mRNA_M-pyrifera_M_contig117134.3545.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117134.3545.1
Unique NamemRNA_M-pyrifera_M_contig117134.3545.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117134.3545.1 vs. uniprot
Match: A0A1Y6EMM3_9GAMM (Co-chaperone protein HscB homolog n=1 Tax=Pseudidiomarina planktonica TaxID=1323738 RepID=A0A1Y6EMM3_9GAMM)

HSP 1 Score: 55.5 bits (132), Expect = 8.410e-8
Identity = 30/64 (46.88%), Postives = 41/64 (64.06%), Query Frame = 1
Query:    4 FDLDVASLERAFRARQMLVHPDRHGSRGEEDRERAEVASSALNAAYAALRRPASRAAYIVSGRG 195
            F LD A L++ +R  Q  +HPDR  S GE ++ RA   ++ LN AY  LR+P SRA YI++ RG
Sbjct:   13 FTLDAADLQQRYRQLQQAMHPDRFASSGEREKLRAVQRTAQLNDAYQTLRKPLSRAEYILTLRG 76          
BLAST of mRNA_M-pyrifera_M_contig117134.3545.1 vs. uniprot
Match: A0A7V9LBV0_9DELT (Fe-S protein assembly co-chaperone HscB n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V9LBV0_9DELT)

HSP 1 Score: 55.5 bits (132), Expect = 9.030e-8
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    1 RFDLDVASLERAFRARQMLVHPDRHGSRGEEDRERAEVASSALNAAYAALRRPASRAAYIVSGRG 195
            R+DLD  +LE+AF AR   +HPD+  SR   +R  A  A+ ALN AY  L++PASRA Y++   G
Sbjct:   18 RYDLDADTLEQAFFARSKELHPDKFASRPANERVAALSAARALNDAYVLLKKPASRAEYLLGREG 82          
BLAST of mRNA_M-pyrifera_M_contig117134.3545.1 vs. uniprot
Match: A0A1J5BFG2_9PROT (Co-chaperone protein HscB homolog n=2 Tax=Betaproteobacteria TaxID=28216 RepID=A0A1J5BFG2_9PROT)

HSP 1 Score: 52.0 bits (123), Expect = 1.800e-6
Identity = 29/65 (44.62%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    1 RFDLDVASLERAFRARQMLVHPDRHGSRGEEDRERAEVASSALNAAYAALRRPASRAAYIVSGRG 195
            RF +D A+LERAFRA Q  VHPDR+  R + ++  +   ++ +N AY  LR P +RA Y++  RG
Sbjct:   16 RFRIDEAALERAFRALQAEVHPDRYAHRPQTEQRLSMQWATRVNEAYRTLRAPLARARYLLGLRG 80          
BLAST of mRNA_M-pyrifera_M_contig117134.3545.1 vs. uniprot
Match: A0A3N9RDW2_9RHOB (Co-chaperone protein HscB homolog n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A3N9RDW2_9RHOB)

HSP 1 Score: 52.0 bits (123), Expect = 1.840e-6
Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    1 RFDLDVASLERAFRARQMLVHPDRHGSRGEEDRERAEVASSALNAAYAALRRPASRAAYIVSGRG 195
            RF LD+A LER +RA    VHPDR  S  + +R RA + ++ +N AY  L++P SRA Y++S  G
Sbjct:   18 RFALDLAVLERNWRAIAAEVHPDRFASAPDAERRRALMVATRVNEAYQTLKKPISRARYLLSLAG 82          
BLAST of mRNA_M-pyrifera_M_contig117134.3545.1 vs. uniprot
Match: A0A6L5JUN3_RHOTE (Co-chaperone protein HscB homolog n=2 Tax=Rhodocyclus TaxID=1064 RepID=A0A6L5JUN3_RHOTE)

HSP 1 Score: 50.8 bits (120), Expect = 6.970e-6
Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 1
Query:    4 FDLDVASLERAFRARQMLVHPDRHGSRGEEDRERAEVASSALNAAYAALRRPASRAAYIVSGRG 195
            F +D A+LER +RA Q   HPDR  + G+ +R RA   ++ +N AY  L++P SRA Y+++  G
Sbjct:   43 FRIDTAALERNYRALQAQTHPDRFVTAGDSERRRALQWATRVNEAYETLKKPLSRARYLLAELG 106          
BLAST of mRNA_M-pyrifera_M_contig117134.3545.1 vs. uniprot
Match: A0A7Z6ZUR7_9GAMM (Co-chaperone protein HscB homolog n=1 Tax=Pseudidiomarina aestuarii TaxID=624146 RepID=A0A7Z6ZUR7_9GAMM)

