mRNA_M-pyrifera_M_contig116936.3505.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116936.3505.1
Unique NamemRNA_M-pyrifera_M_contig116936.3505.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig116936.3505.1 vs. uniprot
Match: A0A3D5DEY2_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A3D5DEY2_9GAMM)

HSP 1 Score: 124 bits (312), Expect = 1.300e-31
Identity = 58/123 (47.15%), Postives = 88/123 (71.54%), Query Frame = 1 
Query:   16 WITKIFDSVSDVEQSDWDSIVEPGNLLKSHAYLSAVEASEIEHVRYYFPVIQDRSGKTLAHACVYVIDTDLSQLLPHRLSQLAKLIRKVWQRFLIFKVTDCAIPLSTGNSISTTREFDKRLLI 384
            + TKI+ S+ +++   WDSI+    L++SHAYL+AVEA+ IE  +Y++PVI D +G+ +AHACVY I TD +QLLP+ L+  + L R+VW+RFL  ++T+CA PLS  +SIS     +++ LI
Sbjct:   15 YCTKIYTSIHEIDAGAWDSILGENGLIRSHAYLAAVEAASIEDCKYFYPVITDLNGQIVAHACVYTIVTDFAQLLPNSLTWFSHLARRVWKRFLHVRITECASPLSASHSISIISGTERKSLI 137
[Close]
BLAST of mRNA_M-pyrifera_M_contig116936.3505.1 vs. uniprot
Match: A0A523P6C3_9PROT (GNAT family N-acetyltransferase n=2 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523P6C3_9PROT)

HSP 1 Score: 115 bits (288), Expect = 6.690e-28
Identity = 55/124 (44.35%), Postives = 83/124 (66.94%), Query Frame = 1 
Query:   22 TKIFDSVSDVEQSDWDSIVEPGNLLKSHAYLSAVEASEIEHVRYYFPVIQDRSGKTLAHACVYVIDTDLSQLLPHRLSQLAKLIRKVWQRFLIFKVTDCAIPLSTGNSISTTREFDKRLLISHL 393
            T I+DS+ D+    WD+I+    L++SHAYL+A+EAS I+  RY++PVI + SG+ +AHACVY I TD +QLLP  +  L +  R + + FL  ++T+CA PL+  +SIS  R  D++ LI  +
Sbjct:   62 TVIYDSIHDIPPHAWDAIIGANALVRSHAYLAAIEASSIDGCRYFYPVITNESGQIVAHACVYTIVTDFAQLLPSGVGWLVRAARYLHKHFLQIRITECASPLTASHSISILRGTDRKTLIGQI 185
[Close]
BLAST of mRNA_M-pyrifera_M_contig116936.3505.1 vs. uniprot
Match: A0A257Y0A3_9PROT (Uncharacterized protein n=4 Tax=unclassified Hydrogenophilales TaxID=1798413 RepID=A0A257Y0A3_9PROT)

HSP 1 Score: 93.6 bits (231), Expect = 5.630e-20
Identity = 47/115 (40.87%), Postives = 69/115 (60.00%), Query Frame = 1 
Query:   25 KIFDSVSDVEQSDWDSIVEPGNLLKSHAYLSAVEASEIEHVRYYFPVIQDRSGKTLAHACVYVIDTDLSQLLPHRLSQLAKLIRKVWQRFLIFKVTDCAIPLSTGNSISTTREFD 369
            K++ S++DV +++WDSI+E    + SHAYL AVEASEI    Y +PV+ D  G+ +AH CV+ I TDL+         L   IR+V+  FL  ++ +C  P++ G  IS  R  D
Sbjct:    4 KVYSSITDVAEAEWDSILERDATICSHAYLKAVEASEINDCVYRYPVVYDAQGQLIAHTCVFSITTDLALFARGATLALVHGIRRVFPGFLTIRMLECGTPVALGRQISLRRGTD 118
[Close]
BLAST of mRNA_M-pyrifera_M_contig116936.3505.1 vs. uniprot
Match: A0A1G0Y947_9BACT (Uncharacterized protein n=2 Tax=PVC group TaxID=1783257 RepID=A0A1G0Y947_9BACT)

