mRNA_M-pyrifera_M_contig116923.3501.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116923.3501.1
Unique NamemRNA_M-pyrifera_M_contig116923.3501.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig116923.3501.1 vs. uniprot
Match: A0A3L7QGP9_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7QGP9_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 1.640e-6
Identity = 22/53 (41.51%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:   67 LLSTLIKATIDPESWQDGSGR--IAIHETTSSFIVRQTKENHDQVAEILSKLR 219
            +L+ LI AT++P+SW+  +G+  IA H++T S ++RQT++ H +++++LS+LR
Sbjct: 1044 MLTDLITATVEPDSWEVNAGQASIATHDSTLSLVIRQTQKVHQEISDLLSQLR 1096
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BLAST of mRNA_M-pyrifera_M_contig116923.3501.1 vs. uniprot
Match: A0A517VPY0_9PLAN (Regulatory protein BlaR1 n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VPY0_9PLAN)

HSP 1 Score: 50.4 bits (119), Expect = 1.990e-5
Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:   49 PTFDPSLLSTLIKATIDPESWQDG---SGRIAIHETTSSFIVRQTKENHDQVAEILSKLR 219
            P F+P  L  LIK  + PE+W++    +G I  ++ T S +VR T+E HDQ+ E+L KLR
Sbjct:  858 PRFEP--LIELIKKNVTPENWRNEKKQTGSIMAYKETLSLVVRHTREAHDQITELLQKLR 915
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BLAST of mRNA_M-pyrifera_M_contig116923.3501.1 vs. uniprot
Match: A0A7W0RQK4_9PLAN (Peptidase_M56 domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7W0RQK4_9PLAN)

HSP 1 Score: 49.7 bits (117), Expect = 3.730e-5
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:   40 GDDPTFDPSLLSTLIKATIDPESWQD--GSGRIAIHETTSSFIVRQTKENHDQVAEILSKLR 219
            G  P F+   L  LI  TI+P SW+   G+G I  +E+T S +VRQT++ HDQ+ ++L  LR
Sbjct:  648 GRGPAFE--RLIELITGTIEPGSWETVGGNGVIRANESTLSLVVRQTRQVHDQILDLLDHLR 707
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116923.3501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A3L7QGP9_9BACT1.640e-641.51Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A517VPY0_9PLAN1.990e-543.33Regulatory protein BlaR1 n=2 Tax=Gimesia aquarii T... [more]
A0A7W0RQK4_9PLAN3.730e-543.55Peptidase_M56 domain-containing protein n=1 Tax=Pl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116923contigM-pyrifera_M_contig116923:1..219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815686.2869365-CDS-M-pyrifera_M_contig116923:0..2191622815686.2869365-CDS-M-pyrifera_M_contig116923:0..219Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116923 1..219 +
1692277521.4969866-CDS-M-pyrifera_M_contig116923:0..2191692277521.4969866-CDS-M-pyrifera_M_contig116923:0..219Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116923 1..219 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116923.3501.1prot_M-pyrifera_M_contig116923.3501.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116923 1..219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116923.3501.1

>prot_M-pyrifera_M_contig116923.3501.1 ID=prot_M-pyrifera_M_contig116923.3501.1|Name=mRNA_M-pyrifera_M_contig116923.3501.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=73bp
VADLTVRSVACKNGDDPTFDPSLLSTLIKATIDPESWQDGSGRIAIHETT
SSFIVRQTKENHDQVAEILSKLR
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mRNA from alignment at M-pyrifera_M_contig116923:1..219+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116923.3501.1 ID=mRNA_M-pyrifera_M_contig116923.3501.1|Name=mRNA_M-pyrifera_M_contig116923.3501.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=219bp|location=Sequence derived from alignment at M-pyrifera_M_contig116923:1..219+ (Macrocystis pyrifera P11B4 male)
GTGGCCGATCTGACGGTCAGGTCGGTTGCTTGCAAGAATGGCGATGACCC
CACGTTCGACCCGTCGCTCTTGTCGACCCTGATCAAAGCGACGATTGACC
CGGAGAGTTGGCAGGACGGCAGTGGGCGGATTGCGATCCACGAGACGACC
AGCTCGTTCATCGTGCGGCAAACGAAAGAGAACCATGATCAAGTGGCTGA
GATACTCTCAAAGCTGCGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116923:1..219+

>mRNA_M-pyrifera_M_contig116923.3501.1 ID=mRNA_M-pyrifera_M_contig116923.3501.1|Name=mRNA_M-pyrifera_M_contig116923.3501.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig116923:1..219+ (Macrocystis pyrifera P11B4 male)
GTGGCCGATCTGACGGTCAGGTCGGTTGCTTGCAAGAATGGCGATGACCC
CACGTTCGACCCGTCGCTCTTGTCGACCCTGATCAAAGCGACGATTGACC
CGGAGAGTTGGCAGGACGGCAGTGGGCGGATTGCGATCCACGAGACGACC
AGCTCGTTCATCGTGCGGCAAACGAAAGAGAACCATGATCAAGTGGCTGA
GATACTCTCAAAGCTGCGTGTGGCCGATCTGACGGTCAGGTCGGTTGCTT
GCAAGAATGGCGATGACCCCACGTTCGACCCGTCGCTCTTGTCGACCCTG
ATCAAAGCGACGATTGACCCGGAGAGTTGGCAGGACGGCAGTGGGCGGAT
TGCGATCCACGAGACGACCAGCTCGTTCATCGTGCGGCAAACGAAAGAGA
ACCATGATCAAGTGGCTGAGATACTCTCAAAGCTGCGT
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