mRNA_M-pyrifera_M_contig116773.3474.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116773.3474.1
Unique NamemRNA_M-pyrifera_M_contig116773.3474.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig116773.3474.1 vs. uniprot
Match: A0A2D8LSE5_9ACTN (Hydrolase n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8LSE5_9ACTN)

HSP 1 Score: 164 bits (415), Expect = 3.130e-49
Identity = 72/87 (82.76%), Postives = 77/87 (88.51%), Query Frame = 1 
Query:    1 ILDGQRRGFTRIPLVSLVFHCRMTGGELNPHPLECSDVGWFSEGALPEPTGGADLWATQAFAAIRGEDVPVQFDQPRTPPWRGDVDH 261
            +LDGQRRGFTRIPLVSLVFHCR TGGEL PHPLEC+DVGWF+E ALP+PT GADLWA  AFAAIRGEDVPV FD PRTPPW+G  DH
Sbjct:  142 VLDGQRRGFTRIPLVSLVFHCRATGGELTPHPLECTDVGWFAEDALPDPTAGADLWAAHAFAAIRGEDVPVLFDLPRTPPWKGAPDH 228
[Close]
BLAST of mRNA_M-pyrifera_M_contig116773.3474.1 vs. uniprot
Match: A0A7X6AUR2_9ACTN (Hydrolase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6AUR2_9ACTN)

HSP 1 Score: 144 bits (363), Expect = 2.940e-43
Identity = 63/85 (74.12%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:    7 DGQRRGFTRIPLVSLVFHCRMTGGELNPHPLECSDVGWFSEGALPEPTGGADLWATQAFAAIRGEDVPVQFDQPRTPPWRGDVDH 261
            DGQRRGFTRIPLVSLVFHCR  GGEL PHPLEC D G+F+E  LPEP    D+WA  AF AIRGEDV V+FD PR+PPWRGD DH
Sbjct:    1 DGQRRGFTRIPLVSLVFHCRAVGGELRPHPLECDDAGFFAEDELPEPIANPDVWAEHAFRAIRGEDVEVRFDAPRSPPWRGDPDH 85
[Close]
BLAST of mRNA_M-pyrifera_M_contig116773.3474.1 vs. uniprot
Match: A0A6B1B1M2_9ACTN (NUDIX domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1B1M2_9ACTN)

HSP 1 Score: 136 bits (342), Expect = 2.990e-38
Identity = 62/84 (73.81%), Postives = 66/84 (78.57%), Query Frame = 1 
Query:    1 ILDGQRRGFTRIPLVSLVFHCRMTGGELNPHPLECSDVGWFSEGALPEPTGGADLWATQAFAAIRGEDVPVQFDQPRTPPWRGD 252
            ILDGQRR FTRIPLV+LVFHCR  GGEL  HPLEC DVG+F+  ALPE T   D WA  AFAAIRGED+ VQFD PR PPWRGD
Sbjct:  142 ILDGQRRAFTRIPLVALVFHCRAIGGELRAHPLECLDVGFFARDALPEATVNPDWWADHAFAAIRGEDIKVQFDAPRNPPWRGD 225
[Close]
BLAST of mRNA_M-pyrifera_M_contig116773.3474.1 vs. uniprot
Match: A0A3M2HFN3_ACTSX (NUDIX domain-containing protein n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2HFN3_ACTSX)

HSP 1 Score: 136 bits (343), Expect = 1.370e-37
Identity = 60/85 (70.59%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:    1 ILDGQRRGFTRIPLVSLVFHCRMTGGELNPHPLECSDVGWFSEGALPEPTGGADLWATQAFAAIRGEDVPVQFDQPRTPPWRGDV 255
            +LDG RR FTRIPL S+VFHCR TGG L PHPLEC D G+F E  LPEP  GAD WA  AF AIRGEDVPV FD PR PPWRG+ 
Sbjct:  202 VLDGLRRRFTRIPLYSIVFHCRRTGGTLRPHPLECLDAGFFPEDGLPEPVAGADQWADHAFRAIRGEDVPVMFDPPRQPPWRGET 286
[Close]
BLAST of mRNA_M-pyrifera_M_contig116773.3474.1 vs. uniprot
Match: A0A6G0A8X4_9ACTN (NUDIX domain-containing protein n=2 Tax=Bacteria TaxID=2 RepID=A0A6G0A8X4_9ACTN)