HSP 1 Score: 49.3 bits (116), Expect = 1.620e-5
Identity = 27/64 (42.19%), Postives = 38/64 (59.38%), Query Frame = 1
Query:    4 FDLDVASLERAFRARQMLVHPDRHGSRGEEDRERAEVASSALNAAYAALRRPASRAAYIVSGRG 195
            F +D A L++ +R  Q  +HPDR  +  + D+  A   +S LN AY  LRRP SRA Y++  RG
Sbjct:   13 FAIDAAELQQRYRKLQQTLHPDRFANASQRDKLLAVQRTSQLNDAYQTLRRPLSRAEYMLELRG 76          
BLAST of mRNA_M-pyrifera_M_contig117134.3545.1 vs. uniprot
Match: A0A066VVQ6_TILAU (Co-chaperone Hsc20 n=1 Tax=Tilletiaria anomala (strain ATCC 24038 / CBS 436.72 / UBC 951) TaxID=1037660 RepID=A0A066VVQ6_TILAU)

HSP 1 Score: 49.3 bits (116), Expect = 1.750e-5
Identity = 25/60 (41.67%), Postives = 38/60 (63.33%), Query Frame = 1
Query:    4 FDLDVASLERAFRARQMLVHPDRHGSRGEEDRERAEVASSALNAAYAALRRPASRAAYIV 183
            +D+D A L+  +R    L HPDR G R + +++ AE  S+ +N AY  LR+P SRA Y++
Sbjct:    7 WDVDEAQLKATWRRMMALTHPDRMGDRSKREQQIAEQQSALVNKAYETLRKPLSRAVYLL 66          
BLAST of mRNA_M-pyrifera_M_contig117134.3545.1 vs. uniprot
Match: A0A2E9SKE6_9GAMM (Co-chaperone protein HscB homolog n=2 Tax=Spongiibacter TaxID=630749 RepID=A0A2E9SKE6_9GAMM)

HSP 1 Score: 48.9 bits (115), Expect = 2.650e-5
Identity = 29/64 (45.31%), Postives = 36/64 (56.25%), Query Frame = 1
Query:    4 FDLDVASLERAFRARQMLVHPDRHGSRGEEDRERAEVASSALNAAYAALRRPASRAAYIVSGRG 195
            FD+D ASL RA+R  Q  VHPDR     + +R  A   SS +N AY  LR    RAAY++   G
Sbjct:   18 FDVDEASLTRAYRELQRSVHPDRFAGGSDRERRLAVQKSSQINEAYETLRSVTRRAAYLLKLAG 81          
BLAST of mRNA_M-pyrifera_M_contig117134.3545.1 vs. uniprot
Match: UPI0010F442BD (Fe-S protein assembly co-chaperone HscB n=1 Tax=Chitinivorax sp. B TaxID=2502235 RepID=UPI0010F442BD)

HSP 1 Score: 48.9 bits (115), Expect = 2.680e-5
Identity = 25/61 (40.98%), Postives = 41/61 (67.21%), Query Frame = 1
Query:    1 RFDLDVASLERAFRARQMLVHPDRHGSRGEEDRERAEVASSALNAAYAALRRPASRAAYIV 183
            RF+LD+++LE+A+R  Q  VHPDR+    + ++ R+   ++  N AY  LR+P SRA Y++
Sbjct:   18 RFELDLSALEQAYRRVQSEVHPDRYAHLSDAEKRRSLQWATQTNEAYQTLRKPLSRARYLL 78          
BLAST of mRNA_M-pyrifera_M_contig117134.3545.1 vs. uniprot
Match: A0A3M1D407_9DELT (J domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1D407_9DELT)