HSP 1 Score: 92.4 bits (228), Expect = 1.360e-19
Identity = 43/122 (35.25%), Postives = 71/122 (58.20%), Query Frame = 1 
Query:   28 IFDSVSDVEQSDWDSIVEPGNLLKSHAYLSAVEASEIEHVRYYFPVIQDRSGKTLAHACVYVIDTDLSQLLPHRLSQLAKLIRKVWQRFLIFKVTDCAIPLSTGNSISTTREFDKRLLISHL 393
            +  S++ +++  W+ IV P  L+  H+YL AVE+S+I   RYY+P++ +  G+ LAHAC+Y I T+L       L +L  LIR+ W  F++    +C  P++ GN+ S     D+  L+  L
Sbjct:    6 LLTSITQIDEHQWNEIVVPNRLICRHSYLRAVESSQINQCRYYYPIVVE-DGQILAHACLYTITTELDSFARGALKRLITLIRRRWPNFMVLHSLECGTPVALGNTFSFRAGADRAKLMEAL 126
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116936.3505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A3D5DEY2_9GAMM1.300e-3147.15Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
A0A523P6C3_9PROT6.690e-2844.35GNAT family N-acetyltransferase n=2 Tax=Proteobact... [more]
A0A257Y0A3_9PROT5.630e-2040.87Uncharacterized protein n=4 Tax=unclassified Hydro... [more]
A0A1G0Y947_9BACT1.360e-1935.25Uncharacterized protein n=2 Tax=PVC group TaxID=17... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116936contigM-pyrifera_M_contig116936:2..394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score81.6
Seed ortholog evalue2.9e-13
Seed eggNOG ortholog292415.Tbd_0667
Preferred namebioF2
KEGG rclassRC00004,RC00039,RC02725
KEGG koko:K00652
KEGG ReactionR03210,R10124
KEGG Pathwayko00780,ko01100,map00780,map01100
KEGG ModuleM00123,M00573,M00577
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944
EggNOG free text desc.Peptidogalycan biosysnthesis/recognition
EggNOG OGsCOG3146@1,COG3146@2
EC2.3.1.47
COG Functional cat.S
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Exons1
Model size393
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815686.4408998-CDS-M-pyrifera_M_contig116936:1..3941622815686.4408998-CDS-M-pyrifera_M_contig116936:1..394Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116936 2..394 -
1692277521.5445218-CDS-M-pyrifera_M_contig116936:1..3941692277521.5445218-CDS-M-pyrifera_M_contig116936:1..394Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116936 2..394 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116936.3505.1prot_M-pyrifera_M_contig116936.3505.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116936 2..394 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116936.3505.1

>prot_M-pyrifera_M_contig116936.3505.1 ID=prot_M-pyrifera_M_contig116936.3505.1|Name=mRNA_M-pyrifera_M_contig116936.3505.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
EPHPEWITKIFDSVSDVEQSDWDSIVEPGNLLKSHAYLSAVEASEIEHVR
YYFPVIQDRSGKTLAHACVYVIDTDLSQLLPHRLSQLAKLIRKVWQRFLI
FKVTDCAIPLSTGNSISTTREFDKRLLISHL
back to top

mRNA from alignment at M-pyrifera_M_contig116936:2..394-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116936.3505.1 ID=mRNA_M-pyrifera_M_contig116936.3505.1|Name=mRNA_M-pyrifera_M_contig116936.3505.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=393bp|location=Sequence derived from alignment at M-pyrifera_M_contig116936:2..394- (Macrocystis pyrifera P11B4 male)
GAACCCCATCCCGAATGGATAACGAAAATATTCGATTCGGTATCCGACGT
TGAACAATCCGATTGGGACTCCATAGTTGAGCCCGGTAATTTACTAAAAT
CGCACGCATATCTAAGCGCCGTAGAAGCGTCCGAAATCGAGCACGTACGG
TATTATTTTCCCGTAATCCAGGATCGATCGGGCAAAACGCTCGCTCATGC
CTGCGTTTACGTCATCGACACCGACTTGTCTCAGCTATTACCGCATCGTT
TATCGCAGCTAGCGAAATTAATCCGAAAAGTCTGGCAGCGATTTCTCATT
TTCAAGGTAACCGACTGCGCCATCCCGTTATCTACCGGCAACTCCATATC
CACCACCAGGGAATTCGATAAGCGGTTATTGATCAGCCATCTA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig116936:2..394-

>mRNA_M-pyrifera_M_contig116936.3505.1 ID=mRNA_M-pyrifera_M_contig116936.3505.1|Name=mRNA_M-pyrifera_M_contig116936.3505.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig116936:2..394- (Macrocystis pyrifera P11B4 male)
GAACCCCATCCCGAATGGATAACGAAAATATTCGATTCGGTATCCGACGT
TGAACAATCCGATTGGGACTCCATAGTTGAGCCCGGTAATTTACTAAAAT
CGCACGCATATCTAAGCGCCGTAGAAGCGTCCGAAATCGAGCACGTACGG
TATTATTTTCCCGTAATCCAGGATCGATCGGGCAAAACGCTCGCTCATGC
CTGCGTTTACGTCATCGACACCGACTTGTCTCAGCTATTACCGCATCGTT
TATCGCAGCTAGCGAAATTAATCCGAAAAGTCTGGCAGCGATTTCTCATT
TTCAAGGTAACCGACTGCGCCATCCCGTTATCTACCGGCAACTCCATATC
CACCACCAGGGAATTCGATAAGCGGTTATTGATCAGCCATCTAGAACCCC
ATCCCGAATGGATAACGAAAATATTCGATTCGGTATCCGACGTTGAACAA
TCCGATTGGGACTCCATAGTTGAGCCCGGTAATTTACTAAAATCGCACGC
ATATCTAAGCGCCGTAGAAGCGTCCGAAATCGAGCACGTACGGTATTATT
TTCCCGTAATCCAGGATCGATCGGGCAAAACGCTCGCTCATGCCTGCGTT
TACGTCATCGACACCGACTTGTCTCAGCTATTACCGCATCGTTTATCGCA
GCTAGCGAAATTAATCCGAAAAGTCTGGCAGCGATTTCTCATTTTCAAGG
TAACCGACTGCGCCATCCCGTTATCTACCGGCAACTCCATATCCACCACC
AGGGAATTCGATAAGCGGTTATTGATCAGCCATCTA
back to top