HSP 1 Score: 134 bits (337), Expect = 1.610e-37
Identity = 58/86 (67.44%), Postives = 66/86 (76.74%), Query Frame = 1 
Query:    1 ILDGQRRGFTRIPLVSLVFHCRMTGGELNPHPLECSDVGWFSEGALPEPTGGADLWATQAFAAIRGEDVPVQFDQPRTPPWRGDVD 258
            + DG R GFTRIPL SL+FHCR  GGEL  HPLECSDVGWFS+GALPEP  GA+ W   AFAAIRG+ V V +D PR PPW+G+ D
Sbjct:  140 VFDGLRLGFTRIPLYSLIFHCRAVGGELVRHPLECSDVGWFSQGALPEPIAGAEHWGAHAFAAIRGDPVEVMYDPPRKPPWKGNQD 225
[Close]
BLAST of mRNA_M-pyrifera_M_contig116773.3474.1 vs. uniprot
Match: A0A6B1EFA0_9ACTN (NUDIX domain-containing protein n=8 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1EFA0_9ACTN)

HSP 1 Score: 130 bits (328), Expect = 5.420e-36
Identity = 58/83 (69.88%), Postives = 65/83 (78.31%), Query Frame = 1 
Query:    1 ILDGQRRGFTRIPLVSLVFHCRMTGGELNPHPLECSDVGWFSEGALPEPTGGADLWATQAFAAIRGEDVPVQFDQPRTPPWRG 249
            ILDG R GF R+PLVS+VFHCR  GGEL PHPLECSDVG+F+EG LPE T   +LWA  AF+AIRGE V V FD PR PPW+G
Sbjct:  152 ILDGMRLGFHRVPLVSIVFHCRSLGGELEPHPLECSDVGFFAEGELPERTARPELWAPHAFSAIRGESVEVLFDHPRDPPWQG 234
[Close]
BLAST of mRNA_M-pyrifera_M_contig116773.3474.1 vs. uniprot
Match: A0A7W0LPR4_9ACTN (NUDIX hydrolase N-terminal domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0LPR4_9ACTN)

HSP 1 Score: 130 bits (326), Expect = 5.950e-36
Identity = 57/83 (68.67%), Postives = 65/83 (78.31%), Query Frame = 1 
Query:    1 ILDGQRRGFTRIPLVSLVFHCRMTGGELNPHPLECSDVGWFSEGALPEPTGGADLWATQAFAAIRGEDVPVQFDQPRTPPWRG 249
            +LDG R GFT IPL SLVFHCR TGGEL  HPLEC +VGWF++ ALP+   GAD WA  AFAAIRG+DV V +D+PRTPPW G
Sbjct:  135 VLDGLRLGFTHIPLYSLVFHCRATGGELQAHPLECQEVGWFAQDALPDFIAGADHWAEHAFAAIRGQDVGVLYDRPRTPPWSG 217
[Close]
BLAST of mRNA_M-pyrifera_M_contig116773.3474.1 vs. uniprot
Match: A0A538LYP7_9ACTN (NUDIX domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538LYP7_9ACTN)

