mRNA_M-pyrifera_M_contig116790.3477.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116790.3477.1
Unique NamemRNA_M-pyrifera_M_contig116790.3477.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116790.3477.1 vs. uniprot
Match: A0A5A8CIF7_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CIF7_CAFRO)

HSP 1 Score: 89.7 bits (221), Expect = 3.190e-19
Identity = 44/83 (53.01%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    4 LYKLFLSWHLPVGLVLLVVLGIVWPVPGAWLSASTPLSTVCVVLIFLLSGLKLRTAELAKAVGSPWAVLYGLVMILGLSPCLG 252
            LYK ++ WHLP+GLV++VV G + PVPG WL  +T LST CVV+IF  SG+KL+T E+  A+     V+ GLV+ILG++P +G
Sbjct:   55 LYKFWMKWHLPIGLVVMVVFGFLVPVPGEWLGDNTELSTACVVIIFFFSGMKLKTDEVWTALRDWVGVITGLVLILGVTPLIG 137          
BLAST of mRNA_M-pyrifera_M_contig116790.3477.1 vs. uniprot
Match: A0A7S1C1F2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C1F2_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 7.080e-16
Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = 1
Query:   19 LSWHLPVGLVLLVVLGIVWPVPGAWLSASTPLSTVCVVLIFLLSGLKLRTAELAKAVGSPWAVLYGLVMILGLSPCLG 252
            L WHL   +V  +  G ++P PG W+  +TPL+T+ VV+IF++SG  LRT EL  A+GS  AV  G V IL ++PCLG
Sbjct:   39 LKWHLVFMMVFAIAFGFLFPEPGKWVGENTPLTTIAVVVIFVISGFLLRTKELRDAMGSLGAVALGAVAILAVTPCLG 116          
BLAST of mRNA_M-pyrifera_M_contig116790.3477.1 vs. uniprot
Match: B3RVK8_TRIAD (Uncharacterized protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3RVK8_TRIAD)

HSP 1 Score: 71.2 bits (173), Expect = 1.120e-12
Identity = 39/84 (46.43%), Postives = 60/84 (71.43%), Query Frame = 1
Query:    1 RLYKLFLSWHLPVGLVLLVVLGIVWPVPGAWLSASTPLSTVCVVLIFLLSGLKLRTAELAKAVGSPWAVLYGLVMILGLSPCLG 252
            R+  +  ++HLP+GL++L++ GI+ P PGA+LS  TPL  +C+V IFL SGLKL+T +L KA+ S  A L+GL+ I  ++  +G
Sbjct:   48 RISSILFAYHLPIGLIVLLIFGILVPQPGAYLS-QTPLQYICIVYIFLNSGLKLKTDDLLKALKSFRASLWGLLSIFLVTSVIG 130          
BLAST of mRNA_M-pyrifera_M_contig116790.3477.1 vs. uniprot
Match: C1E9H5_MICCC (Bile Acid:Na+ symporter family n=2 Tax=Micromonas TaxID=38832 RepID=C1E9H5_MICCC)

HSP 1 Score: 63.5 bits (153), Expect = 6.930e-10
Identity = 34/80 (42.50%), Postives = 55/80 (68.75%), Query Frame = 1
Query:   28 HLPVGLVLLVVLGIVWPVPGAWL----SASTPLS-TVCVVLIFLLSGLKLRTAELAKAVGSPWAVLYGLVMILGLSPCLG 252
            +L +G V ++VL + WP+PG  L    S   P++ T C+V+IF +SGL L+TA++ KA+G P A+ YG++ IL ++P +G
Sbjct:   27 YLVLGFVFVIVLALSWPLPGRELGSPKSGDFPIAQTCCIVVIFFISGLTLKTADIKKALGQPAALAYGIITILLVTPMMG 106          
BLAST of mRNA_M-pyrifera_M_contig116790.3477.1 vs. uniprot
Match: A0A8J9S8R4_9CHLO (Probable sodium/metabolite cotransporter BASS4, chloroplas n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S8R4_9CHLO)

HSP 1 Score: 63.5 bits (153), Expect = 7.140e-10
Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = 1
Query:   31 LPVGLVLLVVLGIVWPVPGA----W-LSASTPLSTVCVVLIFLLSGLKLRTAELAKAVGSPWAVLYGLVMILGLSPCLG 252
            LP+G ++ +V  + WP PG     W +     + TVC+V+IFL+SGL L+T E+  A+  P  ++YGLV ILG++PCLG
Sbjct:   57 LPLGFLVCIVWMLAWPWPGEKVEQWKVKNYGVVETVCIVIIFLISGLALKTEEILFAIKHPGPLIYGLVAILGVTPCLG 135          
BLAST of mRNA_M-pyrifera_M_contig116790.3477.1 vs. uniprot
Match: I0YXV2_COCSC (BASS family transporter: sodium ion/bile acid (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YXV2_COCSC)

