mRNA_M-pyrifera_M_contig117069.3523.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117069.3523.1
Unique NamemRNA_M-pyrifera_M_contig117069.3523.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117069.3523.1 vs. uniprot
Match: A0A6A5BPR9_NAEFO (USP domain-containing protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BPR9_NAEFO)

HSP 1 Score: 129 bits (325), Expect = 1.340e-31
Identity = 71/179 (39.66%), Postives = 116/179 (64.80%), Query Frame = 1
Query:    1 ALRGYSLVSLPPILTLQLKRFDYNFETWTRIKLNHRMSFPMALKMNRWAQLEPGSEEYQLHSVLVHKGGAMGGHYYAFIRS-AEEKWLRFDDDRVSEATEENVVESFGSGDGTGT---AFSGTAYMLVYRRKDLQSDGHKIE--LVSALLKQEIEQKNVEFLKEKKEFDIRKDTINLQI 519
            A++G  L +LP ILTL LKRFDY+ +TWTRIKL + ++FP  L M ++   + GS  Y L +VL+H G A+GGHYYA+I+S +  KW  F+D  VSE   + V   +G+ D + T   + S  AYML+YR++D   + + +E  ++   L++E+E+ N + ++E ++ +  + ++NL+I
Sbjct:  298 AIKGLKLKTLPYILTLHLKRFDYDLQTWTRIKLGNMVTFPFELDMTKYVTNQSGSYIYDLFAVLIHSGSALGGHYYAYIKSFSTGKWYNFNDSNVSEIDAQQVKLMYGTNDASATGRYSSSTNAYMLLYRKRDEILNINHVEENMIPDDLREEVEKDNEQIVEELRKAEEARQSLNLRI 476          
BLAST of mRNA_M-pyrifera_M_contig117069.3523.1 vs. uniprot
Match: A0A6B2KXQ2_9EUKA (Ubiquitin carboxyl-terminal hydrolase 47 n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KXQ2_9EUKA)

HSP 1 Score: 120 bits (300), Expect = 2.960e-28
Identity = 72/183 (39.34%), Postives = 107/183 (58.47%), Query Frame = 1
Query:    7 RGYSLVSLPPILTLQLKRFDYNFETWTRIKLNHRMSFPMALKMNRWAQLEP--GSEEYQLHSVLVHKGGAMGGHYYAFIRSAE-EKWLRFDDDRVSEATEENVVESFGSG--DGTGTA-------FSGTAYMLVYRRKDLQSDGHKIELVSALLKQEIEQKNVEFLKEKKEFDIRKDTINLQI 519
            +G  L S P  LTLQLKRFDY+++TW RIKLN+R++FP+   +  W   +    S +YQL SVL+H+GGA GGHYYA I     +KW +F+D  V+E   +++   +G    D TG         +S  AY+L YRR+       +   +   +K+ IE++N +F K K+EF  R+D + L +
Sbjct:  168 KGLRLKSTPLFLTLQLKRFDYDYQTWQRIKLNNRVTFPLEFDVKPWLSQDSDANSTKYQLFSVLIHQGGAQGGHYYAIISDVHSKKWYKFNDSSVTEIEAKDIELMYGEQPKDETGPKKIVQGKLYSSNAYLLFYRREGDPIPPERS--IPEYIKKYIEEENEKFTKAKEEFIQRRDNLPLDL 348          
BLAST of mRNA_M-pyrifera_M_contig117069.3523.1 vs. uniprot
Match: D2V7T5_NAEGR (Peptidase C19 family ubiquitinyl hydrolase n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2V7T5_NAEGR)

HSP 1 Score: 119 bits (299), Expect = 4.160e-28
Identity = 66/179 (36.87%), Postives = 109/179 (60.89%), Query Frame = 1
Query:    1 ALRGYSLVSLPPILTLQLKRFDYNFETWTRIKLNHRMSFPMALKMNRWAQLEPGSEEYQLHSVLVHKGGAMGGHYYAFIRS-AEEKWLRFDDDRVSEATEENVVESFGSGDGTGT---AFSGTAYMLVYRRKD--LQSDGHKIELVSALLKQEIEQKNVEFLKEKKEFDIRKDTINLQI 519
            A++G    ++P I TL LKRFDY++ TW RIKL + ++FP  L ++++ +    +  Y+L  VLVH G + GGHYYA+I+S + +KW  F+D  VSE   E V   FG+ D + T   A S  AYML+YR++D  L  +   + ++   LK+E+E+ N +  +E ++ +  +  I +++
Sbjct:  291 AVKGLKFKTIPYIFTLHLKRFDYDYTTWNRIKLGNMVTFPFELDVSKYLEDNTQNAIYELFGVLVHSGTSSGGHYYAYIKSFSSDKWYNFNDSNVSEIDREQVKVMFGNNDSSSTGRFASSTNAYMLLYRKRDEKLNINSVDMSIIPEDLKEEVEKDNEQIEEEVRKSEELRSNITIRV 469          
BLAST of mRNA_M-pyrifera_M_contig117069.3523.1 vs. uniprot
Match: A0A1V9Y287_9ACAR (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9Y287_9ACAR)