HSP 1 Score: 130 bits (326), Expect = 7.160e-36
Identity = 56/83 (67.47%), Postives = 64/83 (77.11%), Query Frame = 1 
Query:    1 ILDGQRRGFTRIPLVSLVFHCRMTGGELNPHPLECSDVGWFSEGALPEPTGGADLWATQAFAAIRGEDVPVQFDQPRTPPWRG 249
            +LDG R GFTR+PL SL+F CR+ GGEL PHPLEC+DVGWFSE  LP+P  GA  W++  FAAIRGE V V FDQPR P WRG
Sbjct:  141 VLDGLRLGFTRVPLYSLIFLCRVLGGELRPHPLECADVGWFSEDRLPQPLAGAQYWSSHVFAAIRGEPVEVLFDQPRQPTWRG 223
[Close]
BLAST of mRNA_M-pyrifera_M_contig116773.3474.1 vs. uniprot
Match: UPI001AA08012 (NUDIX hydrolase N-terminal domain-containing protein n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001AA08012)

HSP 1 Score: 129 bits (325), Expect = 1.350e-35
Identity = 58/91 (63.74%), Postives = 64/91 (70.33%), Query Frame = 1 
Query:    1 ILDGQRRGFTRIPLVSLVFHCRMTGGELNPHPLECSDVGWFSEGALPEPTGGADLWATQAFAAIRGEDVPVQFDQPRTPPWRGDVDHEDSA 273
            + DG R GFT+IPL SLVFHC   GGEL PHPLEC+DVGWFSEG LP    GAD WA  AF AIRGE + V +DQPR PPWR D    D +
Sbjct:  141 LFDGLRLGFTQIPLYSLVFHCHAVGGELEPHPLECADVGWFSEGDLPPHVAGADHWADHAFRAIRGEPLDVLYDQPRMPPWRADDPSPDDS 231
[Close]
BLAST of mRNA_M-pyrifera_M_contig116773.3474.1 vs. uniprot
Match: A0A2E8BH38_9ACTN (Hydrolase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8BH38_9ACTN)

HSP 1 Score: 129 bits (323), Expect = 2.560e-35
Identity = 60/84 (71.43%), Postives = 65/84 (77.38%), Query Frame = 1 
Query:    1 ILDGQRRGFTRIPLVSLVFHCRMTGGELNPHPLECSDVGWFSEGALPEPTGGADLWATQAFAAIRGEDVPVQFDQPRTPPWRGD 252
            ILDG R GFT IPL SLVFHCRMTGGEL PHPLEC DVG+F+E  LPE T   D WA +AF AIRGE + V+FD PR PPWRGD
Sbjct:  148 ILDGFRLGFTGIPLYSLVFHCRMTGGELKPHPLECRDVGFFAEDCLPEDTILPDEWAEEAFRAIRGEYIDVRFDAPRDPPWRGD 231
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116773.3474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D8LSE5_9ACTN3.130e-4982.76Hydrolase n=6 Tax=Acidimicrobiaceae bacterium TaxI... [more]
A0A7X6AUR2_9ACTN2.940e-4374.12Hydrolase n=1 Tax=Actinomycetia bacterium TaxID=18... [more]
A0A6B1B1M2_9ACTN2.990e-3873.81NUDIX domain-containing protein n=1 Tax=Acidimicro... [more]
A0A3M2HFN3_ACTSX1.370e-3770.59NUDIX domain-containing protein n=1 Tax=Actinomyce... [more]
A0A6G0A8X4_9ACTN1.610e-3767.44NUDIX domain-containing protein n=2 Tax=Bacteria T... [more]
A0A6B1EFA0_9ACTN5.420e-3669.88NUDIX domain-containing protein n=8 Tax=Acidimicro... [more]
A0A7W0LPR4_9ACTN5.950e-3668.67NUDIX hydrolase N-terminal domain-containing prote... [more]
A0A538LYP7_9ACTN7.160e-3667.47NUDIX domain-containing protein n=1 Tax=Actinomyce... [more]
UPI001AA080121.350e-3563.74NUDIX hydrolase N-terminal domain-containing prote... [more]
A0A2E8BH38_9ACTN2.560e-3571.43Hydrolase n=2 Tax=Acidimicrobiaceae bacterium TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116773contigM-pyrifera_M_contig116773:3..278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score112.1
Seed ortholog evalue1.4e-22
Seed eggNOG ortholog1313172.YM304_05030
KEGG koko:K03574,ko:K06889
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Hydrolase of X-linked nucleoside diphosphate N terminal
EggNOG OGs2HG6C@201174,4CN3B@84992,COG1051@1,COG1051@2
EC3.6.1.55
COG Functional cat.F
Best tax levelAcidimicrobiia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Exons1
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815684.4680288-CDS-M-pyrifera_M_contig116773:2..2781622815684.4680288-CDS-M-pyrifera_M_contig116773:2..278Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116773 3..278 +
1692277520.6520455-CDS-M-pyrifera_M_contig116773:2..2781692277520.6520455-CDS-M-pyrifera_M_contig116773:2..278Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116773 3..278 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116773.3474.1prot_M-pyrifera_M_contig116773.3474.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116773 3..278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116773.3474.1

