mRNA_M-pyrifera_M_contig117085.3528.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117085.3528.1
Unique NamemRNA_M-pyrifera_M_contig117085.3528.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig117085.3528.1 vs. uniprot
Match: A0A1F6U0W3_9PROT (Uncharacterized protein n=1 Tax=Candidatus Muproteobacteria bacterium RIFCSPLOWO2_01_FULL_60_18 TaxID=1817768 RepID=A0A1F6U0W3_9PROT)

HSP 1 Score: 54.3 bits (129), Expect = 1.710e-8
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    4 INNRGDIVGQGRINAESHAYLITTVPLPAAASLLFSGILGLSGFARN 144
            IN+ G I+G G IN ++HA+L+T VP+PAA  L  SG++GL GF R 
Sbjct:   22 INDSGQIIGSGIINGQTHAFLMTPVPIPAAFWLFGSGLVGLFGFMRR 68
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BLAST of mRNA_M-pyrifera_M_contig117085.3528.1 vs. uniprot
Match: A0A4R3Y378_9PROT (Putative secreted protein n=2 Tax=Sulfurirhabdus autotrophica TaxID=1706046 RepID=A0A4R3Y378_9PROT)

HSP 1 Score: 57.0 bits (136), Expect = 3.430e-8
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    4 INNRGDIVGQGRINAESHAYLIT--TVPLPAAASLLFSGILGLSGFARN 144
            IN+ G IVG G IN +SHAYL+T   VP+PAAA L  SG+LG++GF R 
Sbjct:  318 INDLGQIVGMGTINGQSHAYLMTPTAVPVPAAAWLFGSGLLGMAGFVRK 366
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BLAST of mRNA_M-pyrifera_M_contig117085.3528.1 vs. uniprot
Match: A0A7C5SQG3_9GAMM (DUF3466 family protein n=1 Tax=Thiotrichales bacterium TaxID=2026796 RepID=A0A7C5SQG3_9GAMM)

HSP 1 Score: 52.8 bits (125), Expect = 4.310e-7
Identity = 25/48 (52.08%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    4 INNRGDIVGQGRINAESHAYLITTVPLPAAASLLFSGILGLSGFARNR 147
            IN+ GDIVG G I   +  ++I+ VP+PAAA L  SG+ GL GF R R
Sbjct:  123 INDNGDIVGYGSIGGVTRGFVISAVPVPAAAWLFLSGLFGLLGFIRRR 170
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BLAST of mRNA_M-pyrifera_M_contig117085.3528.1 vs. uniprot
Match: A0A4R3Y4I4_9PROT (Putative secreted protein n=1 Tax=Sulfurirhabdus autotrophica TaxID=1706046 RepID=A0A4R3Y4I4_9PROT)

HSP 1 Score: 48.1 bits (113), Expect = 4.670e-5
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 DINNRGDIVGQGRINAESHAYLIT--TVPLPAAASLLFSGILGLSGFARNR 147
            DIN+ G IVG G IN +  ++L+T  +VP+PAAA LL SG+LGL   A  R
Sbjct:  324 DINDLGQIVGIGTINGQYRSFLMTPTSVPVPAAAWLLGSGLLGLISVAHKR 374
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117085.3528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A1F6U0W3_9PROT1.710e-853.19Uncharacterized protein n=1 Tax=Candidatus Muprote... [more]
A0A4R3Y378_9PROT3.430e-859.18Putative secreted protein n=2 Tax=Sulfurirhabdus a... [more]
A0A7C5SQG3_9GAMM4.310e-752.08DUF3466 family protein n=1 Tax=Thiotrichales bacte... [more]
A0A4R3Y4I4_9PROT4.670e-552.94Putative secreted protein n=1 Tax=Sulfurirhabdus a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117085contigM-pyrifera_M_contig117085:1..147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815687.755158-CDS-M-pyrifera_M_contig117085:0..1471622815687.755158-CDS-M-pyrifera_M_contig117085:0..147Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117085 1..147 +
1692277522.297937-CDS-M-pyrifera_M_contig117085:0..1471692277522.297937-CDS-M-pyrifera_M_contig117085:0..147Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117085 1..147 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117085.3528.1prot_M-pyrifera_M_contig117085.3528.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117085 1..147 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117085.3528.1

>prot_M-pyrifera_M_contig117085.3528.1 ID=prot_M-pyrifera_M_contig117085.3528.1|Name=mRNA_M-pyrifera_M_contig117085.3528.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp
DINNRGDIVGQGRINAESHAYLITTVPLPAAASLLFSGILGLSGFARNR
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mRNA from alignment at M-pyrifera_M_contig117085:1..147+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117085.3528.1 ID=mRNA_M-pyrifera_M_contig117085.3528.1|Name=mRNA_M-pyrifera_M_contig117085.3528.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=147bp|location=Sequence derived from alignment at M-pyrifera_M_contig117085:1..147+ (Macrocystis pyrifera P11B4 male)
GACATCAACAACCGAGGTGACATTGTTGGTCAGGGGCGCATCAACGCCGA
GTCCCATGCCTATCTTATTACTACGGTACCGCTGCCAGCAGCAGCTTCGC
TTTTGTTTTCAGGGATCCTTGGCTTAAGCGGATTTGCAAGAAATCGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117085:1..147+

>mRNA_M-pyrifera_M_contig117085.3528.1 ID=mRNA_M-pyrifera_M_contig117085.3528.1|Name=mRNA_M-pyrifera_M_contig117085.3528.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig117085:1..147+ (Macrocystis pyrifera P11B4 male)
GACATCAACAACCGAGGTGACATTGTTGGTCAGGGGCGCATCAACGCCGA
GTCCCATGCCTATCTTATTACTACGGTACCGCTGCCAGCAGCAGCTTCGC
TTTTGTTTTCAGGGATCCTTGGCTTAAGCGGATTTGCAAGAAATCGAGAC
ATCAACAACCGAGGTGACATTGTTGGTCAGGGGCGCATCAACGCCGAGTC
CCATGCCTATCTTATTACTACGGTACCGCTGCCAGCAGCAGCTTCGCTTT
TGTTTTCAGGGATCCTTGGCTTAAGCGGATTTGCAAGAAATCGA
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