mRNA_M-pyrifera_M_contig117120.3539.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig117120.3539.1 vs. uniprot
Match: A0A7X6APA5_9ACTN (Elongation factor Ts n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6APA5_9ACTN) HSP 1 Score: 284 bits (727), Expect = 1.310e-94 Identity = 148/182 (81.32%), Postives = 167/182 (91.76%), Query Frame = 1
Query: 4 MSISAKDVKALRDATGAGMMDAKKALTECNGDMVAATQLLREKGLAKAADRGDRENNEGTIALAADGNTAALVQIKTETDFSAKNEAVTGLAQTLADAVLADGPGAIDAAATSIEDLQVTIKENIAVGAVERIEAADGNIVDTYLHVQDGRGVNAVVVEGSGVSQDDLHQVALHIAFAKPSY 549
MSISA+DVKALRDATGAGMMDAKKALTE +GDM AATQLLREKGL KAA+R R+N+EG+IAL ADGN AALVQIKTETDFSAKNEAVTGLA TLA+AVLADGPG +D +++DL+VTIKENI +GAVERIEAA+GNI+DTYLH QDGRGVNAVVVEGSGVS++DLHQVALHIAFA+P+Y
Sbjct: 1 MSISAQDVKALRDATGAGMMDAKKALTETDGDMEAATQLLREKGLTKAAERAGRDNDEGSIALVADGNVAALVQIKTETDFSAKNEAVTGLASTLAEAVLADGPGVVDEHGAALDDLKVTIKENIELGAVERIEAAEGNILDTYLHTQDGRGVNAVVVEGSGVSREDLHQVALHIAFARPTY 182
BLAST of mRNA_M-pyrifera_M_contig117120.3539.1 vs. uniprot
Match: A0A2D8GGF3_9ACTN (Elongation factor Ts n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8GGF3_9ACTN) HSP 1 Score: 274 bits (700), Expect = 3.440e-90 Identity = 144/183 (78.69%), Postives = 163/183 (89.07%), Query Frame = 1
Query: 1 EMSISAKDVKALRDATGAGMMDAKKALTECNGDMVAATQLLREKGLAKAADRGDRENNEGTIALAADGNTAALVQIKTETDFSAKNEAVTGLAQTLADAVLADGPGAIDAAATSIEDLQVTIKENIAVGAVERIEAADGNIVDTYLHVQDGRGVNAVVVEGSGVSQDDLHQVALHIAFAKPSY 549
+MS +AKDVKALRDATGAGMMDAKKAL +GDM AA Q LREKGLAKA R DR+N+EGT+A+A DGNTAA+VQIKTETDFSAKN AVT LAQTLADAVL GPGA+DA A +I+DL+VTIKENI +GAVE+I AADGNI+DTYLH QDGRGVNAVVVEG+GVSQ+DLHQVALH+AFAKP+Y
Sbjct: 22 DMSFTAKDVKALRDATGAGMMDAKKALEAADGDMEAAKQALREKGLAKADARSDRDNDEGTVAIAVDGNTAAVVQIKTETDFSAKNNAVTTLAQTLADAVLTGGPGAVDAHADAIDDLKVTIKENIELGAVEQIIAADGNILDTYLHSQDGRGVNAVVVEGNGVSQEDLHQVALHVAFAKPTY 204
BLAST of mRNA_M-pyrifera_M_contig117120.3539.1 vs. uniprot
Match: A0A7K1ZH16_9ACTN (Elongation factor Ts n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1ZH16_9ACTN) HSP 1 Score: 268 bits (684), Expect = 1.500e-87 Identity = 142/183 (77.60%), Postives = 159/183 (86.89%), Query Frame = 1
Query: 1 EMSISAKDVKALRDATGAGMMDAKKALTECNGDMVAATQLLREKGLAKAADRGDRENNEGTIALAADGNTAALVQIKTETDFSAKNEAVTGLAQTLADAVLADGPGAIDAAATSIEDLQVTIKENIAVGAVERIEAADGNIVDTYLHVQDGRGVNAVVVEGSGVSQDDLHQVALHIAFAKPSY 549
+MSISAKDVKALRDATGAGMMDAKK+L EC+GDM AATQLLREKGLAKAA R DR+N+EGTIALAA N AA+VQIKTETDFSAK++AVT LA +AD VL GPGA + + +IEDL+V IKEN+ +G VERIE A GN +DTYLH QDGRGVNAVVVEGSGVS+DDLHQVALHIAFAKPSY
