mRNA_M-pyrifera_M_contig116685.3456.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116685.3456.1
Unique NamemRNA_M-pyrifera_M_contig116685.3456.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116685.3456.1 vs. uniprot
Match: L1JGE0_GUITC (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JGE0_GUITC)

HSP 1 Score: 84.0 bits (206), Expect = 8.550e-16
Identity = 63/185 (34.05%), Postives = 84/185 (45.41%), Query Frame = 1
Query:    1 FELEEELCETLSDTKEGGWPGARPPSVYQ--KSEEESPWTWLLKAARRLIPGLESAAEIAQREREGERDWWASKGRKNAVIGGIFRARNDHSVRFLAATYHMPCAFNTPQVMVTHGALLLQFLQRCAADAAVPLVLMGDFNFQPFSSVYRLYTTGEISDED--IPWVPAEEEWTPHVEKRVASAY 543
            F L+E     +SD K   WP   P + ++  K   +S W W ++  R  I  +  A                 K R N +I      R   +  F  ATYHMPC F  P VMVTH +L L   Q  A +   PL+  GDFNF+P  S Y L T G I+ +D   P +PA + W P +   + SAY
Sbjct:  127 FRLKESRIVRVSDLK--SWPKPPPENPFKRLKGAVKSLW-WKIRQIRPPIDPVFDA-----------------KKRANQMIVLNIEDRETET-SFWVATYHMPCQFRVPAVMVTHTSLALSEAQLAARNQ--PLIFCGDFNFKPGDSPYNLVTQGFIAKDDQHYPTMPANDPWVPKIRYAMKSAY 288          
BLAST of mRNA_M-pyrifera_M_contig116685.3456.1 vs. uniprot
Match: A0A7S0EG92_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EG92_9CRYP)

HSP 1 Score: 84.0 bits (206), Expect = 1.340e-15
Identity = 60/183 (32.79%), Postives = 85/183 (46.45%), Query Frame = 1
Query:    1 FELEEELCETLSDTKEGGWPGARPPSVYQKSEEESPWTWLLKAARRLIPGLESAAEIAQREREGERDWWASKGRKNAVIGGIFRARNDHSVRFLAATYHMPCAFNTPQVMVTHGALLLQFLQRCAADAAVPLVLMGDFNFQPFSSVYRLYTTG--EISDEDIPWVPAEEEWTPHVEKRVASAY 543
            + L+E     +SD K+  WP   P + +++ +      WL    R++ P ++   +              +K R N +I      R   +  F  ATYHMPC F  P VMVTH +L L   Q  A +   PL+  GDFNF+P  S Y L T G  E  DE  P +P  + W P V+  + SAY
Sbjct:  188 YRLKESRIIRVSDLKQ--WPKPPPENPFKRLKGAIKGLWL--KIRQIRPPIDPVFD--------------AKKRANQMILLNVEDRETET-SFWVATYHMPCQFRVPAVMVTHTSLALSEAQLAARNQ--PLIFCGDFNFKPGDSPYNLVTQGFIEKKDEHYPTMPVNDPWVPKVKYPMKSAY 349          
BLAST of mRNA_M-pyrifera_M_contig116685.3456.1 vs. uniprot
Match: A0A7S4KTJ3_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KTJ3_GUITH)

