mRNA_M-pyrifera_M_contig116864.3485.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116864.3485.1
Unique NamemRNA_M-pyrifera_M_contig116864.3485.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116864.3485.1 vs. uniprot
Match: A0A831JWR7_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=candidate division Zixibacteria bacterium TaxID=2053527 RepID=A0A831JWR7_9BACT)

HSP 1 Score: 97.8 bits (242), Expect = 1.720e-24
Identity = 43/88 (48.86%), Postives = 63/88 (71.59%), Query Frame = 1
Query:    1 PKSFRLYQNYPNPFNPETNIKYSLKNSSNIKVEVFDIAGRIVWINEVGFKHSGEHSIKFNAENLSSGVYFYRITFDEGFDMKKMVLIK 264
            P  F L+QNYPNPFNP TNI +S+   +++++E+ +I G++V +  +G   +G H I+++A  LSSGVYFYR+T D G   KKMVL+K
Sbjct:   30 PDRFNLFQNYPNPFNPTTNISFSITQKTSVRIEIINITGQLVDVRNLGVLPAGSHDIEYDASRLSSGVYFYRMTTDNGSISKKMVLLK 117          
BLAST of mRNA_M-pyrifera_M_contig116864.3485.1 vs. uniprot
Match: A0A7C2NMP0_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=Ignavibacteria bacterium TaxID=2053306 RepID=A0A7C2NMP0_9BACT)

HSP 1 Score: 102 bits (253), Expect = 2.660e-23
Identity = 46/88 (52.27%), Postives = 63/88 (71.59%), Query Frame = 1
Query:    1 PKSFRLYQNYPNPFNPETNIKYSLKNSSNIKVEVFDIAGRIVWINEVGFKHSGEHSIKFNAENLSSGVYFYRITFDEGFDMKKMVLIK 264
            PK F + QNYPNPFNP T I Y+L  + N+K++++D  GR V +   GF+++G H+I+FN +NLSSGVYFYRI +   F   KM+LIK
Sbjct:  692 PKEFSISQNYPNPFNPSTKISYNLPEAGNVKLKIYDALGREVSLLVDGFENAGRHTIEFNGKNLSSGVYFYRIEYQNNFTTMKMILIK 779          
BLAST of mRNA_M-pyrifera_M_contig116864.3485.1 vs. uniprot
Match: A0A4Y8I7S7_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=Candidatus Marinimicrobia bacterium MT.SAG.2 TaxID=2552983 RepID=A0A4Y8I7S7_9BACT)

HSP 1 Score: 97.1 bits (240), Expect = 4.470e-23
Identity = 46/87 (52.87%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    4 KSFRLYQNYPNPFNPETNIKYSLKNSSNIKVEVFDIAGRIVWINEVGFKHSGEHSIKFNAENLSSGVYFYRITFDEGFDMKKMVLIK 264
            +SF LY NYPNPFNP T I ++L N+S + + ++DI GR V     G + +G HSI++NA NL+SGVYFYR+T DE    +KM+LIK
Sbjct:  132 RSFNLYPNYPNPFNPSTTISFTLSNASRVSLLIYDIHGREVESLIEGIQPAGSHSIEWNASNLASGVYFYRLTADEFIQTRKMILIK 218          
BLAST of mRNA_M-pyrifera_M_contig116864.3485.1 vs. uniprot
Match: A0A0W8FYV1_9ZZZZ (Aamy domain-containing protein n=1 Tax=hydrocarbon metagenome TaxID=938273 RepID=A0A0W8FYV1_9ZZZZ)

