prot_M-pyrifera_M_contig116679.3453.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig116679.3453.1
Unique Nameprot_M-pyrifera_M_contig116679.3453.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length164
Homology
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BLAST of mRNA_M-pyrifera_M_contig116679.3453.1 vs. uniprot
Match: A0A7S1R2H0_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1R2H0_NEODS)

HSP 1 Score: 61.6 bits (148), Expect = 4.570e-8
Identity = 47/116 (40.52%), Postives = 62/116 (53.45%), Query Frame = 0 
Query:   41 LRTLCLKGATLRSADVLLAVAAACPQLRELDLRRCHPVDGAALAQVLARCSRLEAVRFSNC-ESVGDGHVAALLQ-CPRLAVLQLKGCPRVTDEGFEAAASAAAELQELDLRGTAV 154
            L +L L G      DVLLAVAA+CP LR L +R    V   ALA +  RC+RL  +  + C  +  +  VAA+   CP L VL L  C  VT    +A +S  A+L+ LD+  T V
Sbjct:  203 LESLNLNGVVSVRDDVLLAVAASCPNLRCLTMRDMRSVSPRALAAI-TRCARLTHLDVTCCWANFSEDDVAAIGSGCPSLRVLILGRCHGVTASSLDAISSGCADLRRLDVNHTEV 317
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116679.3453.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S1R2H0_NEODS4.570e-840.52Hypothetical protein n=1 Tax=Neobodo designis TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 90..115
e-value: 21.0
score: 12.0
coord: 64..89
e-value: 0.15
score: 21.2
coord: 116..140
e-value: 56.0
score: 8.7
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..162
e-value: 1.5E-25
score: 91.8
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 28..153
NoneNo IPR availablePANTHERPTHR13382:SF6SCF E3 UBIQUITIN LIGASE COMPLEX F-BOX PROTEIN GRR1coord: 28..153
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 1..155

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116679contigM-pyrifera_M_contig116679:19..510 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116679.3453.1mRNA_M-pyrifera_M_contig116679.3453.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig116679 19..510 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig116679.3453.1 ID=prot_M-pyrifera_M_contig116679.3453.1|Name=mRNA_M-pyrifera_M_contig116679.3453.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=164bp
LTDSVLQRLLSGSQPEALDLSRYAGGGRVLARLLEQCGGGLRTLCLKGAT
LRSADVLLAVAAACPQLRELDLRRCHPVDGAALAQVLARCSRLEAVRFSN
CESVGDGHVAALLQCPRLAVLQLKGCPRVTDEGFEAAASAAAELQELDLR
GTAVSAVCVEATVA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675LRR_dom_sf