mRNA_M-pyrifera_M_contig116700.3459.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116700.3459.1
Unique NamemRNA_M-pyrifera_M_contig116700.3459.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig116700.3459.1 vs. uniprot
Match: A0A7S1F7I7_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1F7I7_NOCSC)

HSP 1 Score: 118 bits (296), Expect = 1.460e-30
Identity = 64/140 (45.71%), Postives = 89/140 (63.57%), Query Frame = 1 
Query:   16 GSEHRLRSENLPFDIDVWYPRIRQFTPRTVFLPLAREEAVALMNAYQ-QFCGRDHLRLCDVDTLSKLEQRITEATDDNFTATGAFLRLCGRSAKDAEPGDPEQLKAAYEAALSAVMDEDLGLDRPKDSPATAGMKLKAIA 432
             SEH LRSENLPFDID WYP+++Q+T  TVFLPL+R E  AL+ AY+ +F     + + D + L +LE RI +A  D+F  TG F+RLCGRSAKD +P D  +++  Y+ AL  +     G   P+ +P+ A     A+A
Sbjct:    2 NSEHLLRSENLPFDIDNWYPQLKQWTFETVFLPLSRGEGRALIRAYRFRFLSGGFVGIEDAEALRRLEDRIDDAICDHFADTGCFMRLCGRSAKDGDPLDRGRVQREYKEALERIAGPPGG---PRTAPSAAVTMQAAMA 138
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BLAST of mRNA_M-pyrifera_M_contig116700.3459.1 vs. uniprot
Match: A0A814UCB5_9BILA (Cell division cycle protein 123 homolog n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814UCB5_9BILA)

HSP 1 Score: 122 bits (306), Expect = 7.220e-30
Identity = 70/149 (46.98%), Postives = 96/149 (64.43%), Query Frame = 1 
Query:    1 AMLEIGSEHRLRSENLPFDIDVWYPRIRQFTPRTVFLPLAREEAVALMNAYQQ--FCGRDHLRLCDVDTLSKLEQRITEATDDNFTA-TGAFLRLCGRSAKDAEPGDPEQLKAAYEAALSAVMDEDLGLDRPKDSPATAGMKLKAIARV 438
            ++L+I SEH+LRSENLPFDIDVWYP + QFT  +VFLPL R EA+A+++ YQ+  +  R HL   D+ TL +LE +I         A TGAFLRLCGRS KD EP + + +   YE  L  ++D D  ++   ++      KL+AI+RV
Sbjct:    5 SILQINSEHKLRSENLPFDIDVWYPLVEQFTFPSVFLPLTRLEAMAILH-YQETRYLSRIHLTNDDITTLRQLEHKIDHELKQPLLAETGAFLRLCGRSPKDGEPLNHKNVIEKYEKELQNLIDNDSAVETDPNT------KLRAISRV 146
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BLAST of mRNA_M-pyrifera_M_contig116700.3459.1 vs. uniprot
Match: A0A2P6NN03_9EUKA (GGACT domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NN03_9EUKA)

HSP 1 Score: 114 bits (286), Expect = 4.650e-27
Identity = 68/149 (45.64%), Postives = 89/149 (59.73%), Query Frame = 1 
Query:    1 AMLEIGSEHRLRSENLPFDIDVWYPRIRQFTPRTVFLPLAREEAVALMNAYQQFCGR---DHLRLCDVDTLSKLEQRITEATDDNFTATGAFLRLCGRSAKDAEPGDPEQLKAAYEAALSAVMDEDLGLDRPKDSPATAGMKLKAIARV 438
            ++L+IGSEH+LRSENLPFD DVWYP +   T +T+F+PL R EA A++ AYQ    R   +     DV  L  LE R+  A  D F   GAF+RLCGRS KD EP D ++   +Y+ AL  ++            P TA  KL+AIA+V
Sbjct:    9 SLLQIGSEHKLRSENLPFDTDVWYPSLSSVTFKTIFVPLTRPEARAII-AYQNLRYRGKQNQFYTDDVSVLESLEDRLDVAVKDAFPE-GAFIRLCGRSPKDGEPFDRQKPWQSYQHALRDLIQHG--------EPLTANTKLRAIAQV 147
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BLAST of mRNA_M-pyrifera_M_contig116700.3459.1 vs. uniprot
Match: A0A7S2WCI4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WCI4_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.040e-15
Identity = 51/120 (42.50%), Postives = 67/120 (55.83%), Query Frame = 1 
Query:   19 SEHRLRSENLPFDIDVWYPRIRQFTPRTVFLPLAREEAVALMN----AYQQFCGRDHLRLCDVDTLSKLEQRIT---EATDDNFTATGAFLRLCGRSAKDAEPGDPEQLKAAYEAALSAV 357
            +EHR+R+ENL FD+DVWYP +R  T  T FLPL   EA A++      +++      L    V  L  L+QRI    E+  D F   GAFLRLCGRS KD EP + +   + Y   L A+
Sbjct:   32 TEHRVRAENLAFDLDVWYPPLRNHTYETHFLPLTLAEARAVIEFHDCTWRRAISSGALSFESVVALDALQQRIQVLLESHPDTFHF-GAFLRLCGRSPKDGEPLNRQTPLSMYRQQLHAM 150
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116700.3459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S1F7I7_NOCSC1.460e-3045.71Hypothetical protein (Fragment) n=1 Tax=Noctiluca ... [more]
A0A814UCB5_9BILA7.220e-3046.98Cell division cycle protein 123 homolog n=1 Tax=Di... [more]
A0A2P6NN03_9EUKA4.650e-2745.64GGACT domain-containing protein n=1 Tax=Planoproto... [more]
A0A7S2WCI4_9STRA1.040e-1542.50Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116700contigM-pyrifera_M_contig116700:122..559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue1.3e-17
Seed eggNOG ortholog227086.JGI_V11_91033
Hectar predicted targeting categoryother localisation
EggNOG free text desc.D123
EggNOG OGs2EMY2@1,2SRGX@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size438
Cds size435
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815683.7752466-UTR-M-pyrifera_M_contig116700:121..1241622815683.7752466-UTR-M-pyrifera_M_contig116700:121..124Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116700 122..124 +
1692277520.3195205-UTR-M-pyrifera_M_contig116700:121..1241692277520.3195205-UTR-M-pyrifera_M_contig116700:121..124Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116700 122..124 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815683.7880132-CDS-M-pyrifera_M_contig116700:124..5591622815683.7880132-CDS-M-pyrifera_M_contig116700:124..559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116700 125..559 +
1692277520.3292224-CDS-M-pyrifera_M_contig116700:124..5591692277520.3292224-CDS-M-pyrifera_M_contig116700:124..559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116700 125..559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116700.3459.1prot_M-pyrifera_M_contig116700.3459.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116700 125..559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116700.3459.1