Sbjct: 37 KMSISAKDVKALRDATGAGMMDAKKSLVECDGDMDAATQLLREKGLAKAAARSDRDNDEGTIALAAADNVAAIVQIKTETDFSAKSDAVTSLASAIADDVLMRGPGAANEHSAAIEDLRVKIKENVELGTVERIEGAQGNTIDTYLHSQDGRGVNAVVVEGSGVSRDDLHQVALHIAFAKPSY 219
BLAST of mRNA_M-pyrifera_M_contig117120.3539.1 vs. uniprot
Match: A0A7Y2DGN1_9ACTN (Elongation factor Ts n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DGN1_9ACTN) HSP 1 Score: 244 bits (624), Expect = 6.030e-79 Identity = 129/177 (72.88%), Postives = 145/177 (81.92%), Query Frame = 1
Query: 16 AKDVKALRDATGAGMMDAKKALTECNGDMVAATQLLREKGLAKAADRGDRENNEGTIALAADGNTAALVQIKTETDFSAKNEAVTGLAQTLADAVLADGPGAIDAAATSIEDLQVTIKENIAVGAVERIEAADGNIVDTYLHVQDGRGVNAVVVEGSGVSQDDLHQVALHIAFAKPS 546
AKDVKALRDATGAGMMDAKKALTE +GDM AATQLLREKG+AKAA R DREN EG +A+A ALV +K ETDFSAK++ Q LADAVLADG GA DA +EDL++ +KENI +G +E+I AADGN++DTYLH QDGRGVNAVVVEGSGVSQDDLHQVALHIAFAKPS
Sbjct: 6 AKDVKALRDATGAGMMDAKKALTETDGDMEAATQLLREKGMAKAAGRTDRENAEGAVAVAQGDGVVALVHVKCETDFSAKSDGFLAFTQKLADAVLADGAGAADALTAELEDLKLVLKENIELGRIEQIRAADGNLLDTYLHSQDGRGVNAVVVEGSGVSQDDLHQVALHIAFAKPS 182
BLAST of mRNA_M-pyrifera_M_contig117120.3539.1 vs. uniprot
Match: A0A6B0WKP7_9ACTN (Elongation factor Ts (Fragment) n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B0WKP7_9ACTN) HSP 1 Score: 244 bits (622), Expect = 3.240e-78 Identity = 126/183 (68.85%), Postives = 148/183 (80.87%), Query Frame = 1
Query: 1 EMSISAKDVKALRDATGAGMMDAKKALTECNGDMVAATQLLREKGLAKAADRGDRENNEGTIALAADGNTAALVQIKTETDFSAKNEAVTGLAQTLADAVLADGPGAIDAAATSIEDLQVTIKENIAVGAVERIEAADGNIVDTYLHVQDGRGVNAVVVEGSGVSQDDLHQVALHIAFAKPSY 549
EM++SAKDVKALRD TGAGMMDAKKALT +GDM AA Q+LRE+GLAKA R R+N++G IA+A DG AA+VQ+K ETDFSAKN T L Q LADAVL+ GPGA+D A IEDL++ +KENI VG VE I AADGN++D+YLH QDGRGVNAVVVEGSGV + LHQVALH+AFAKP +
Sbjct: 56 EMAVSAKDVKALRDVTGAGMMDAKKALTSADGDMEAARQILREQGLAKADARSGRDNDQGAIAVAGDGKAAAVVQLKCETDFSAKNAGFTSLVQALADAVLSGGPGAVDTHAAGIEDLKLVLKENIEVGVVEHIRAADGNVLDSYLHRQDGRGVNAVVVEGSGVGAEALHQVALHVAFAKPQF 238
BLAST of mRNA_M-pyrifera_M_contig117120.3539.1 vs. uniprot
Match: A0A6B0ZHL5_9ACTN (Elongation factor Ts n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B0ZHL5_9ACTN) HSP 1 Score: 243 bits (619), Expect = 9.540e-78 Identity = 126/183 (68.85%), Postives = 148/183 (80.87%), Query Frame = 1
Query: 1 EMSISAKDVKALRDATGAGMMDAKKALTECNGDMVAATQLLREKGLAKAADRGDRENNEGTIALAADGNTAALVQIKTETDFSAKNEAVTGLAQTLADAVLADGPGAIDAAATSIEDLQVTIKENIAVGAVERIEAADGNIVDTYLHVQDGRGVNAVVVEGSGVSQDDLHQVALHIAFAKPSY 549