>prot_M-pyrifera_M_contig116773.3474.1 ID=prot_M-pyrifera_M_contig116773.3474.1|Name=mRNA_M-pyrifera_M_contig116773.3474.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
ILDGQRRGFTRIPLVSLVFHCRMTGGELNPHPLECSDVGWFSEGALPEPT
GGADLWATQAFAAIRGEDVPVQFDQPRTPPWRGDVDHEDSA*
back to top

mRNA from alignment at M-pyrifera_M_contig116773:3..278+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116773.3474.1 ID=mRNA_M-pyrifera_M_contig116773.3474.1|Name=mRNA_M-pyrifera_M_contig116773.3474.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig116773:3..278+ (Macrocystis pyrifera P11B4 male)
ATCCTCGACGGCCAGCGACGTGGCTTCACCCGCATCCCGCTCGTCTCGCT
CGTCTTCCATTGTCGGATGACGGGTGGCGAGCTAAACCCGCATCCGCTCG
AGTGCAGCGATGTCGGGTGGTTCAGCGAGGGTGCCCTGCCCGAGCCCACC
GGCGGCGCCGATCTCTGGGCGACGCAGGCATTCGCCGCAATCCGCGGCGA
GGATGTACCCGTACAGTTCGATCAGCCCCGCACGCCGCCGTGGCGAGGCG
ATGTCGACCACGAGGATTCAGCATGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig116773:3..278+

>mRNA_M-pyrifera_M_contig116773.3474.1 ID=mRNA_M-pyrifera_M_contig116773.3474.1|Name=mRNA_M-pyrifera_M_contig116773.3474.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig116773:3..278+ (Macrocystis pyrifera P11B4 male)
ATCCTCGACGGCCAGCGACGTGGCTTCACCCGCATCCCGCTCGTCTCGCT
CGTCTTCCATTGTCGGATGACGGGTGGCGAGCTAAACCCGCATCCGCTCG
AGTGCAGCGATGTCGGGTGGTTCAGCGAGGGTGCCCTGCCCGAGCCCACC
GGCGGCGCCGATCTCTGGGCGACGCAGGCATTCGCCGCAATCCGCGGCGA
GGATGTACCCGTACAGTTCGATCAGCCCCGCACGCCGCCGTGGCGAGGCG
ATGTCGACCACGAGGATTCAGCATGAATCCTCGACGGCCAGCGACGTGGC
TTCACCCGCATCCCGCTCGTCTCGCTCGTCTTCCATTGTCGGATGACGGG
TGGCGAGCTAAACCCGCATCCGCTCGAGTGCAGCGATGTCGGGTGGTTCA
GCGAGGGTGCCCTGCCCGAGCCCACCGGCGGCGCCGATCTCTGGGCGACG
CAGGCATTCGCCGCAATCCGCGGCGAGGATGTACCCGTACAGTTCGATCA
GCCCCGCACGCCGCCGTGGCGAGGCGATGTCGACCACGAGGATTCAGCAT
GA
back to top