HSP 1 Score: 62.0 bits (149), Expect = 2.210e-9
Identity = 33/78 (42.31%), Postives = 51/78 (65.38%), Query Frame = 1
Query:   31 LPVGLVLLVVLGIVWPVPGA----WLSAS-TPLSTVCVVLIFLLSGLKLRTAELAKAVGSPWAVLYGLVMILGLSPCL 249
            LP+G ++ +V  + WP PG     W  A+   + T C+V+IF++SGL L+T E+  A+  P  ++YGLV ILG++PCL
Sbjct:    7 LPIGFLICIVWMLAWPWPGEKVEQWKVANYVVVETACIVVIFVISGLALKTEEITYAIKHPAPLIYGLVAILGVTPCL 84          
BLAST of mRNA_M-pyrifera_M_contig116790.3477.1 vs. uniprot
Match: UPI00139063E6 (probable sodium/metabolite cotransporter BASS4, chloroplastic n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00139063E6)

HSP 1 Score: 60.8 bits (146), Expect = 6.280e-9
Identity = 37/84 (44.05%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    1 RLYKLFLSWHLPVGLVLLVVLGIVWPVPGAWLSASTPLSTVCVVLIFLLSGLKLRTAELAKAVGSPWAVLYGLVMILGLSPCLG 252
            R+ +L L   LP+GLV LV  GI+ P PG +LS   P   +C+V IFL SGLKLRT E+   + +  A++Y +++I+ L+P +G
Sbjct:   30 RIRQLALKNFLPLGLVFLVGFGILLPAPGVFLS-EFPTHYICIVGIFLHSGLKLRTGEIRDTIRAYKALIYQILVIMLLTPIIG 112          
BLAST of mRNA_M-pyrifera_M_contig116790.3477.1 vs. uniprot
Match: A7RYT1_NEMVE (Predicted protein (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RYT1_NEMVE)

HSP 1 Score: 60.8 bits (146), Expect = 6.470e-9
Identity = 37/84 (44.05%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    1 RLYKLFLSWHLPVGLVLLVVLGIVWPVPGAWLSASTPLSTVCVVLIFLLSGLKLRTAELAKAVGSPWAVLYGLVMILGLSPCLG 252
            R+ +L L   LP+GLV LV  GI+ P PG +LS   P   +C+V IFL SGLKLRT E+   + +  A++Y +++I+ L+P +G
Sbjct:   30 RIRQLALKNFLPLGLVFLVGFGILLPAPGVFLS-EFPTHYICIVGIFLHSGLKLRTGEIRDTIRAYKALIYQILVIMLLTPIIG 112          
BLAST of mRNA_M-pyrifera_M_contig116790.3477.1 vs. uniprot
Match: A0A7S0SJ85_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SJ85_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 1.590e-8
Identity = 32/79 (40.51%), Postives = 52/79 (65.82%), Query Frame = 1
Query:   31 LPVGLVLLVVLGIVWPVPGAWL----SASTPLS-TVCVVLIFLLSGLKLRTAELAKAVGSPWAVLYGLVMILGLSPCLG 252
            L +G   ++ LG+ WP+PGA L    +   P++ T C+V IF +SGL L+TA++  A+     ++YG++MILG++P LG
Sbjct:   14 LVLGFAAVITLGLSWPLPGAELGDPMAGDFPIAQTCCIVTIFFISGLTLKTADIKNALNEHVGLVYGIIMILGVTPMLG 92          
BLAST of mRNA_M-pyrifera_M_contig116790.3477.1 vs. uniprot
Match: A0A3M6U8Z2_POCDA (Uncharacterized protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6U8Z2_POCDA)

