mRNA_M-pyrifera_M_contig116773.3475.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116773.3475.1
Unique NamemRNA_M-pyrifera_M_contig116773.3475.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116773.3475.1 vs. uniprot
Match: A0A6B1B3P9_9ACTN (Lysophospholipase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1B3P9_9ACTN)

HSP 1 Score: 137 bits (345), Expect = 2.360e-38
Identity = 64/84 (76.19%), Postives = 70/84 (83.33%), Query Frame = 1
Query:    1 VTSTLDHGTTRDGLVQARRRWQPTGDARAAVLLLHGIAEHGGRYEHVGRALADAGFDVVAIDHRGFGQSGGRRGHVDHWSQYSD 252
            + ST+DHGTTRDGL+Q RRRWQP G ARAAVLLLHGIAEH GRY HVG   A AGFD VAIDHRG+G+SGG RGH D WSQ+SD
Sbjct:    1 MRSTVDHGTTRDGLIQMRRRWQPAGPARAAVLLLHGIAEHSGRYGHVGDRFAAAGFDTVAIDHRGYGRSGGHRGHCDSWSQFSD 84          
BLAST of mRNA_M-pyrifera_M_contig116773.3475.1 vs. uniprot
Match: A0A3M2HBZ7_ACTSX (Alpha/beta hydrolase n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2HBZ7_ACTSX)

HSP 1 Score: 126 bits (316), Expect = 6.650e-34
Identity = 59/84 (70.24%), Postives = 68/84 (80.95%), Query Frame = 1
Query:    1 VTSTLDHGTTRDGLVQARRRWQPTGDARAAVLLLHGIAEHGGRYEHVGRALADAGFDVVAIDHRGFGQSGGRRGHVDHWSQYSD 252
            +T  +D+G TRDGL+Q RRRW+P   ARAAVL+LHGIAEH GRYEHVG  LA  GFDVVAID RG+G+SGGRRGHVD W Q+ D
Sbjct:   10 ITPEIDYGVTRDGLLQLRRRWRPATPARAAVLVLHGIAEHSGRYEHVGGRLAAHGFDVVAIDQRGYGRSGGRRGHVDSWDQFLD 93          
BLAST of mRNA_M-pyrifera_M_contig116773.3475.1 vs. uniprot
Match: A0A2D6U954_9ACTN (Hydrolase_4 domain-containing protein n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6U954_9ACTN)

HSP 1 Score: 117 bits (293), Expect = 1.510e-30
Identity = 52/84 (61.90%), Postives = 67/84 (79.76%), Query Frame = 1
Query:    1 VTSTLDHGTTRDGLVQARRRWQPTGDARAAVLLLHGIAEHGGRYEHVGRALADAGFDVVAIDHRGFGQSGGRRGHVDHWSQYSD 252
            +T+ +DHGTTRDGL Q RRRW P GDA+AA+L++HG+ EH GRYEHVG   A+ G+DVV +D+RGFG SGG R +VD +SQ+ D
Sbjct:    1 MTAVVDHGTTRDGLXQLRRRWXPAGDAKAAMLMVHGLGEHSGRYEHVGAHFAERGYDVVMLDNRGFGASGGPRAYVDSFSQFHD 84          
BLAST of mRNA_M-pyrifera_M_contig116773.3475.1 vs. uniprot
Match: A0A538DKX6_9ACTN (Lysophospholipase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538DKX6_9ACTN)

HSP 1 Score: 109 bits (273), Expect = 2.620e-27
Identity = 55/80 (68.75%), Postives = 63/80 (78.75%), Query Frame = 1
Query:   13 LDHGTTRDGLVQARRRWQPTGDARAAVLLLHGIAEHGGRYEHVGRALADAGFDVVAIDHRGFGQSGGRRGHVDHWSQYSD 252
            +D G TRDGLVQ RR W P    RAAVLLLHGIAEH GRYEHVGR L++ GFDVVAID RGFG+SGGRR +VD + ++ D
Sbjct:   37 VDFGLTRDGLVQLRRYW-PAASPRAAVLLLHGIAEHSGRYEHVGRFLSERGFDVVAIDLRGFGESGGRRAYVDSFDEFFD 115          
BLAST of mRNA_M-pyrifera_M_contig116773.3475.1 vs. uniprot
Match: A0A6I2YAS5_9ACTN (Alpha/beta fold hydrolase n=2 Tax=root TaxID=1 RepID=A0A6I2YAS5_9ACTN)