HSP 1 Score: 84.0 bits (206), Expect = 1.340e-15
Identity = 63/185 (34.05%), Postives = 84/185 (45.41%), Query Frame = 1
Query:    1 FELEEELCETLSDTKEGGWPGARPPSVYQ--KSEEESPWTWLLKAARRLIPGLESAAEIAQREREGERDWWASKGRKNAVIGGIFRARNDHSVRFLAATYHMPCAFNTPQVMVTHGALLLQFLQRCAADAAVPLVLMGDFNFQPFSSVYRLYTTGEISDED--IPWVPAEEEWTPHVEKRVASAY 543
            F L+E     +SD K   WP   P + ++  K   +S W W ++  R  I  +  A                 K R N +I      R   +  F  ATYHMPC F  P VMVTH +L L   Q  A +   PL+  GDFNF+P  S Y L T G I+ +D   P +PA + W P +   + SAY
Sbjct:  188 FRLKESRIVRVSDLK--SWPKPPPENPFKRLKGAVKSLW-WKIRQIRPPIDPVFDA-----------------KKRANQMIVLNIEDRETET-SFWVATYHMPCQFRVPAVMVTHTSLALSEAQLAARNQ--PLIFCGDFNFKPGDSPYNLVTQGFIAKDDQHYPTMPANDPWVPKIRYAMKSAY 349          
BLAST of mRNA_M-pyrifera_M_contig116685.3456.1 vs. uniprot
Match: A0A7S3E4C4_9CHLO (Hypothetical protein n=2 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S3E4C4_9CHLO)

HSP 1 Score: 79.3 bits (194), Expect = 4.270e-14
Identity = 49/115 (42.61%), Postives = 63/115 (54.78%), Query Frame = 1
Query:  211 SKGRKNAVIGGIFRARNDHSVRFLAATYHMPCAFNTPQVMVTHGALLLQFLQRCAADAAVPLVLMGDFNFQPFSSVYRLYTTGEI--SDEDIPW-VPAEEEWTPHVEKRVASAYV 546
            +K R N +I  + + +N     F  ATYHMPC F  P+VMV H AL +Q +Q  A D   P +L GDFNF+P  + Y L T G+I    E  P     EE+WTP  E    SAY+
Sbjct:  218 AKNRMNTMI--LMKLKNAGGKTFCIATYHMPCMFWAPKVMVIHTALAMQKVQDFAKDD--PCILAGDFNFKPGDAGYELATKGDIPTDHEHFPEPTHPEEQWTPACEYGFESAYL 328          
BLAST of mRNA_M-pyrifera_M_contig116685.3456.1 vs. uniprot
Match: A0A6B2L950_9EUKA (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L950_9EUKA)

HSP 1 Score: 78.6 bits (192), Expect = 5.240e-14
Identity = 49/119 (41.18%), Postives = 65/119 (54.62%), Query Frame = 1
Query:  199 DWWASKGRKNAVIGGIFRARNDHSVRFLAATYHMPCAFNTPQVMVTHGALLLQFLQRCAADAAVPLVLMGDFNFQPFSSVYRLYTTGEISDEDIPW----VPAEEEWTPHVEKRVASAY 543
            ++ +SK R+N  I      R      F  ATYH+PC F  P+ M  H AL  Q  Q+ A     PLVL GDFN QP++S YRL TTG ++D+D       +PA + W P V+  + SAY
Sbjct:  142 EYESSKERQNRQIMVRLEHRGSQE-EFCVATYHVPCLFQFPRTMNIHTALSCQAAQKFAKGG--PLVLCGDFNIQPWTSTYRLVTTGRLNDDDKNHPKTVMPAGDHWDPVVQP-MRSAY 256          
BLAST of mRNA_M-pyrifera_M_contig116685.3456.1 vs. uniprot
Match: A0A5B8MV46_9CHLO (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MV46_9CHLO)

