mRNA_M-pyrifera_M_contig116676.3452.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116676.3452.1
Unique NamemRNA_M-pyrifera_M_contig116676.3452.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116676.3452.1 vs. uniprot
Match: A0A6G2K224_9ACTN (Diaminopropionate ammonia-lyase n=5 Tax=Bacteria TaxID=2 RepID=A0A6G2K224_9ACTN)

HSP 1 Score: 182 bits (463), Expect = 1.040e-53
Identity = 94/139 (67.63%), Postives = 108/139 (77.70%), Query Frame = 1
Query:    4 THYRSPTRSPSLIGVAPLDANCLQQSAAAGPPTHVSGPHRSIMVGLNCGRPSPVAWPRVSTGVDRFASVGDDAARRAMRDLGDAGVVAGETGAASLAGLRAALSDHSTRVALGNLADKTALILVTEGATDPAAYREIVG 420
            THYRS +  P L+G  P+DANC+Q SA AG  THV GPHRSIMVGLNCG+PSPVAWPR++ GVD FA+V D+AAR AMRDL DA VVAGETGAASLAGL A L D + R ALG+L+    ++ VTEGATDP AY  IVG
Sbjct:  236 THYRSGSHRPVLVGTEPIDANCVQASALAGGLTHVPGPHRSIMVGLNCGQPSPVAWPRLAAGVDWFAAVDDEAARGAMRDLADAAVVAGETGAASLAGLAALLGDPAAREALGDLSGSCVMVTVTEGATDPDAYERIVG 374          
BLAST of mRNA_M-pyrifera_M_contig116676.3452.1 vs. uniprot
Match: A0A2E0RVU1_9ACTN (Diaminopropionate ammonia-lyase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0RVU1_9ACTN)

HSP 1 Score: 182 bits (461), Expect = 9.360e-53
Identity = 100/140 (71.43%), Postives = 109/140 (77.86%), Query Frame = 1
Query:    4 THYRSPTR-SPSLIGVAPLDANCLQQSAAAGPPTHVSGPHRSIMVGLNCGRPSPVAWPRVSTGVDRFASVGDDAARRAMRDLGDAGVVAGETGAASLAGLRAALSDHSTRVALGNLADKTALILVTEGATDPAAYREIVG 420
            THYR   R S  L GV PLDANC+Q SA AG P  V GPH SIMVGLNCG PS VAWPR++TGVD F +V DDAA RAMRDL +A VVAGETGAASLAGLRA L+D S   AL +L DKTAL++VTEGATDPAAYR IVG
Sbjct:  302 THYRGEHRVSTVLAGVEPLDANCVQTSALAGVPMDVPGPHGSIMVGLNCGMPSRVAWPRLATGVDWFVAVDDDAACRAMRDLAEAAVVAGETGAASLAGLRALLADRSANDALPDLGDKTALVIVTEGATDPAAYRRIVG 441          
BLAST of mRNA_M-pyrifera_M_contig116676.3452.1 vs. uniprot
Match: A0A6B1BC26_9ACTN (Diaminopropionate ammonia-lyase n=3 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A6B1BC26_9ACTN)

HSP 1 Score: 152 bits (383), Expect = 8.330e-42
Identity = 83/139 (59.71%), Postives = 95/139 (68.35%), Query Frame = 1
Query:    4 THYRSPTRSPSLIGVAPLDANCLQQSAAAGPPTHVSGPHRSIMVGLNCGRPSPVAWPRVSTGVDRFASVGDDAARRAMRDLGDAGVVAGETGAASLAGLRAALSDHSTRVALGNLADKTALILVTEGATDPAAYREIVG 420
            TH+RS    P L+ V P DANC+Q S   G  T   GPHRSIMVGLNCG PSP+AWP +++GVD   SV  DAA  AM DL DA VVAGETG+ASLAG+RA L+D     AL + A  T LI+VTEGATDPA Y   VG
Sbjct:  236 THFRSGAHRPVLVSVEPDDANCVQLSTINGEITETPGPHRSIMVGLNCGVPSPLAWPMMASGVDWCVSVNSDAAGAAMGDLADAQVVAGETGSASLAGVRALLADEEGSAALEDPASATVLIMVTEGATDPANYERFVG 374          
BLAST of mRNA_M-pyrifera_M_contig116676.3452.1 vs. uniprot
Match: A0A7C1UG78_9ACTN (Diaminopropionate ammonia-lyase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1UG78_9ACTN)