HSP 1 Score: 117 bits (292), Expect = 3.530e-27
Identity = 75/186 (40.32%), Postives = 110/186 (59.14%), Query Frame = 1
Query:    1 ALRGYSLVSLPPILTLQLKRFDYNFETWTRIKLNHRMSFPMALKMNRWAQLEPGSEEY--QLHSVLVHKGGAMGGHYYAFIRSAEEKWLRFDDDRVSEATEENVVESFGSGDGTGT----AFSGTAYMLVYRRK---------DLQSDGHKIELVSALLKQEIEQKNVEFLKEKKEFDIRKDTINL 513
            AL+G   V+ P ILTLQLKRFD+++ T  RIKLN R+ FP  L +N + + +P   EY   L +VLVH G A GGHYYA+IR + + W  F+D++V + + E+V  ++G G  T T    + S  AYML+YR+K         D +   H ++L  +L +++      EFLK+K E D +  T+ L
Sbjct:  196 ALKGLKFVTFPKILTLQLKRFDFDYLTMRRIKLNDRVVFPEELDLNGFIESKPPKSEYVYDLFAVLVHSGSANGGHYYAYIRHSGD-WFCFNDNQVHKVSSEDVKRTYGGGGSTETRSPFSSSTNAYMLIYRQKSEAGALALTDAEFAEHLLKLRQSLNEED------EFLKDKAEKDSKLITVKL 374          
BLAST of mRNA_M-pyrifera_M_contig117069.3523.1 vs. uniprot
Match: UPI00026585D9 (ubiquitin carboxyl-terminal hydrolase 47 n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI00026585D9)

HSP 1 Score: 115 bits (288), Expect = 1.220e-26
Identity = 63/134 (47.01%), Postives = 86/134 (64.18%), Query Frame = 1
Query:    1 ALRGYSLVSLPPILTLQLKRFDYNFETWTRIKLNHRMSFPMALKMNRWAQLEPGSEEY--QLHSVLVHKGGAMGGHYYAFIRSAEEKWLRFDDDRVSEATEENVVESFGSGDGTGT----AFSGTAYMLVYRRK 384
            AL+G   VS P ILTLQLKRFD+++ T  RIKLN R+ FP  L +N + + +P   EY   L +VL+H G A GGHYYA+IR+  + W  F+D++V   T E+V  +FG G  T T    + S  AYML+YR++
Sbjct:  195 ALKGLKFVSFPKILTLQLKRFDFDYLTMRRIKLNDRVEFPEVLDLNGFIESKPPKTEYVYDLFAVLIHSGSANGGHYYAYIRNKTD-WFCFNDNQVHRVTLEDVQRTFGGGGSTDTRSPFSSSTNAYMLIYRQQ 327          
BLAST of mRNA_M-pyrifera_M_contig117069.3523.1 vs. uniprot
Match: A0A7S1KS34_9EUKA (Hypothetical protein n=1 Tax=Percolomonas cosmopolitus TaxID=63605 RepID=A0A7S1KS34_9EUKA)