HSP 1 Score: 58.9 bits (141), Expect = 2.990e-8
Identity = 35/74 (47.30%), Postives = 52/74 (70.27%), Query Frame = 1
Query:   31 LPVGLVLLVVLGIVWPVPGAWLSASTPLSTVCVVLIFLLSGLKLRTAELAKAVGSPWAVLYGLVMILGLSPCLG 252
            LP+ LV+ V+LGI+ P PG + S   P + VCV+ IFL SGLKL+T E+  A+ S  A+++G+V IL ++P +G
Sbjct:   44 LPISLVVFVILGILVPQPGVFFS-KLPTNYVCVIGIFLHSGLKLKTEEVKDALKSFKAMIWGVVCILFITPVIG 116          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116790.3477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CIF7_CAFRO3.190e-1953.01Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A0A7S1C1F2_9STRA7.080e-1648.72Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
B3RVK8_TRIAD1.120e-1246.43Uncharacterized protein n=2 Tax=Trichoplax TaxID=1... [more]
C1E9H5_MICCC6.930e-1042.50Bile Acid:Na+ symporter family n=2 Tax=Micromonas ... [more]
A0A8J9S8R4_9CHLO7.140e-1044.30Probable sodium/metabolite cotransporter BASS4, ch... [more]
I0YXV2_COCSC2.210e-942.31BASS family transporter: sodium ion/bile acid (Fra... [more]
UPI00139063E66.280e-944.05probable sodium/metabolite cotransporter BASS4, ch... [more]
A7RYT1_NEMVE6.470e-944.05Predicted protein (Fragment) n=1 Tax=Nematostella ... [more]
A0A7S0SJ85_9CHLO1.590e-840.51Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A3M6U8Z2_POCDA2.990e-847.30Uncharacterized protein n=1 Tax=Pocillopora damico... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116790contigM-pyrifera_M_contig116790:83..334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score71.2
Seed ortholog evalue2.5e-10
Seed eggNOG ortholog10228.TriadP55688
KEGG koko:K14347
KEGG TC2.A.93.1
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.SBF-like CPA transporter family (DUF4137)
EggNOG OGs39J05@33154,3CNTD@33208,COG0385@1,KOG4821@2759
COG Functional cat.S
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko04147
Exons1
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815684.570043-CDS-M-pyrifera_M_contig116790:82..3341622815684.570043-CDS-M-pyrifera_M_contig116790:82..334Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116790 83..334 -
1692277520.7094672-CDS-M-pyrifera_M_contig116790:82..3341692277520.7094672-CDS-M-pyrifera_M_contig116790:82..334Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116790 83..334 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116790.3477.1prot_M-pyrifera_M_contig116790.3477.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116790 83..334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116790.3477.1

>prot_M-pyrifera_M_contig116790.3477.1 ID=prot_M-pyrifera_M_contig116790.3477.1|Name=mRNA_M-pyrifera_M_contig116790.3477.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
RLYKLFLSWHLPVGLVLLVVLGIVWPVPGAWLSASTPLSTVCVVLIFLLS
GLKLRTAELAKAVGSPWAVLYGLVMILGLSPCLG
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mRNA from alignment at M-pyrifera_M_contig116790:83..334-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116790.3477.1 ID=mRNA_M-pyrifera_M_contig116790.3477.1|Name=mRNA_M-pyrifera_M_contig116790.3477.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig116790:83..334- (Macrocystis pyrifera P11B4 male)
CGGTTGTACAAATTGTTCCTGTCGTGGCACCTCCCTGTGGGATTGGTGTT GCTGGTGGTGCTGGGGATTGTGTGGCCCGTGCCGGGGGCGTGGTTGTCCG CGTCTACTCCGCTGAGCACGGTGTGTGTGGTTTTGATTTTCCTGTTGAGC GGGCTCAAGCTGCGCACGGCGGAGCTGGCCAAGGCCGTGGGTTCTCCGTG GGCGGTGTTGTACGGCCTGGTGATGATTCTGGGCCTGTCTCCGTGCCTGG GC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116790:83..334-

>mRNA_M-pyrifera_M_contig116790.3477.1 ID=mRNA_M-pyrifera_M_contig116790.3477.1|Name=mRNA_M-pyrifera_M_contig116790.3477.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig116790:83..334- (Macrocystis pyrifera P11B4 male)
CGGTTGTACAAATTGTTCCTGTCGTGGCACCTCCCTGTGGGATTGGTGTT
GCTGGTGGTGCTGGGGATTGTGTGGCCCGTGCCGGGGGCGTGGTTGTCCG
CGTCTACTCCGCTGAGCACGGTGTGTGTGGTTTTGATTTTCCTGTTGAGC
GGGCTCAAGCTGCGCACGGCGGAGCTGGCCAAGGCCGTGGGTTCTCCGTG
GGCGGTGTTGTACGGCCTGGTGATGATTCTGGGCCTGTCTCCGTGCCTGG
GCCGGTTGTACAAATTGTTCCTGTCGTGGCACCTCCCTGTGGGATTGGTG
TTGCTGGTGGTGCTGGGGATTGTGTGGCCCGTGCCGGGGGCGTGGTTGTC
CGCGTCTACTCCGCTGAGCACGGTGTGTGTGGTTTTGATTTTCCTGTTGA
GCGGGCTCAAGCTGCGCACGGCGGAGCTGGCCAAGGCCGTGGGTTCTCCG
TGGGCGGTGTTGTACGGCCTGGTGATGATTCTGGGCCTGTCTCCGTGCCT
GGGC
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