>prot_M-pyrifera_M_contig116700.3459.1 ID=prot_M-pyrifera_M_contig116700.3459.1|Name=mRNA_M-pyrifera_M_contig116700.3459.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
MLEIGSEHRLRSENLPFDIDVWYPRIRQFTPRTVFLPLAREEAVALMNAY
QQFCGRDHLRLCDVDTLSKLEQRITEATDDNFTATGAFLRLCGRSAKDAE
PGDPEQLKAAYEAALSAVMDEDLGLDRPKDSPATAGMKLKAIARV
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mRNA from alignment at M-pyrifera_M_contig116700:122..559+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116700.3459.1 ID=mRNA_M-pyrifera_M_contig116700.3459.1|Name=mRNA_M-pyrifera_M_contig116700.3459.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig116700:122..559+ (Macrocystis pyrifera P11B4 male)
GCCATGCTGGAGATTGGATCGGAACACAGGCTCCGCTCTGAGAACTTGCC
GTTCGACATCGATGTGTGGTACCCTCGCATTCGCCAGTTCACACCGAGGA
CAGTGTTCTTGCCTCTTGCCAGGGAGGAAGCAGTGGCACTCATGAATGCC
TATCAACAGTTCTGCGGGAGGGACCATCTTCGGCTCTGTGACGTTGACAC
CCTCTCCAAACTCGAGCAGCGCATAACAGAAGCCACTGACGACAATTTCA
CTGCGACTGGCGCGTTTCTCCGGCTCTGCGGCCGCTCTGCCAAGGATGCT
GAGCCCGGCGACCCTGAGCAACTCAAAGCAGCCTACGAGGCTGCGCTCAG
CGCCGTCATGGACGAAGATCTGGGGCTCGATAGACCCAAAGACAGTCCTG
CAACAGCTGGCATGAAGCTGAAGGCCATTGCAAGGGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116700:122..559+

>mRNA_M-pyrifera_M_contig116700.3459.1 ID=mRNA_M-pyrifera_M_contig116700.3459.1|Name=mRNA_M-pyrifera_M_contig116700.3459.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig116700:122..559+ (Macrocystis pyrifera P11B4 male)
ATGCTGGAGATTGGATCGGAACACAGGCTCCGCTCTGAGAACTTGCCGTT
CGACATCGATGTGTGGTACCCTCGCATTCGCCAGTTCACACCGAGGACAG
TGTTCTTGCCTCTTGCCAGGGAGGAAGCAGTGGCACTCATGAATGCCTAT
CAACAGTTCTGCGGGAGGGACCATCTTCGGCTCTGTGACGTTGACACCCT
CTCCAAACTCGAGCAGCGCATAACAGAAGCCACTGACGACAATTTCACTG
CGACTGGCGCGTTTCTCCGGCTCTGCGGCCGCTCTGCCAAGGATGCTGAG
CCCGGCGACCCTGAGCAACTCAAAGCAGCCTACGAGGCTGCGCTCAGCGC
CGTCATGGACGAAGATCTGGGGCTCGATAGACCCAAAGACAGTCCTGCAA
CAGCTGGCATGAAGCTGAAGGCCATTGCAAGGGTCATGCTGGAGATTGGA
TCGGAACACAGGCTCCGCTCTGAGAACTTGCCGTTCGACATCGATGTGTG
GTACCCTCGCATTCGCCAGTTCACACCGAGGACAGTGTTCTTGCCTCTTG
CCAGGGAGGAAGCAGTGGCACTCATGAATGCCTATCAACAGTTCTGCGGG
AGGGACCATCTTCGGCTCTGTGACGTTGACACCCTCTCCAAACTCGAGCA
GCGCATAACAGAAGCCACTGACGACAATTTCACTGCGACTGGCGCGTTTC
TCCGGCTCTGCGGCCGCTCTGCCAAGGATGCTGAGCCCGGCGACCCTGAG
CAACTCAAAGCAGCCTACGAGGCTGCGCTCAGCGCCGTCATGGACGAAGA
TCTGGGGCTCGATAGACCCAAAGACAGTCCTGCAACAGCTGGCATGAAGC
TGAAGGCCATTGCAAGGGTC
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