HSP 1 Score: 103 bits (257), Expect = 3.350e-25
Identity = 53/84 (63.10%), Postives = 63/84 (75.00%), Query Frame = 1
Query:    1 VTSTLDHGTTRDGLVQARRRWQPTGDARAAVLLLHGIAEHGGRYEHVGRALADAGFDVVAIDHRGFGQSGGRRGHVDHWSQYSD 252
            +TST D G TRDG+VQ RRRW+      AA+LLLHGIAEH GRYEHVG  LA AG +V+AIDHRGFG SGGRR +V  + ++ D
Sbjct:    2 MTSTTDFGLTRDGVVQLRRRWKAQSPW-AAMLLLHGIAEHSGRYEHVGEHLAAAGVEVIAIDHRGFGLSGGRRSYVASFDEFLD 84          
BLAST of mRNA_M-pyrifera_M_contig116773.3475.1 vs. uniprot
Match: A0A7Y1ZV93_9ACTN (Alpha/beta hydrolase n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A7Y1ZV93_9ACTN)

HSP 1 Score: 101 bits (251), Expect = 2.790e-24
Identity = 50/82 (60.98%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    7 STLDHGTTRDGLVQARRRWQPTGDARAAVLLLHGIAEHGGRYEHVGRALADAGFDVVAIDHRGFGQSGGRRGHVDHWSQYSD 252
            ST D GTTRDGL Q RR W    D RAA+LL+HGI EH GRYEHVG A A++G D +A D RGFG++ GR GHVD + +Y D
Sbjct:    6 STTDFGTTRDGLRQLRRHWA-ADDPRAALLLVHGIGEHSGRYEHVGEAFAESGIDTLAADGRGFGRTAGRPGHVDSFDEYVD 86          
BLAST of mRNA_M-pyrifera_M_contig116773.3475.1 vs. uniprot
Match: UPI00034A325E (alpha/beta hydrolase n=1 Tax=Ilumatobacter nonamiensis TaxID=467093 RepID=UPI00034A325E)

HSP 1 Score: 100 bits (249), Expect = 4.940e-24
Identity = 48/82 (58.54%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    1 VTSTLDHGTTRDGLVQARRRWQPTGDARAAVLLLHGIAEHGGRYEHVGRALADAGFDVVAIDHRGFGQSGGRRGHVDHWSQY 246
            + ST D GTT DGL Q RRRW P    RAA+LL+HGI EH GRYEHVG A A+AG DV++ D RGFG++ GRR HV+ + ++
Sbjct:    2 IASTTDIGTTHDGLEQLRRRWTPESP-RAAMLLVHGIGEHSGRYEHVGAAFAEAGVDVLSFDQRGFGETAGRRAHVETFDEF 82          
BLAST of mRNA_M-pyrifera_M_contig116773.3475.1 vs. uniprot
Match: A0A520Y1E9_9ACTN (Alpha/beta hydrolase n=2 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520Y1E9_9ACTN)

HSP 1 Score: 99.0 bits (245), Expect = 4.730e-23
Identity = 47/82 (57.32%), Postives = 57/82 (69.51%), Query Frame = 1
Query:    7 STLDHGTTRDGLVQARRRWQPTGDARAAVLLLHGIAEHGGRYEHVGRALADAGFDVVAIDHRGFGQSGGRRGHVDHWSQYSD 252
            ST     TR G+ Q  R W+P G ARA++L+LHGIAEH GRYEHVG A ADAG+   + DH GFG+SGG+RGHV  +  Y D
Sbjct:   54 STERKAATRSGVEQWVREWEPQGSARASILILHGIAEHSGRYEHVGSAFADAGYFARSYDHHGFGKSGGKRGHVPSFDHYLD 135          
BLAST of mRNA_M-pyrifera_M_contig116773.3475.1 vs. uniprot
Match: A0A7X6AUF3_9ACTN (Alpha/beta fold hydrolase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6AUF3_9ACTN)