EM++SAKDVKALRD TGAGMMDAKKALT GDM AA Q+LRE+GLAKA R R+N++G IA+A DG AA+VQ+K ETDFSAKNE T L QTLA +VLA GPGA+D A IEDL++ +KENI VG VE ++AADGN +D+Y+H QDGRGVNAVVVEGSGV D LHQVALH+AFAKP +
Sbjct: 33 EMAVSAKDVKALRDFTGAGMMDAKKALTSAGGDMEAARQILREQGLAKADARSGRDNDQGAIAVAGDGRVAAVVQLKCETDFSAKNEGFTSLVQTLAGSVLAGGPGAVDQHAAEIEDLKLVLKENIDVGVVEHLQAADGNFLDSYVHRQDGRGVNAVVVEGSGVDADALHQVALHVAFAKPQF 215
BLAST of mRNA_M-pyrifera_M_contig117120.3539.1 vs. uniprot
Match: A0A2E5NTM0_9ACTN (Elongation factor Ts n=4 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E5NTM0_9ACTN) HSP 1 Score: 237 bits (604), Expect = 6.530e-76 Identity = 125/179 (69.83%), Postives = 146/179 (81.56%), Query Frame = 1
Query: 10 ISAKDVKALRDATGAGMMDAKKALTECNGDMVAATQLLREKGLAKAADRGDRENNEGTIALAADGNTAALVQIKTETDFSAKNEAVTGLAQTLADAVLADGPGAIDAAATSIEDLQVTIKENIAVGAVERIEAADGNIVDTYLHVQDGRGVNAVVVEGSGVSQDDLHQVALHIAFAKPS 546
I+AKDVKALRDATGAGMMDAKKALTEC GD AA+Q+LREKGLAKAA R +R+N EG + LA DG AALV +K ETDFSAK+E L L AVLA+G GAI+ ++SI+DL++TIKENI VG V +EAA+GN++DTYLHVQDGRGVN VVVEGS V Q+ LHQVALHIAFAKP+
Sbjct: 4 ITAKDVKALRDATGAGMMDAKKALTECEGDFEAASQVLREKGLAKAATRSERDNVEGAVGLAVDGCRAALVHLKCETDFSAKSEGFLALVDELTAAVLAEGEGAIETRSSSIDDLRITIKENIEVGTVTLLEAAEGNVLDTYLHVQDGRGVNGVVVEGSDVDQEALHQVALHIAFAKPT 182
BLAST of mRNA_M-pyrifera_M_contig117120.3539.1 vs. uniprot
Match: A0A6B1E8I7_9ACTN (Elongation factor Ts n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1E8I7_9ACTN) HSP 1 Score: 237 bits (604), Expect = 1.630e-75 Identity = 124/183 (67.76%), Postives = 150/183 (81.97%), Query Frame = 1
Query: 1 EMSISAKDVKALRDATGAGMMDAKKALTECNGDMVAATQLLREKGLAKAADRGDRENNEGTIALAADGNTAALVQIKTETDFSAKNEAVTGLAQTLADAVLADGPGAIDAAATSIEDLQVTIKENIAVGAVERIEAADGNIVDTYLHVQDGRGVNAVVVEGSGVSQDDLHQVALHIAFAKPSY 549
+M++SA+DVKALRDATGAGMMDAKKALT +GDM AA Q+LRE+GLAKA R REN++G IA+A +G +AA+VQ+K ETDFSAKNE T L Q LA++VL G GA+D + IEDL++ +KENI VG ER+EAADGNI+D+YLH QDGRGVNAVVVEGSGV + LHQVALHIAFAKP +
Sbjct: 30 DMAVSARDVKALRDATGAGMMDAKKALTAADGDMEAARQILREQGLAKADARTGRENDQGAIAIATNGASAAVVQLKCETDFSAKNERFTSLVQALAESVLDAGAGAVDRHSDEIEDLKLVLKENIQVGVAERLEAADGNILDSYLHRQDGRGVNAVVVEGSGVGAESLHQVALHIAFAKPQF 212
BLAST of mRNA_M-pyrifera_M_contig117120.3539.1 vs. uniprot
Match: A0A3D5K291_9ACTN (Elongation factor Ts n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3D5K291_9ACTN) HSP 1 Score: 236 bits (601), Expect = 1.860e-75 Identity = 124/179 (69.27%), Postives = 145/179 (81.01%), Query Frame = 1