HSP 1 Score: 99.0 bits (245), Expect = 3.170e-22
Identity = 45/88 (51.14%), Postives = 63/88 (71.59%), Query Frame = 1
Query:    1 PKSFRLYQNYPNPFNPETNIKYSLKNSSNIKVEVFDIAGRIVWINEVGFKHSGEHSIKFNAENLSSGVYFYRITFDEGFDMKKMVLIK 264
            PK F + QNYPNPFNP T I +SL  + N+K+ +FD  GR V +    F+++G+H+++FN +NLSSGVYFYR+ +   F  KKM+LIK
Sbjct:  595 PKEFSISQNYPNPFNPTTKITFSLPEAGNVKLGIFDALGREVKLLVDRFENAGKHTVEFNGKNLSSGVYFYRVEYQNNFVTKKMILIK 682          
BLAST of mRNA_M-pyrifera_M_contig116864.3485.1 vs. uniprot
Match: A0A3A4R5G9_9BACT (T9SS C-terminal target domain-containing protein n=1 Tax=Ignavibacteriales bacterium TaxID=2049428 RepID=A0A3A4R5G9_9BACT)

HSP 1 Score: 98.6 bits (244), Expect = 4.380e-22
Identity = 46/88 (52.27%), Postives = 60/88 (68.18%), Query Frame = 1
Query:    1 PKSFRLYQNYPNPFNPETNIKYSLKNSSNIKVEVFDIAGRIVWINEVGFKHSGEHSIKFNAENLSSGVYFYRITFDEGFDMKKMVLIK 264
            P  F + QNYPNPFNP T I YSL  + N+K+ V+D  GR V +    F+++G H+I+FN  NLSSGVYFYR+ F   F  KKM+L+K
Sbjct:  705 PNEFSISQNYPNPFNPSTKITYSLPEAGNVKLSVYDALGREVKLLIDKFENAGRHTIEFNGRNLSSGVYFYRVEFQNNFVTKKMILLK 792          
BLAST of mRNA_M-pyrifera_M_contig116864.3485.1 vs. uniprot
Match: A0A350V4V0_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A350V4V0_9BACT)

HSP 1 Score: 98.6 bits (244), Expect = 4.420e-22
Identity = 49/88 (55.68%), Postives = 63/88 (71.59%), Query Frame = 1
Query:    1 PKSFRLYQNYPNPFNPETNIKYSLKNSSNIKVEVFDIAGRIVWINEVGFKHSGEHSIKFNAENLSSGVYFYRITFDEGFDMKKMVLIK 264
            P  F LYQNYPNPFNPETNIK+ L +S+N+K+ V+D+ GR V I   G   +G ++  +NA   SSGVYFYR+T DE   +KKM+LIK
Sbjct:  905 PDKFALYQNYPNPFNPETNIKFELPHSANVKIAVYDMLGREVDILINGKMEAGVYNASWNATPYSSGVYFYRLTTDEFVSVKKMILIK 992          
BLAST of mRNA_M-pyrifera_M_contig116864.3485.1 vs. uniprot
Match: A0A345UH86_9BACT (Endo-1,4-beta-xylanase n=1 Tax=Candidatus Cyclonatronum proteinivorum TaxID=1457365 RepID=A0A345UH86_9BACT)

HSP 1 Score: 90.5 bits (223), Expect = 9.760e-22
Identity = 42/88 (47.73%), Postives = 63/88 (71.59%), Query Frame = 1
Query:    1 PKSFRLYQNYPNPFNPETNIKYSLKNSSNIKVEVFDIAGRIVWINEVGFKHSGEHSIKFNAENLSSGVYFYRITFDEGFDMKKMVLIK 264
            P +F L+QNYPNPFNP T I+Y L  S+ + +EV+++AG+ V +   G + +G H++ FNAE+LSSG+Y YRIT     + +KM++IK
Sbjct:   19 PTAFALHQNYPNPFNPATQIRYELPESAEVSLEVYNLAGQRVAVLVNGTQTAGTHTVSFNAESLSSGLYLYRITAGSFTETRKMMMIK 106          
BLAST of mRNA_M-pyrifera_M_contig116864.3485.1 vs. uniprot
Match: A0A2D8CJH7_9BACT (Por_Secre_tail domain-containing protein n=2 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D8CJH7_9BACT)