HSP 1 Score: 94.4 bits (233), Expect = 6.540e-22
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 1
Query:   91 VLLLHGIAEHGGRYEHVGRALADAGFDVVAIDHRGFGQSGGRRGHVDHWSQYSD 252
            +L+LHGIAEH GRYEHVGR LA AGFD VAIDHRG+G+SGGRRGHVD W ++SD
Sbjct:    1 MLILHGIAEHSGRYEHVGRRLAAAGFDTVAIDHRGYGRSGGRRGHVDSWDRFSD 54          
BLAST of mRNA_M-pyrifera_M_contig116773.3475.1 vs. uniprot
Match: A0A535JNY1_9CHLR (Lysophospholipase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535JNY1_9CHLR)

HSP 1 Score: 91.3 bits (225), Expect = 2.950e-20
Identity = 44/73 (60.27%), Postives = 50/73 (68.49%), Query Frame = 1
Query:   28 TRDGLVQARRRWQPTGDARAAVLLLHGIAEHGGRYEHVGRALADAGFDVVAIDHRGFGQSGGRRGHVDHWSQY 246
            TRDGL     RW   G ARA VLL+HG+AEH GRY HVG  LA AG +  A D RGFG+SGG R ++D WSQY
Sbjct:   35 TRDGLDLRTYRWPAIGAARARVLLVHGVAEHAGRYPHVGSQLARAGIETYAFDLRGFGRSGGHRAYIDQWSQY 107          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116773.3475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B1B3P9_9ACTN2.360e-3876.19Lysophospholipase n=1 Tax=Acidimicrobiaceae bacter... [more]
A0A3M2HBZ7_ACTSX6.650e-3470.24Alpha/beta hydrolase n=1 Tax=Actinomyces sp. TaxID... [more]
A0A2D6U954_9ACTN1.510e-3061.90Hydrolase_4 domain-containing protein n=6 Tax=Acid... [more]
A0A538DKX6_9ACTN2.620e-2768.75Lysophospholipase n=1 Tax=Actinomycetia bacterium ... [more]
A0A6I2YAS5_9ACTN3.350e-2563.10Alpha/beta fold hydrolase n=2 Tax=root TaxID=1 Rep... [more]
A0A7Y1ZV93_9ACTN2.790e-2460.98Alpha/beta hydrolase n=1 Tax=Ilumatobacter sp. Tax... [more]
UPI00034A325E4.940e-2458.54alpha/beta hydrolase n=1 Tax=Ilumatobacter nonamie... [more]
A0A520Y1E9_9ACTN4.730e-2357.32Alpha/beta hydrolase n=2 Tax=Acidimicrobiales bact... [more]
A0A7X6AUF3_9ACTN6.540e-2277.78Alpha/beta fold hydrolase n=1 Tax=Actinomycetia ba... [more]
A0A535JNY1_9CHLR2.950e-2060.27Lysophospholipase n=1 Tax=Chloroflexi bacterium Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116773contigM-pyrifera_M_contig116773:308..559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score87.0
Seed ortholog evalue4.4e-15
Seed eggNOG ortholog1313172.YM304_33770
Preferred nameytpA
KEGG koko:K01048
KEGG Pathwayko00564,map00564
Hectar predicted targeting categoryother localisation
GOsGO:0001906,GO:0001907,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006629,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0010941,GO:0010942,GO:0016020,GO:0016042,GO:0016298,GO:0016787,GO:0016788,GO:0030312,GO:0031341,GO:0031343,GO:0031640,GO:0035821,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043900,GO:0043902,GO:0043903,GO:0044003,GO:0044004,GO:0044068,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044364,GO:0044403,GO:0044419,GO:0044464,GO:0044531,GO:0044532,GO:0044533,GO:0046486,GO:0046503,GO:0047372,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051701,GO:0051704,GO:0051709,GO:0051712,GO:0051817,GO:0051818,GO:0051883,GO:0052040,GO:0052042,GO:0052150,GO:0052151,GO:0052248,GO:0052330,GO:0052433,GO:0052501,GO:0052689,GO:0065007,GO:0071704,GO:0071944,GO:1901575
EggNOG free text desc.hydrolase
EggNOG OGs2GPA8@201174,COG2267@1,COG2267@2
EC3.1.1.5
COG Functional cat.I
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815684.5071354-CDS-M-pyrifera_M_contig116773:307..5591622815684.5071354-CDS-M-pyrifera_M_contig116773:307..559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116773 308..559 +
1692277520.6713276-CDS-M-pyrifera_M_contig116773:307..5591692277520.6713276-CDS-M-pyrifera_M_contig116773:307..559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116773 308..559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116773.3475.1prot_M-pyrifera_M_contig116773.3475.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116773 308..559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116773.3475.1