HSP 1 Score: 111 bits (277), Expect = 3.780e-25
Identity = 61/178 (34.27%), Postives = 101/178 (56.74%), Query Frame = 1
Query:    1 ALRGYSLVSLPPILTLQLKRFDYNFETWTRIKLNHRMSFPMALKMNRWAQLEPGSE-EYQLHSVLVHKGGAMGGHYYAFIRS-AEEKWLRFDDDRVSEATEENVVESFGSGDGTGTAFSGTAYMLVYRRKDLQSDGHKI---ELVSALLKQEIEQKNVEFLKEKKEFDIRKDTINLQI 519
            A +G+   + P ILTL LKRFDY+  TW  +KL+HR+ FP  L +  +       E  Y+L S L+H G    GHYYA+I++ A  KW  F+D  V E + E+V + +G  +   +  S  AYML+YRR D   D + +   E +   L+Q +   N ++ ++++  ++R++T+  ++
Sbjct:  302 ATKGFRFENFPSILTLHLKRFDYDRRTWQPVKLSHRIEFPFELDLKGYVPENYSQETRYELFSCLIHSGSVRSGHYYAYIKNMANNKWYEFNDSNVREISIEDVQKMYGRDEDISSYSSTNAYMLMYRRVDSMRDNNTVFHSEFIPEDLQQWVSDLNEKWEEDRQREELRRNTLTFRV 479          
BLAST of mRNA_M-pyrifera_M_contig117069.3523.1 vs. uniprot
Match: A0A7M7JGW3_VARDE (USP domain-containing protein n=2 Tax=Varroa TaxID=62624 RepID=A0A7M7JGW3_VARDE)

HSP 1 Score: 110 bits (276), Expect = 5.170e-25
Identity = 61/134 (45.52%), Postives = 85/134 (63.43%), Query Frame = 1
Query:    1 ALRGYSLVSLPPILTLQLKRFDYNFETWTRIKLNHRMSFPMALKMNRWAQLEPGSEEY--QLHSVLVHKGGAMGGHYYAFIRSAEEKWLRFDDDRVSEATEENVVESFGSGDGTGT----AFSGTAYMLVYRRK 384
            AL+G   ++ P ILTLQLKRFD+++ T  RIKLN R+ FP  L +N + + +P   EY   L +VLVH G A GGHYYA+IR   + W  F+D++V +   E+V  ++G G  T T    + S  AYML+YR+K
Sbjct:  196 ALKGLKFLTFPKILTLQLKRFDFDYLTMRRIKLNDRVEFPEELDLNAFIESKPPKSEYVYNLFAVLVHSGSANGGHYYAYIRHKSD-WFCFNDNQVHKVGSEDVWRTYGGGGYTETRSPFSSSTNAYMLIYRQK 328          
BLAST of mRNA_M-pyrifera_M_contig117069.3523.1 vs. uniprot
Match: A0A670HS80_PODMU (Ubiquitin carboxyl-terminal hydrolase 47 n=7 Tax=Episquamata TaxID=1329912 RepID=A0A670HS80_PODMU)

HSP 1 Score: 110 bits (274), Expect = 9.590e-25
Identity = 62/147 (42.18%), Postives = 92/147 (62.59%), Query Frame = 1
Query:    1 ALRGYSLVSLPPILTLQLKRFDYNFETWTRIKLNHRMSFPMALKMNRWAQLEP-GSEEYQLHSVLVHKGGAMGGHYYAFIRS-AEEKWLRFDDDRVSEATEENVVESFGSGDGT----GTAFSGT--AYMLVYRRKDLQSDGHKIEL 417
            A +G   +  P +LTLQLKRFD+++ T  RIKLN RM+FP  L M  +  +E   S  Y+L SV+VH G A GGHYYA I+S  +++W  F+D  VS+ T E++ +++G   G+     +AF+ +  AYML+YR KD   +   +E+
Sbjct:  373 ARKGLRFLHFPYLLTLQLKRFDFDYTTMHRIKLNDRMTFPEELDMGSFIDIEDENSLLYELFSVMVHSGSAAGGHYYACIKSFTDDQWYSFNDQHVSKITHEDIKKTYGGTSGSRGYYSSAFASSTNAYMLIYRLKDTTRNAKFLEV 519          
BLAST of mRNA_M-pyrifera_M_contig117069.3523.1 vs. uniprot
Match: UPI001CDB781B (ubiquitin carboxyl-terminal hydrolase 47 isoform X2 n=1 Tax=Gambusia affinis TaxID=33528 RepID=UPI001CDB781B)