HSP 1 Score: 97.1 bits (240), Expect = 1.470e-21
Identity = 47/88 (53.41%), Postives = 60/88 (68.18%), Query Frame = 1
Query:    1 PKSFRLYQNYPNPFNPETNIKYSLKNSSNIKVEVFDIAGRIVWINEVGFKHSGEHSIKFNAENLSSGVYFYRITFDEGFDMKKMVLIK 264
            PKSFR+YQNYPNPFNP TNI + L  S+ ++++V+DI GR V      F   G +SI FNA+ LSSG+YFYR   D+    KKM L+K
Sbjct:  517 PKSFRVYQNYPNPFNPTTNIDFELPRSAFVELDVYDITGRKVQELTSRFYQLGSYSIPFNAQGLSSGIYFYRFQIDDAIFTKKMTLVK 604          
BLAST of mRNA_M-pyrifera_M_contig116864.3485.1 vs. uniprot
Match: A0A136NHE0_9BACT (5'-nucleotidase domain-containing protein n=1 Tax=Chlorobi bacterium OLB5 TaxID=1617412 RepID=A0A136NHE0_9BACT)

HSP 1 Score: 95.1 bits (235), Expect = 1.660e-21
Identity = 45/88 (51.14%), Postives = 64/88 (72.73%), Query Frame = 1
Query:    1 PKSFRLYQNYPNPFNPETNIKYSLKNSSNIKVEVFDIAGRIVWINEVGFKHSGEHSIKFNAENLSSGVYFYRITFDEGFDMKKMVLIK 264
            P  ++L QN+PNPFNP T I +SL   + +K++VFD AG++V I   GF +SG ++  FNAENL+SGVYFY++  +E  + KKMVL+K
Sbjct:  240 PSKYKLDQNFPNPFNPSTTISFSLPEKTFVKLKVFDTAGKLVDILTEGFLNSGNYTFDFNAENLASGVYFYKLETEEFSENKKMVLLK 327          
BLAST of mRNA_M-pyrifera_M_contig116864.3485.1 vs. uniprot
Match: A0A359E2Y7_9BACT (Por_Secre_tail domain-containing protein (Fragment) n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A359E2Y7_9BACT)

HSP 1 Score: 94.7 bits (234), Expect = 1.780e-21
Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    1 PKSFRLYQNYPNPFNPETNIKYSLKNSSNIKVEVFDIAGRIVWINEVGFKHSGEHSIKFNAENLSSGVYFYRITFDEGFDMKKMVLIK 264
            PKSFR+YQNYPNPFNP TNI + L  S+ ++++V+DI GR V          G +SI FNA+ LSSG+YFYR   D+    KKM L+K
Sbjct:  221 PKSFRVYQNYPNPFNPTTNIDFELPRSAFVELDVYDITGRKVQELTSRLYQLGSYSIPFNAQGLSSGIYFYRFQIDDAIFTKKMTLVK 308          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116864.3485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A831JWR7_9BACT1.720e-2448.86T9SS type A sorting domain-containing protein n=1 ... [more]
A0A7C2NMP0_9BACT2.660e-2352.27T9SS type A sorting domain-containing protein n=1 ... [more]
A0A4Y8I7S7_9BACT4.470e-2352.87T9SS type A sorting domain-containing protein n=1 ... [more]
A0A0W8FYV1_9ZZZZ3.170e-2251.14Aamy domain-containing protein n=1 Tax=hydrocarbon... [more]
A0A3A4R5G9_9BACT4.380e-2252.27T9SS C-terminal target domain-containing protein n... [more]
A0A350V4V0_9BACT4.420e-2255.68Uncharacterized protein n=1 Tax=Bacteroidetes bact... [more]
A0A345UH86_9BACT9.760e-2247.73Endo-1,4-beta-xylanase n=1 Tax=Candidatus Cyclonat... [more]
A0A2D8CJH7_9BACT1.470e-2153.41Por_Secre_tail domain-containing protein n=2 Tax=B... [more]
A0A136NHE0_9BACT1.660e-2151.145'-nucleotidase domain-containing protein n=1 Tax=... [more]
A0A359E2Y7_9BACT1.780e-2152.27Por_Secre_tail domain-containing protein (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116864contigM-pyrifera_M_contig116864:51..317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score89.7
Seed ortholog evalue7.3e-16
Seed eggNOG ortholog1191523.MROS_0081
Preferred namexynX5
KEGG koko:K01179,ko:K01181
KEGG ReactionR06200,R11307,R11308
KEGG Pathwayko00500,ko01100,map00500,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.nucleotide catabolic process
EggNOG OGsCOG0737@1,COG0737@2,COG3291@1,COG3291@2
EC3.2.1.4,3.2.1.8
COG Functional cat.F
CAZyGH5,GH9
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size267
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815685.0994055-CDS-M-pyrifera_M_contig116864:50..3171622815685.0994055-CDS-M-pyrifera_M_contig116864:50..317Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116864 51..317 -
1692277520.97015-CDS-M-pyrifera_M_contig116864:50..3171692277520.97015-CDS-M-pyrifera_M_contig116864:50..317Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116864 51..317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116864.3485.1prot_M-pyrifera_M_contig116864.3485.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116864 51..317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116864.3485.1