HSP 1 Score: 48.9 bits (115), Expect = 3.030e-5
Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 1
Query:    1 RFDLDVASLERAFRARQMLVHPDRHGSRGEEDRERAEVASSALNAAYAALRRPASRAAYIVSG 189
            R+ LD   ++RA+RAR  LVHPDR   R   +R  +   ++A+N A  ALR P  R  YIV+G
Sbjct:   39 RWHLDAGEIDRAWRARSRLVHPDRFAGRSAVERRMSLQWTAAINGARRALRDPIRRGWYIVTG 101          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117134.3545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A1Y6EMM3_9GAMM8.410e-846.88Co-chaperone protein HscB homolog n=1 Tax=Pseudidi... [more]
A0A7V9LBV0_9DELT9.030e-847.69Fe-S protein assembly co-chaperone HscB n=1 Tax=De... [more]
A0A1J5BFG2_9PROT1.800e-644.62Co-chaperone protein HscB homolog n=2 Tax=Betaprot... [more]
A0A3N9RDW2_9RHOB1.840e-646.15Co-chaperone protein HscB homolog n=2 Tax=Proteoba... [more]
A0A6L5JUN3_RHOTE6.970e-642.19Co-chaperone protein HscB homolog n=2 Tax=Rhodocyc... [more]
A0A7Z6ZUR7_9GAMM1.620e-542.19Co-chaperone protein HscB homolog n=1 Tax=Pseudidi... [more]
A0A066VVQ6_TILAU1.750e-541.67Co-chaperone Hsc20 n=1 Tax=Tilletiaria anomala (st... [more]
A0A2E9SKE6_9GAMM2.650e-545.31Co-chaperone protein HscB homolog n=2 Tax=Spongiib... [more]
UPI0010F442BD2.680e-540.98Fe-S protein assembly co-chaperone HscB n=1 Tax=Ch... [more]
A0A3M1D407_9DELT3.030e-544.44J domain-containing protein n=1 Tax=Deltaproteobac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117134contigM-pyrifera_M_contig117134:358..555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.8
Seed ortholog evalue7e-08
Seed eggNOG ortholog70448.A0A090M4C2
KEGG koko:K04082
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006790,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016226,GO:0022607,GO:0031163,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0051186,GO:0071840
EggNOG free text desc.HSCB C-terminal oligomerisation domain
EggNOG OGs34IGY@3041,37SK0@33090,COG1076@1,KOG3192@2759
COG Functional cat.O
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko03110
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815688.7483566-CDS-M-pyrifera_M_contig117134:357..5551622815688.7483566-CDS-M-pyrifera_M_contig117134:357..555Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117134 358..555 -
1692277522.7782693-CDS-M-pyrifera_M_contig117134:357..5551692277522.7782693-CDS-M-pyrifera_M_contig117134:357..555Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117134 358..555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117134.3545.1prot_M-pyrifera_M_contig117134.3545.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117134 358..555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117134.3545.1

>prot_M-pyrifera_M_contig117134.3545.1 ID=prot_M-pyrifera_M_contig117134.3545.1|Name=mRNA_M-pyrifera_M_contig117134.3545.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
RFDLDVASLERAFRARQMLVHPDRHGSRGEEDRERAEVASSALNAAYAAL
RRPASRAAYIVSGRGW
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mRNA from alignment at M-pyrifera_M_contig117134:358..555-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117134.3545.1 ID=mRNA_M-pyrifera_M_contig117134.3545.1|Name=mRNA_M-pyrifera_M_contig117134.3545.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=198bp|location=Sequence derived from alignment at M-pyrifera_M_contig117134:358..555- (Macrocystis pyrifera P11B4 male)
CGGTTCGACCTGGACGTGGCGAGTCTGGAGAGGGCGTTCCGGGCGAGGCA AATGCTCGTGCACCCAGACCGGCACGGCAGCCGCGGGGAGGAGGACAGAG AACGCGCAGAAGTCGCCTCCTCCGCCCTCAACGCCGCTTACGCCGCCCTC CGAAGACCAGCGTCCAGAGCAGCATACATCGTAAGTGGTCGGGGTTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117134:358..555-

>mRNA_M-pyrifera_M_contig117134.3545.1 ID=mRNA_M-pyrifera_M_contig117134.3545.1|Name=mRNA_M-pyrifera_M_contig117134.3545.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig117134:358..555- (Macrocystis pyrifera P11B4 male)
CGGTTCGACCTGGACGTGGCGAGTCTGGAGAGGGCGTTCCGGGCGAGGCA
AATGCTCGTGCACCCAGACCGGCACGGCAGCCGCGGGGAGGAGGACAGAG
AACGCGCAGAAGTCGCCTCCTCCGCCCTCAACGCCGCTTACGCCGCCCTC
CGAAGACCAGCGTCCAGAGCAGCATACATCGTAAGTGGTCGGGGTTGGCG
GTTCGACCTGGACGTGGCGAGTCTGGAGAGGGCGTTCCGGGCGAGGCAAA
TGCTCGTGCACCCAGACCGGCACGGCAGCCGCGGGGAGGAGGACAGAGAA
CGCGCAGAAGTCGCCTCCTCCGCCCTCAACGCCGCTTACGCCGCCCTCCG
AAGACCAGCGTCCAGAGCAGCATACATCGTAAGTGGTCGGGGTTGG
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