HSP 1 Score: 77.8 bits (190), Expect = 1.120e-13
Identity = 59/179 (32.96%), Postives = 82/179 (45.81%), Query Frame = 1
Query:   52 GWPG------ARPPSVYQKSEEE-----SPWTWLLKAARRLIPGLESAAEIAQREREGERDWWA-SKGRKNAVIGGIFRARNDHSVRFLAATYHMPCAFNTPQVMVTHGALLLQFLQRCAADAAVPLVLMGDFNFQPFSSVYRLYTTGEISDEDIPWVPA---EEEWTPHVEKRVASAY 543
            GW G      A P   Y   E E         W  +A   L   + +  +      + E+D +  ++ R N ++    R+R   +  F   TYHMPC F  P+VMV H AL  Q +Q  A D     +L+GDFNF+P  S Y L T G +S++D  +  A   EE W P +E    SAY
Sbjct:   98 GWQGYMGSAIAFPTKAYAAEEVEIVRVADTKAWPRRAKPTLFDKVSTTVQSLLFGPKKEQDHFELARNRMNTMVLVKLRSRGGGN-SFCVGTYHMPCMFWAPKVMVIHSALACQKVQDFAKDDHC--ILLGDFNFKPTDSCYELCTKGSLSEDDEFYPEATHPEESWKPEMEYGFESAY 273          
BLAST of mRNA_M-pyrifera_M_contig116685.3456.1 vs. uniprot
Match: A0A7S2XUN0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUN0_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.370e-13
Identity = 54/126 (42.86%), Postives = 71/126 (56.35%), Query Frame = 1
Query:  187 EGERDWWASKGRKNAVIGGIF-RARNDHSVRFLA-ATYHMPCAFNTPQVMVTHGALLLQFLQRCAADAAVPLVLMGDFNFQPFSSVYRLYTTGEISD--EDIPWVPAEE-EWTPHVEKR-VASAYV 546
            E  RD W    R+N ++  +F R R+  S R L  ATYHMPC F+ P+VMV H AL  Q ++R A     P +L GDFNF+P SS Y L T G + +  E  P    EE EW P ++   + SAY+
Sbjct:    6 EEARDEWQESLRRNNIL--LFARLRHLASGRALGVATYHMPCKFDFPEVMVIHSALAGQHVERLAGKD--PYLLAGDFNFKPGSSQYELLTKGGLEEGHEHYPKKLFEEDEWKPALKNEPMKSAYL 127          
BLAST of mRNA_M-pyrifera_M_contig116685.3456.1 vs. uniprot
Match: A0A7S2TI34_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TI34_9EUKA)

HSP 1 Score: 71.6 bits (174), Expect = 3.900e-12
Identity = 48/123 (39.02%), Postives = 60/123 (48.78%), Query Frame = 1
Query:  199 DWWASKGRKNAVIGGIFRARNDHSVRFLAATYHMPCAFNTPQVMVTHGALLLQFLQRCAADAAVPLVLMGDFNFQPFSSVYRLYTTGEIS-DEDIPWVPAEEE-------WTPHVEKRVASAY 543
            DW  S+ R N +I      R    V+F  ATYHMPCAF  P+VMV H A+     +       +P VL GDFN +P    YRL T G I  D    + PA  E       WT  + K++ SAY
Sbjct:    4 DWIDSRRRSNTMIYATLADRVT-GVQFGVATYHMPCAFFAPRVMVLHSAMAAT--RTAQLSEGLPFVLTGDFNLKPGDETYRLLTEGVIPPDPKATFTPALPENSKIKPFWT-EIPKKLKSAY 122          
BLAST of mRNA_M-pyrifera_M_contig116685.3456.1 vs. uniprot
Match: A0A813C782_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813C782_9DINO)