HSP 1 Score: 108 bits (270), Expect = 3.300e-24
Identity = 59/137 (43.07%), Postives = 91/137 (66.42%), Query Frame = 1
Query:    1 ALRGYSLVSLPPILTLQLKRFDYNFETWTRIKLNHRMSFPMALKMNRWAQLEPGSE-EYQLHSVLVHKGGAMGGHYYAFIRS-AEEKWLRFDDDRVSEATEENVVESFGSGDGT----GTAFSGT--AYMLVYRRKD 387
            A +G   +  P +LTLQLKRFD+++ T  RIKLN RM+FP  L M+ +  +E  S   ++L SV+VH G A GGHYYA+I+S ++ +W  F+D  VS+ T++++ +++G   G+     +AF+ +  AYML+YR KD
Sbjct:  357 ARKGLRFLHFPYLLTLQLKRFDFDYTTMHRIKLNDRMTFPEELDMSPFIDVEDESLLTFELFSVMVHSGSAAGGHYYAYIKSFSDGQWYSFNDQHVSKITQDDIRKTYGGSSGSRGYYSSAFASSTNAYMLIYRLKD 493          
BLAST of mRNA_M-pyrifera_M_contig117069.3523.1 vs. uniprot
Match: A0A2K3DKA3_CHLRE (Ubiquitinyl hydrolase 1 n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DKA3_CHLRE)

HSP 1 Score: 108 bits (269), Expect = 4.500e-24
Identity = 65/149 (43.62%), Postives = 87/149 (58.39%), Query Frame = 1
Query:    1 ALRGYSLVSLPPILTLQLKRFDYNFETWTRIKLNHRMSFPMALKMNRWA----------QLEPGS-----EEYQLHSVLVHKGGAMGGHYYAFIRSAEEKWLRFDDDRVSEATEENVVES-FGSGDGTGT------AFSGTAYMLVYRR 381
            A +G    S PP+L LQLKRF+Y+F+  + +K+N R  F   L ++R A          QL  GS       Y+LHSVLVH GG  GGHYYA+IR   ++WL+FDDDRV++A   + +E  +G+GD +G       A    AYMLVY R
Sbjct:  364 ARKGILFESFPPVLQLQLKRFEYDFQRDSMVKINDRYEFYDELDLDREAGKFLSPTGAQQLSTGSLSAPRNTYKLHSVLVHSGGVHGGHYYAYIRPDGQQWLKFDDDRVTKAEPHDALEGQYGTGDDSGYGSNLKFAKCSNAYMLVYVR 512          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117069.3523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A5BPR9_NAEFO1.340e-3139.66USP domain-containing protein n=2 Tax=Naegleria Ta... [more]
A0A6B2KXQ2_9EUKA2.960e-2839.34Ubiquitin carboxyl-terminal hydrolase 47 n=1 Tax=A... [more]
D2V7T5_NAEGR4.160e-2836.87Peptidase C19 family ubiquitinyl hydrolase n=1 Tax... [more]
A0A1V9Y287_9ACAR3.530e-2740.32Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Trop... [more]
UPI00026585D91.220e-2647.01ubiquitin carboxyl-terminal hydrolase 47 n=1 Tax=G... [more]
A0A7S1KS34_9EUKA3.780e-2534.27Hypothetical protein n=1 Tax=Percolomonas cosmopol... [more]
A0A7M7JGW3_VARDE5.170e-2545.52USP domain-containing protein n=2 Tax=Varroa TaxID... [more]
A0A670HS80_PODMU9.590e-2542.18Ubiquitin carboxyl-terminal hydrolase 47 n=7 Tax=E... [more]
UPI001CDB781B3.300e-2443.07ubiquitin carboxyl-terminal hydrolase 47 isoform X... [more]
A0A2K3DKA3_CHLRE4.500e-2443.62Ubiquitinyl hydrolase 1 n=1 Tax=Chlamydomonas rein... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117069contigM-pyrifera_M_contig117069:32..553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue6.8e-26
Seed eggNOG ortholog5762.XP_002679670.1
KEGG koko:K11857
Hectar predicted targeting categoryother localisation
EggNOG free text desc.thiol-dependent ubiquitin-specific protease activity
EggNOG OGsCOG5077@1,KOG4598@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons1
Model size522
Cds size522
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815687.5445778-CDS-M-pyrifera_M_contig117069:31..5531622815687.5445778-CDS-M-pyrifera_M_contig117069:31..553Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117069 32..553 -
1692277522.209993-CDS-M-pyrifera_M_contig117069:31..5531692277522.209993-CDS-M-pyrifera_M_contig117069:31..553Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117069 32..553 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117069.3523.1prot_M-pyrifera_M_contig117069.3523.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117069 32..553 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117069.3523.1

