mRNA_M-pyrifera_M_contig117134.3545.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig117134.3545.1 vs. uniprot
Match: A0A1Y6EMM3_9GAMM (Co-chaperone protein HscB homolog n=1 Tax=Pseudidiomarina planktonica TaxID=1323738 RepID=A0A1Y6EMM3_9GAMM) HSP 1 Score: 55.5 bits (132), Expect = 8.410e-8 Identity = 30/64 (46.88%), Postives = 41/64 (64.06%), Query Frame = 1
Query: 4 FDLDVASLERAFRARQMLVHPDRHGSRGEEDRERAEVASSALNAAYAALRRPASRAAYIVSGRG 195
F LD A L++ +R Q +HPDR S GE ++ RA ++ LN AY LR+P SRA YI++ RG
Sbjct: 13 FTLDAADLQQRYRQLQQAMHPDRFASSGEREKLRAVQRTAQLNDAYQTLRKPLSRAEYILTLRG 76
BLAST of mRNA_M-pyrifera_M_contig117134.3545.1 vs. uniprot
Match: A0A7V9LBV0_9DELT (Fe-S protein assembly co-chaperone HscB n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V9LBV0_9DELT) HSP 1 Score: 55.5 bits (132), Expect = 9.030e-8 Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 1
Query: 1 RFDLDVASLERAFRARQMLVHPDRHGSRGEEDRERAEVASSALNAAYAALRRPASRAAYIVSGRG 195
R+DLD +LE+AF AR +HPD+ SR +R A A+ ALN AY L++PASRA Y++ G
Sbjct: 18 RYDLDADTLEQAFFARSKELHPDKFASRPANERVAALSAARALNDAYVLLKKPASRAEYLLGREG 82
BLAST of mRNA_M-pyrifera_M_contig117134.3545.1 vs. uniprot
Match: A0A1J5BFG2_9PROT (Co-chaperone protein HscB homolog n=2 Tax=Betaproteobacteria TaxID=28216 RepID=A0A1J5BFG2_9PROT) HSP 1 Score: 52.0 bits (123), Expect = 1.800e-6 Identity = 29/65 (44.62%), Postives = 42/65 (64.62%), Query Frame = 1
Query: 1 RFDLDVASLERAFRARQMLVHPDRHGSRGEEDRERAEVASSALNAAYAALRRPASRAAYIVSGRG 195
RF +D A+LERAFRA Q VHPDR+ R + ++ + ++ +N AY LR P +RA Y++ RG
Sbjct: 16 RFRIDEAALERAFRALQAEVHPDRYAHRPQTEQRLSMQWATRVNEAYRTLRAPLARARYLLGLRG 80
BLAST of mRNA_M-pyrifera_M_contig117134.3545.1 vs. uniprot
Match: A0A3N9RDW2_9RHOB (Co-chaperone protein HscB homolog n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A3N9RDW2_9RHOB) HSP 1 Score: 52.0 bits (123), Expect = 1.840e-6 Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 1
Query: 1 RFDLDVASLERAFRARQMLVHPDRHGSRGEEDRERAEVASSALNAAYAALRRPASRAAYIVSGRG 195
RF LD+A LER +RA VHPDR S + +R RA + ++ +N AY L++P SRA Y++S G
Sbjct: 18 RFALDLAVLERNWRAIAAEVHPDRFASAPDAERRRALMVATRVNEAYQTLKKPISRARYLLSLAG 82
BLAST of mRNA_M-pyrifera_M_contig117134.3545.1 vs. uniprot
Match: A0A6L5JUN3_RHOTE (Co-chaperone protein HscB homolog n=2 Tax=Rhodocyclus TaxID=1064 RepID=A0A6L5JUN3_RHOTE) HSP 1 Score: 50.8 bits (120), Expect = 6.970e-6 Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 1
Query: 4 FDLDVASLERAFRARQMLVHPDRHGSRGEEDRERAEVASSALNAAYAALRRPASRAAYIVSGRG 195
F +D A+LER +RA Q HPDR + G+ +R RA ++ +N AY L++P SRA Y+++ G
Sbjct: 43 FRIDTAALERNYRALQAQTHPDRFVTAGDSERRRALQWATRVNEAYETLKKPLSRARYLLAELG 106
BLAST of mRNA_M-pyrifera_M_contig117134.3545.1 vs. uniprot
Match: A0A7Z6ZUR7_9GAMM (Co-chaperone protein HscB homolog n=1 Tax=Pseudidiomarina aestuarii TaxID=624146 RepID=A0A7Z6ZUR7_9GAMM) HSP 1 Score: 49.3 bits (116), Expect = 1.620e-5 Identity = 27/64 (42.19%), Postives = 38/64 (59.38%), Query Frame = 1
Query: 4 FDLDVASLERAFRARQMLVHPDRHGSRGEEDRERAEVASSALNAAYAALRRPASRAAYIVSGRG 195
F +D A L++ +R Q +HPDR + + D+ A +S LN AY LRRP SRA Y++ RG