HSP 1 Score: 73.2 bits (178), Expect = 9.160e-12
Identity = 54/185 (29.19%), Postives = 80/185 (43.24%), Query Frame = 1
Query:   79 VYQKSEEESPWTWLLKAA----RRLIPGLESAAEIAQREREGERD---WWASKGRKNAVIGGIFRARNDHSVRF---LAATYHMPCAFNTPQVMVTHGALLLQFLQRCAADAA-------------------VPLVLMGDFNFQPFSSVYRLYTTGEISDEDI-----------PWVPAEEEWTP 513
            + ++ +  S W W   A+     R       AA+I + +  GE     W  ++ RKNAVI    R    ++  F   + ATYHMPCAF TP +M  H   L+Q +   A + A                   +P ++ GDFN QP + +Y+L+T GE +  D+           P  P   EW P
Sbjct: 1054 ISRRLKAGSHWAWRRAASVLERLRFRRAATEAADIREEQPRGESSETLWRRARERKNAVIMVHVRIITQNADSFTDVIVATYHMPCAFRTPALMAIHATRLMQIVHGYALERAGNTKDVSNWGYQQPDLVPFIPYLVAGDFNIQPGTDLYKLFT-GEATTHDVLTRHGFELPQGPQDPQGLEWEP 1237          
BLAST of mRNA_M-pyrifera_M_contig116685.3456.1 vs. uniprot
Match: A0A7S1G458_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G458_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 9.680e-12
Identity = 49/123 (39.84%), Postives = 66/123 (53.66%), Query Frame = 1
Query:  202 WWASKGRKNAVIGGIFRARNDHSVRFLA-ATYHMPCAFNTPQVMVTHGALLLQFLQRCAADAAVPLVLMGDFNFQP----FSSVYRLYTTGEISDEDIPWVPAE----EEWTPHVEKRVASAY 543
            W  +KG+ N ++    R R+  S   LA  TYHMPCAF  P +MV H AL+ Q +Q+ A   A   VL GDFN +P    F+  Y + TTG++ D   P  P      E WTP + + + SAY
Sbjct:  200 WNRAKGKWNTMV--FVRVRDRASGERLALGTYHMPCAFREPALMVIHAALVAQAVQKRARGDAY--VLCGDFNIKPHDQGFNPCYDMLTTGKL-DRSHPAYPVPPGPWETWTPELREGMQSAY 317          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116685.3456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
L1JGE0_GUITC8.550e-1634.05Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A7S0EG92_9CRYP1.340e-1532.79Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S4KTJ3_GUITH1.340e-1534.05Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A7S3E4C4_9CHLO4.270e-1442.61Hypothetical protein n=2 Tax=Chloropicon laureae T... [more]
A0A6B2L950_9EUKA5.240e-1441.18Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A5B8MV46_9CHLO1.120e-1332.96Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A7S2XUN0_9STRA1.370e-1342.86Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2TI34_9EUKA3.900e-1239.02Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A813C782_9DINO9.160e-1229.19Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A7S1G458_9STRA9.680e-1239.84Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116685contigM-pyrifera_M_contig116685:1..549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue7.2e-18
Seed eggNOG ortholog2850.Phatr44427
KEGG koko:K19612
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGs2CXNT@1,2RYRW@2759,2XBZQ@2836
EC3.1.13.4
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019,ko03029
Exons1
Model size549
Cds size549
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815683.6523905-CDS-M-pyrifera_M_contig116685:0..5491622815683.6523905-CDS-M-pyrifera_M_contig116685:0..549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116685 1..549 -
1692277520.2837088-CDS-M-pyrifera_M_contig116685:0..5491692277520.2837088-CDS-M-pyrifera_M_contig116685:0..549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116685 1..549 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116685.3456.1prot_M-pyrifera_M_contig116685.3456.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116685 1..549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116685.3456.1

>prot_M-pyrifera_M_contig116685.3456.1 ID=prot_M-pyrifera_M_contig116685.3456.1|Name=mRNA_M-pyrifera_M_contig116685.3456.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=183bp
FELEEELCETLSDTKEGGWPGARPPSVYQKSEEESPWTWLLKAARRLIPG
LESAAEIAQREREGERDWWASKGRKNAVIGGIFRARNDHSVRFLAATYHM
PCAFNTPQVMVTHGALLLQFLQRCAADAAVPLVLMGDFNFQPFSSVYRLY
TTGEISDEDIPWVPAEEEWTPHVEKRVASAYVV
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mRNA from alignment at M-pyrifera_M_contig116685:1..549-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116685.3456.1 ID=mRNA_M-pyrifera_M_contig116685.3456.1|Name=mRNA_M-pyrifera_M_contig116685.3456.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=549bp|location=Sequence derived from alignment at M-pyrifera_M_contig116685:1..549- (Macrocystis pyrifera P11B4 male)
TTCGAGCTGGAGGAAGAGCTCTGCGAAACGCTGTCAGACACAAAGGAGGG AGGCTGGCCAGGCGCACGGCCGCCAAGTGTGTACCAGAAGAGTGAAGAGG AGAGTCCTTGGACGTGGCTGTTGAAGGCAGCACGGAGACTCATTCCTGGC CTCGAATCTGCGGCAGAGATTGCGCAAAGAGAGAGAGAAGGAGAGAGAGA TTGGTGGGCATCAAAGGGCAGGAAAAACGCAGTGATTGGGGGGATTTTCA GGGCGAGAAACGACCACAGTGTGAGGTTCTTGGCGGCCACTTATCATATG CCCTGTGCGTTCAACACTCCCCAGGTTATGGTCACCCACGGGGCGCTGCT GCTGCAGTTCCTCCAGAGGTGCGCAGCCGATGCAGCGGTGCCTCTGGTGC TCATGGGAGACTTCAATTTCCAACCCTTTTCCTCTGTCTATCGACTCTAC ACCACAGGCGAGATTTCAGATGAGGATATTCCTTGGGTGCCAGCGGAAGA GGAGTGGACTCCCCACGTGGAGAAGAGGGTCGCCAGTGCGTATGTGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116685:1..549-