>prot_M-pyrifera_M_contig117069.3523.1 ID=prot_M-pyrifera_M_contig117069.3523.1|Name=mRNA_M-pyrifera_M_contig117069.3523.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=174bp
ALRGYSLVSLPPILTLQLKRFDYNFETWTRIKLNHRMSFPMALKMNRWAQ
LEPGSEEYQLHSVLVHKGGAMGGHYYAFIRSAEEKWLRFDDDRVSEATEE
NVVESFGSGDGTGTAFSGTAYMLVYRRKDLQSDGHKIELVSALLKQEIEQ
KNVEFLKEKKEFDIRKDTINLQIQ
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mRNA from alignment at M-pyrifera_M_contig117069:32..553-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117069.3523.1 ID=mRNA_M-pyrifera_M_contig117069.3523.1|Name=mRNA_M-pyrifera_M_contig117069.3523.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig117069:32..553- (Macrocystis pyrifera P11B4 male)
GCCTTGCGTGGGTATTCACTGGTCAGCCTCCCACCGATCCTTACGTTACA GTTGAAGCGGTTTGACTACAACTTTGAGACATGGACGAGGATCAAGCTGA ACCATCGTATGAGCTTCCCTATGGCCCTCAAGATGAACAGGTGGGCTCAG TTGGAGCCTGGTTCCGAGGAATACCAGCTCCATTCTGTGCTGGTCCACAA GGGAGGGGCAATGGGAGGCCATTACTACGCCTTCATCCGATCCGCTGAGG AGAAATGGCTGAGATTCGACGATGACCGAGTATCAGAGGCCACTGAAGAG AATGTGGTGGAGAGCTTTGGCTCTGGCGACGGCACTGGCACGGCCTTCTC TGGCACGGCATACATGCTGGTGTACCGTCGGAAGGACCTGCAGTCAGACG GACACAAGATAGAGCTGGTGTCGGCATTGCTCAAGCAAGAGATTGAGCAG AAGAACGTGGAATTCTTGAAGGAGAAGAAAGAGTTCGACATCAGAAAGGA TACTATCAACCTCCAGATCCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117069:32..553-

>mRNA_M-pyrifera_M_contig117069.3523.1 ID=mRNA_M-pyrifera_M_contig117069.3523.1|Name=mRNA_M-pyrifera_M_contig117069.3523.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1044bp|location=Sequence derived from alignment at M-pyrifera_M_contig117069:32..553- (Macrocystis pyrifera P11B4 male)
GCCTTGCGTGGGTATTCACTGGTCAGCCTCCCACCGATCCTTACGTTACA
GTTGAAGCGGTTTGACTACAACTTTGAGACATGGACGAGGATCAAGCTGA
ACCATCGTATGAGCTTCCCTATGGCCCTCAAGATGAACAGGTGGGCTCAG
TTGGAGCCTGGTTCCGAGGAATACCAGCTCCATTCTGTGCTGGTCCACAA
GGGAGGGGCAATGGGAGGCCATTACTACGCCTTCATCCGATCCGCTGAGG
AGAAATGGCTGAGATTCGACGATGACCGAGTATCAGAGGCCACTGAAGAG
AATGTGGTGGAGAGCTTTGGCTCTGGCGACGGCACTGGCACGGCCTTCTC
TGGCACGGCATACATGCTGGTGTACCGTCGGAAGGACCTGCAGTCAGACG
GACACAAGATAGAGCTGGTGTCGGCATTGCTCAAGCAAGAGATTGAGCAG
AAGAACGTGGAATTCTTGAAGGAGAAGAAAGAGTTCGACATCAGAAAGGA
TACTATCAACCTCCAGATCCAGGCCTTGCGTGGGTATTCACTGGTCAGCC
TCCCACCGATCCTTACGTTACAGTTGAAGCGGTTTGACTACAACTTTGAG
ACATGGACGAGGATCAAGCTGAACCATCGTATGAGCTTCCCTATGGCCCT
CAAGATGAACAGGTGGGCTCAGTTGGAGCCTGGTTCCGAGGAATACCAGC
TCCATTCTGTGCTGGTCCACAAGGGAGGGGCAATGGGAGGCCATTACTAC
GCCTTCATCCGATCCGCTGAGGAGAAATGGCTGAGATTCGACGATGACCG
AGTATCAGAGGCCACTGAAGAGAATGTGGTGGAGAGCTTTGGCTCTGGCG
ACGGCACTGGCACGGCCTTCTCTGGCACGGCATACATGCTGGTGTACCGT
CGGAAGGACCTGCAGTCAGACGGACACAAGATAGAGCTGGTGTCGGCATT
GCTCAAGCAAGAGATTGAGCAGAAGAACGTGGAATTCTTGAAGGAGAAGA
AAGAGTTCGACATCAGAAAGGATACTATCAACCTCCAGATCCAG
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