>prot_M-pyrifera_M_contig116864.3485.1 ID=prot_M-pyrifera_M_contig116864.3485.1|Name=mRNA_M-pyrifera_M_contig116864.3485.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
PKSFRLYQNYPNPFNPETNIKYSLKNSSNIKVEVFDIAGRIVWINEVGFK
HSGEHSIKFNAENLSSGVYFYRITFDEGFDMKKMVLIK*
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mRNA from alignment at M-pyrifera_M_contig116864:51..317-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116864.3485.1 ID=mRNA_M-pyrifera_M_contig116864.3485.1|Name=mRNA_M-pyrifera_M_contig116864.3485.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig116864:51..317- (Macrocystis pyrifera P11B4 male)
CCGAAATCCTTCAGGTTATATCAGAATTACCCAAACCCATTTAACCCAGA AACAAACATAAAATACTCATTAAAAAACAGCTCTAATATAAAGGTAGAAG TTTTTGATATAGCAGGCCGTATAGTGTGGATTAATGAAGTTGGTTTTAAA CACTCAGGGGAGCATTCAATAAAATTTAATGCTGAAAATCTATCAAGCGG TGTTTATTTTTATAGGATTACCTTTGATGAAGGTTTTGATATGAAAAAAA TGGTATTAATTAAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116864:51..317-

>mRNA_M-pyrifera_M_contig116864.3485.1 ID=mRNA_M-pyrifera_M_contig116864.3485.1|Name=mRNA_M-pyrifera_M_contig116864.3485.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig116864:51..317- (Macrocystis pyrifera P11B4 male)
CCGAAATCCTTCAGGTTATATCAGAATTACCCAAACCCATTTAACCCAGA
AACAAACATAAAATACTCATTAAAAAACAGCTCTAATATAAAGGTAGAAG
TTTTTGATATAGCAGGCCGTATAGTGTGGATTAATGAAGTTGGTTTTAAA
CACTCAGGGGAGCATTCAATAAAATTTAATGCTGAAAATCTATCAAGCGG
TGTTTATTTTTATAGGATTACCTTTGATGAAGGTTTTGATATGAAAAAAA
TGGTATTAATTAAGTAACCGAAATCCTTCAGGTTATATCAGAATTACCCA
AACCCATTTAACCCAGAAACAAACATAAAATACTCATTAAAAAACAGCTC
TAATATAAAGGTAGAAGTTTTTGATATAGCAGGCCGTATAGTGTGGATTA
ATGAAGTTGGTTTTAAACACTCAGGGGAGCATTCAATAAAATTTAATGCT
GAAAATCTATCAAGCGGTGTTTATTTTTATAGGATTACCTTTGATGAAGG
TTTTGATATGAAAAAAATGGTATTAATTAAGTAA
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