9W6_9PLAN)

HSP 1 Score: 90.1 bits (222), Expect = 3.390e-19
Identity = 39/62 (62.90%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:   73 AGSFQLSVVDESGEPLPCRVLVKTEEGECIIPEQAVTLQTGRDLWFVSNGRTKLSVPNGQIL 258
            A  F+LS+VD SG+ LPCRVLVK E+G C +P+ A TLQTGRDLWFVS+G+TK+ V +G++L
Sbjct:   16 AAPFKLSIVDRSGKRLPCRVLVKAEDGTCFVPQAATTLQTGRDLWFVSSGQTKVDVTSGRVL 77
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BLAST of mRNA_M-pyrifera_M_contig117152.3547.1 vs. uniprot
Match: A0A2D5SA42_9PLAN (Carb-bd_dom_fam9 domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D5SA42_9PLAN)

HSP 1 Score: 81.6 bits (200), Expect = 3.450e-16
Identity = 33/62 (53.23%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:   73 AGSFQLSVVDESGEPLPCRVLVKTEEGECIIPEQAVTLQTGRDLWFVSNGRTKLSVPNGQIL 258
            A +  L+ +DE GEPLPCR+LV+  +G C +P+ AVTLQTG+D WF+S+GR +++VPNG  +
Sbjct:   34 ADTLVLTTLDEFGEPLPCRILVRGSDGRCAVPDDAVTLQTGQDRWFMSSGRCRVNVPNGDAM 95
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BLAST of mRNA_M-pyrifera_M_contig117152.3547.1 vs. uniprot
Match: A0A2E8D560_9PLAN (Carb-bd_dom_fam9 domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8D560_9PLAN)

HSP 1 Score: 70.5 bits (171), Expect = 2.900e-12
Identity = 29/59 (49.15%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:   73 AGSFQLSVVDESGEPLPCRVLVKTEEGECIIPEQAVTLQTGRDLWFVSNGRTKLSVPNG 249
            AG  +L  +DESG+PLPCR+LV+  +  C +   +VT+ TGRD WF+S+GR ++ VP G
Sbjct:   25 AGQLELITLDESGDPLPCRILVRGTDDRCAVLADSVTVDTGRDRWFMSSGRCRVDVPYG 83
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117152.3547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2E7L9W6_9PLAN3.390e-1962.90Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A2D5SA42_9PLAN3.450e-1653.23Carb-bd_dom_fam9 domain-containing protein n=1 Tax... [more]
A0A2E8D560_9PLAN2.900e-1249.15Carb-bd_dom_fam9 domain-containing protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117152contigM-pyrifera_M_contig117152:3..260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size258
Cds size258
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815688.8271763-CDS-M-pyrifera_M_contig117152:2..2601622815688.8271763-CDS-M-pyrifera_M_contig117152:2..260Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117152 3..260 -
1692277522.8125143-CDS-M-pyrifera_M_contig117152:2..2601692277522.8125143-CDS-M-pyrifera_M_contig117152:2..260Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117152 3..260 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117152.3547.1prot_M-pyrifera_M_contig117152.3547.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117152 3..260 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117152.3547.1

>prot_M-pyrifera_M_contig117152.3547.1 ID=prot_M-pyrifera_M_contig117152.3547.1|Name=mRNA_M-pyrifera_M_contig117152.3547.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=86bp
MKHSITGFVAALAVFTIGTLRMGLAGSFQLSVVDESGEPLPCRVLVKTEE
GECIIPEQAVTLQTGRDLWFVSNGRTKLSVPNGQIL
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mRNA from alignment at M-pyrifera_M_contig117152:3..260-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117152.3547.1 ID=mRNA_M-pyrifera_M_contig117152.3547.1|Name=mRNA_M-pyrifera_M_contig117152.3547.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig117152:3..260- (Macrocystis pyrifera P11B4 male)
ATGAAACACTCCATCACCGGTTTCGTAGCCGCTTTGGCCGTGTTTACGAT
CGGCACTCTCCGCATGGGACTGGCCGGTTCTTTTCAGCTCTCGGTCGTCG
ACGAATCCGGGGAGCCACTGCCCTGCCGCGTGCTTGTCAAAACTGAGGAG
GGTGAATGCATCATTCCGGAGCAGGCAGTGACGCTTCAGACCGGTCGCGA
TTTGTGGTTTGTCTCGAACGGCCGGACGAAGCTGAGCGTTCCCAATGGCC
AGATTCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117152:3..260-

>mRNA_M-pyrifera_M_contig117152.3547.1 ID=mRNA_M-pyrifera_M_contig117152.3547.1|Name=mRNA_M-pyrifera_M_contig117152.3547.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig117152:3..260- (Macrocystis pyrifera P11B4 male)
ATGAAACACTCCATCACCGGTTTCGTAGCCGCTTTGGCCGTGTTTACGAT
CGGCACTCTCCGCATGGGACTGGCCGGTTCTTTTCAGCTCTCGGTCGTCG
ACGAATCCGGGGAGCCACTGCCCTGCCGCGTGCTTGTCAAAACTGAGGAG
GGTGAATGCATCATTCCGGAGCAGGCAGTGACGCTTCAGACCGGTCGCGA
TTTGTGGTTTGTCTCGAACGGCCGGACGAAGCTGAGCGTTCCCAATGGCC
AGATTCTGATGAAACACTCCATCACCGGTTTCGTAGCCGCTTTGGCCGTG
TTTACGATCGGCACTCTCCGCATGGGACTGGCCGGTTCTTTTCAGCTCTC
GGTCGTCGACGAATCCGGGGAGCCACTGCCCTGCCGCGTGCTTGTCAAAA
CTGAGGAGGGTGAATGCATCATTCCGGAGCAGGCAGTGACGCTTCAGACC
GGTCGCGATTTGTGGTTTGTCTCGAACGGCCGGACGAAGCTGAGCGTTCC
CAATGGCCAGATTCTG
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