>mRNA_M-pyrifera_M_contig116685.3456.1 ID=mRNA_M-pyrifera_M_contig116685.3456.1|Name=mRNA_M-pyrifera_M_contig116685.3456.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1098bp|location=Sequence derived from alignment at M-pyrifera_M_contig116685:1..549- (Macrocystis pyrifera P11B4 male)
TTCGAGCTGGAGGAAGAGCTCTGCGAAACGCTGTCAGACACAAAGGAGGG
AGGCTGGCCAGGCGCACGGCCGCCAAGTGTGTACCAGAAGAGTGAAGAGG
AGAGTCCTTGGACGTGGCTGTTGAAGGCAGCACGGAGACTCATTCCTGGC
CTCGAATCTGCGGCAGAGATTGCGCAAAGAGAGAGAGAAGGAGAGAGAGA
TTGGTGGGCATCAAAGGGCAGGAAAAACGCAGTGATTGGGGGGATTTTCA
GGGCGAGAAACGACCACAGTGTGAGGTTCTTGGCGGCCACTTATCATATG
CCCTGTGCGTTCAACACTCCCCAGGTTATGGTCACCCACGGGGCGCTGCT
GCTGCAGTTCCTCCAGAGGTGCGCAGCCGATGCAGCGGTGCCTCTGGTGC
TCATGGGAGACTTCAATTTCCAACCCTTTTCCTCTGTCTATCGACTCTAC
ACCACAGGCGAGATTTCAGATGAGGATATTCCTTGGGTGCCAGCGGAAGA
GGAGTGGACTCCCCACGTGGAGAAGAGGGTCGCCAGTGCGTATGTGGTGT
TCGAGCTGGAGGAAGAGCTCTGCGAAACGCTGTCAGACACAAAGGAGGGA
GGCTGGCCAGGCGCACGGCCGCCAAGTGTGTACCAGAAGAGTGAAGAGGA
GAGTCCTTGGACGTGGCTGTTGAAGGCAGCACGGAGACTCATTCCTGGCC
TCGAATCTGCGGCAGAGATTGCGCAAAGAGAGAGAGAAGGAGAGAGAGAT
TGGTGGGCATCAAAGGGCAGGAAAAACGCAGTGATTGGGGGGATTTTCAG
GGCGAGAAACGACCACAGTGTGAGGTTCTTGGCGGCCACTTATCATATGC
CCTGTGCGTTCAACACTCCCCAGGTTATGGTCACCCACGGGGCGCTGCTG
CTGCAGTTCCTCCAGAGGTGCGCAGCCGATGCAGCGGTGCCTCTGGTGCT
CATGGGAGACTTCAATTTCCAACCCTTTTCCTCTGTCTATCGACTCTACA
CCACAGGCGAGATTTCAGATGAGGATATTCCTTGGGTGCCAGCGGAAGAG
GAGTGGACTCCCCACGTGGAGAAGAGGGTCGCCAGTGCGTATGTGGTG
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