>prot_M-pyrifera_M_contig116773.3475.1 ID=prot_M-pyrifera_M_contig116773.3475.1|Name=mRNA_M-pyrifera_M_contig116773.3475.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
VTSTLDHGTTRDGLVQARRRWQPTGDARAAVLLLHGIAEHGGRYEHVGRA
LADAGFDVVAIDHRGFGQSGGRRGHVDHWSQYSD
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mRNA from alignment at M-pyrifera_M_contig116773:308..559+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116773.3475.1 ID=mRNA_M-pyrifera_M_contig116773.3475.1|Name=mRNA_M-pyrifera_M_contig116773.3475.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig116773:308..559+ (Macrocystis pyrifera P11B4 male)
GTCACCTCCACGCTCGATCACGGCACGACCCGCGACGGACTCGTCCAGGC CCGCCGCCGTTGGCAGCCGACGGGCGACGCCCGCGCCGCCGTGTTGCTGC TGCACGGAATCGCCGAGCACGGCGGACGCTACGAACATGTCGGACGGGCG CTCGCCGATGCCGGGTTCGACGTCGTGGCCATCGACCATCGCGGCTTCGG GCAGAGCGGTGGGCGCCGAGGCCATGTCGATCACTGGTCGCAGTATTCCG AC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116773:308..559+

>mRNA_M-pyrifera_M_contig116773.3475.1 ID=mRNA_M-pyrifera_M_contig116773.3475.1|Name=mRNA_M-pyrifera_M_contig116773.3475.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig116773:308..559+ (Macrocystis pyrifera P11B4 male)
GTCACCTCCACGCTCGATCACGGCACGACCCGCGACGGACTCGTCCAGGC
CCGCCGCCGTTGGCAGCCGACGGGCGACGCCCGCGCCGCCGTGTTGCTGC
TGCACGGAATCGCCGAGCACGGCGGACGCTACGAACATGTCGGACGGGCG
CTCGCCGATGCCGGGTTCGACGTCGTGGCCATCGACCATCGCGGCTTCGG
GCAGAGCGGTGGGCGCCGAGGCCATGTCGATCACTGGTCGCAGTATTCCG
ACGTCACCTCCACGCTCGATCACGGCACGACCCGCGACGGACTCGTCCAG
GCCCGCCGCCGTTGGCAGCCGACGGGCGACGCCCGCGCCGCCGTGTTGCT
GCTGCACGGAATCGCCGAGCACGGCGGACGCTACGAACATGTCGGACGGG
CGCTCGCCGATGCCGGGTTCGACGTCGTGGCCATCGACCATCGCGGCTTC
GGGCAGAGCGGTGGGCGCCGAGGCCATGTCGATCACTGGTCGCAGTATTC
CGAC
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