Query: 10 ISAKDVKALRDATGAGMMDAKKALTECNGDMVAATQLLREKGLAKAADRGDRENNEGTIALAADGNTAALVQIKTETDFSAKNEAVTGLAQTLADAVLADGPGAIDAAATSIEDLQVTIKENIAVGAVERIEAADGNIVDTYLHVQDGRGVNAVVVEGSGVSQDDLHQVALHIAFAKPS 546
I+AKDVKALRDATGAGMMDAKKAL E +GD AA Q+LREKGLAKAA R DR+N EG I L ADG AALV +K ETDFSAK++ L L +AVL +G GA+DA +++I+DL+++IKENI VG V IEA DGN++DTYLHVQDGRGVN VVVEGSGV Q+ LHQVALHIAFAKP+
Sbjct: 4 IAAKDVKALRDATGAGMMDAKKALIESDGDFEAAAQMLREKGLAKAATRSDRDNVEGAIGLVADGQRAALVHLKCETDFSAKSDGFLSLVDELTNAVLTEGEGAVDARSSAIDDLRLSIKENIEVGQVSLIEAGDGNMIDTYLHVQDGRGVNGVVVEGSGVDQETLHQVALHIAFAKPT 182
BLAST of mRNA_M-pyrifera_M_contig117120.3539.1 vs. uniprot
Match: A0A2E5P2W9_9ACTN (Elongation factor Ts n=2 Tax=root TaxID=1 RepID=A0A2E5P2W9_9ACTN) HSP 1 Score: 235 bits (600), Expect = 2.640e-75 Identity = 123/181 (67.96%), Postives = 148/181 (81.77%), Query Frame = 1
Query: 4 MSISAKDVKALRDATGAGMMDAKKALTECNGDMVAATQLLREKGLAKAADRGDRENNEGTIALAADGNTAALVQIKTETDFSAKNEAVTGLAQTLADAVLADGPGAIDAAATSIEDLQVTIKENIAVGAVERIEAADGNIVDTYLHVQDGRGVNAVVVEGSGVSQDDLHQVALHIAFAKPS 546
+ I+AKDVKALRDATGAGMMDAK+AL EC+GD AA+Q LREKGLA AA R DREN EG +AL +DG AALV +K ETDFSAK++ L L +AVLA+G A++A +T+I+DL++TIKEN+ VG V IEAA+GN++DTYLHVQDGRGVN VVVEGSGV Q+ LHQVALHIAFAKP+
Sbjct: 2 VDIAAKDVKALRDATGAGMMDAKRALIECDGDFEAASQTLREKGLANAATRSDRENIEGAVALVSDGRRAALVHLKCETDFSAKSDGFLFLVDELVNAVLAEGEAAVEAHSTAIDDLRLTIKENVEVGRVSLIEAAEGNMLDTYLHVQDGRGVNGVVVEGSGVDQETLHQVALHIAFAKPT 182 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117120.3539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig117120.3539.1 >prot_M-pyrifera_M_contig117120.3539.1 ID=prot_M-pyrifera_M_contig117120.3539.1|Name=mRNA_M-pyrifera_M_contig117120.3539.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=182bp MSISAKDVKALRDATGAGMMDAKKALTECNGDMVAATQLLREKGLAKAADback to top mRNA from alignment at M-pyrifera_M_contig117120:1..549- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig117120.3539.1 ID=mRNA_M-pyrifera_M_contig117120.3539.1|Name=mRNA_M-pyrifera_M_contig117120.3539.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=549bp|location=Sequence derived from alignment at M-pyrifera_M_contig117120:1..549- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig117120:1..549- >mRNA_M-pyrifera_M_contig117120.3539.1 ID=mRNA_M-pyrifera_M_contig117120.3539.1|Name=mRNA_M-pyrifera_M_contig117120.3539.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1092bp|location=Sequence derived from alignment at M-pyrifera_M_contig117120:1..549- (Macrocystis pyrifera P11B4 male)back to top |