Sbjct: 13 FAIDAAELQQRYRKLQQTLHPDRFANASQRDKLLAVQRTSQLNDAYQTLRRPLSRAEYMLELRG 76
BLAST of mRNA_M-pyrifera_M_contig117134.3545.1 vs. uniprot
Match: A0A066VVQ6_TILAU (Co-chaperone Hsc20 n=1 Tax=Tilletiaria anomala (strain ATCC 24038 / CBS 436.72 / UBC 951) TaxID=1037660 RepID=A0A066VVQ6_TILAU) HSP 1 Score: 49.3 bits (116), Expect = 1.750e-5 Identity = 25/60 (41.67%), Postives = 38/60 (63.33%), Query Frame = 1
Query: 4 FDLDVASLERAFRARQMLVHPDRHGSRGEEDRERAEVASSALNAAYAALRRPASRAAYIV 183
+D+D A L+ +R L HPDR G R + +++ AE S+ +N AY LR+P SRA Y++
Sbjct: 7 WDVDEAQLKATWRRMMALTHPDRMGDRSKREQQIAEQQSALVNKAYETLRKPLSRAVYLL 66
BLAST of mRNA_M-pyrifera_M_contig117134.3545.1 vs. uniprot
Match: A0A2E9SKE6_9GAMM (Co-chaperone protein HscB homolog n=2 Tax=Spongiibacter TaxID=630749 RepID=A0A2E9SKE6_9GAMM) HSP 1 Score: 48.9 bits (115), Expect = 2.650e-5 Identity = 29/64 (45.31%), Postives = 36/64 (56.25%), Query Frame = 1
Query: 4 FDLDVASLERAFRARQMLVHPDRHGSRGEEDRERAEVASSALNAAYAALRRPASRAAYIVSGRG 195
FD+D ASL RA+R Q VHPDR + +R A SS +N AY LR RAAY++ G
Sbjct: 18 FDVDEASLTRAYRELQRSVHPDRFAGGSDRERRLAVQKSSQINEAYETLRSVTRRAAYLLKLAG 81
BLAST of mRNA_M-pyrifera_M_contig117134.3545.1 vs. uniprot
Match: UPI0010F442BD (Fe-S protein assembly co-chaperone HscB n=1 Tax=Chitinivorax sp. B TaxID=2502235 RepID=UPI0010F442BD) HSP 1 Score: 48.9 bits (115), Expect = 2.680e-5 Identity = 25/61 (40.98%), Postives = 41/61 (67.21%), Query Frame = 1
Query: 1 RFDLDVASLERAFRARQMLVHPDRHGSRGEEDRERAEVASSALNAAYAALRRPASRAAYIV 183
RF+LD+++LE+A+R Q VHPDR+ + ++ R+ ++ N AY LR+P SRA Y++
Sbjct: 18 RFELDLSALEQAYRRVQSEVHPDRYAHLSDAEKRRSLQWATQTNEAYQTLRKPLSRARYLL 78
BLAST of mRNA_M-pyrifera_M_contig117134.3545.1 vs. uniprot
Match: A0A3M1D407_9DELT (J domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1D407_9DELT) HSP 1 Score: 48.9 bits (115), Expect = 3.030e-5 Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 1
Query: 1 RFDLDVASLERAFRARQMLVHPDRHGSRGEEDRERAEVASSALNAAYAALRRPASRAAYIVSG 189
R+ LD ++RA+RAR LVHPDR R +R + ++A+N A ALR P R YIV+G
Sbjct: 39 RWHLDAGEIDRAWRARSRLVHPDRFAGRSAVERRMSLQWTAAINGARRALRDPIRRGWYIVTG 101 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117134.3545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig117134.3545.1 >prot_M-pyrifera_M_contig117134.3545.1 ID=prot_M-pyrifera_M_contig117134.3545.1|Name=mRNA_M-pyrifera_M_contig117134.3545.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp RFDLDVASLERAFRARQMLVHPDRHGSRGEEDRERAEVASSALNAAYAALback to top mRNA from alignment at M-pyrifera_M_contig117134:358..555- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig117134.3545.1 ID=mRNA_M-pyrifera_M_contig117134.3545.1|Name=mRNA_M-pyrifera_M_contig117134.3545.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=198bp|location=Sequence derived from alignment at M-pyrifera_M_contig117134:358..555- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig117134:358..555- >mRNA_M-pyrifera_M_contig117134.3545.1 ID=mRNA_M-pyrifera_M_contig117134.3545.1|Name=mRNA_M-pyrifera_M_contig117134.3545.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig117134:358..555- (Macrocystis pyrifera P11B4 male)back to top |