HSP 1 Score: 151 bits (382), Expect = 1.170e-41
Identity = 78/138 (56.52%), Postives = 97/138 (70.29%), Query Frame = 1
Query:    7 HYRSPTRSPSLIGVAPLDANCLQQSAAAGPPTHVSGPHRSIMVGLNCGRPSPVAWPRVSTGVDRFASVGDDAARRAMRDLGDAGVVAGETGAASLAGLRAALSDHSTRVALGNLADKTALILVTEGATDPAAYREIVG 420
            HYR    + +++GV P+DANC+Q SA AG  T+V GPH SIMVGLNCG PS +AWP VS GVD   S+ D+ AR+AMRDL + G+VAGETGAA+L G  A   D +   AL +    T L++VTEGATDP +Y EIVG
Sbjct:  237 HYRQDGDTTTIVGVEPVDANCVQASATAGQITNVPGPHESIMVGLNCGTPSLIAWPLVSAGVDWLVSIDDETARQAMRDLAEVGIVAGETGAAALGGFAALAGDPAWTSALADPEAATVLLVVTEGATDPRSYTEIVG 374          
BLAST of mRNA_M-pyrifera_M_contig116676.3452.1 vs. uniprot
Match: UPI000C7EA498 (diaminopropionate ammonia-lyase n=1 Tax=Deinococcus planocerae TaxID=1737569 RepID=UPI000C7EA498)

HSP 1 Score: 132 bits (331), Expect = 3.870e-34
Identity = 76/144 (52.78%), Postives = 89/144 (61.81%), Query Frame = 1
Query:    7 HYRSPTRSPSLIGVAPLDANCLQQSAAAGPPTHVSGPHRSIMVGLNCGRPSPVAWPRVSTGVDRFASVGDDAARRAMRDLGDAGVVAGETGAASLAGLRAALSDHST---RVALGNLADKTALILVTEGATDPAAYREIVGLAG 429
            HYR+P R   ++GV PL A C+ +S  AG P  V GPH SIM GLNCGRPSPVAWP +S G+  F +V D  A  AMR L   G+V+GE+GAA LAGL A L+   T   R AL        L+L TEGATDP  Y  IVG  G
Sbjct:  244 HYRAPGRGTRVVGVEPLAAACVLRSVEAGHPVDVPGPHDSIMAGLNCGRPSPVAWPLISGGISAFVAVPDARAEDAMRLLARDGIVSGESGAAGLAGLLAVLTGPDTIAHREALRVDEGSRVLVLSTEGATDPRGYARIVGSRG 387          
BLAST of mRNA_M-pyrifera_M_contig116676.3452.1 vs. uniprot
Match: A0A6J4V310_9CHLR (Diaminopropionate ammonia-lyase n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4V310_9CHLR)

HSP 1 Score: 130 bits (327), Expect = 1.250e-33
Identity = 76/145 (52.41%), Postives = 89/145 (61.38%), Query Frame = 1
Query:    1 TTHYRSPTRSPSLIGVAPLDANCLQQSAAAGPPTHVSGPHRSIMVGLNCGRPSPVAWPRVSTGVDRFASVGDDAARRAMRDLGDAGVVAGETGAASLAGLRAALSDHSTRVALG--NLADKTALILV-TEGATDPAAYREIVGLA 426
            T HYR P             A C+  S AAG P  V GPHRSIM GLNCG+PSPVAWP VS G+D F ++GD+ AR AMR L  AG+VAGETGAA L GL A   +   R  L    +  +T ++L  TEGATDPAAY  +VG A
Sbjct:  243 TRHYRRP------------GAACVLASVAAGRPVAVPGPHRSIMAGLNCGQPSPVAWPVVSRGIDLFVAIGDERAREAMRALAGAGIVAGETGAAGLGGLLARRRERGARATLAPPGVTPRTRVLLFNTEGATDPAAYARVVGRA 375          
BLAST of mRNA_M-pyrifera_M_contig116676.3452.1 vs. uniprot
Match: A0A7Y2SPH8_9CHLR (Diaminopropionate ammonia-lyase n=2 Tax=Chloroflexales TaxID=32064 RepID=A0A7Y2SPH8_9CHLR)

HSP 1 Score: 127 bits (318), Expect = 2.040e-32
Identity = 74/137 (54.01%), Postives = 85/137 (62.04%), Query Frame = 1
Query:    7 HYRSPTRSPSLIGVAPLDANCLQQSAAAGPPTHVSGPHRSIMVGLNCGRPSPVAWPRVSTGVDRFASVGDDAARRAMRDLGDAGVVAGETGAASLAGLRAALSDHSTRVALGNLADKTALILVTEGATDPAAYREIV 417
            HYR     P ++GV P  A C+  S  AG  + V GPHRSIM GLNCG PSPVAWP +S G+D   +V DD AR AMR L   GVVAGETGAA +AGL A   D   R  L       A+ ++TEGATDP AY EIV
Sbjct:  224 HYRQ-GGGPRVVGVEPDQAACVLASLRAGQISEVPGPHRSIMAGLNCGLPSPVAWPIISAGLDAALAVPDDLARVAMRALAAEGVVAGETGAAGVAGLLALCDDAEARARLVIGPSTHAMAIITEGATDPEAYAEIV 359          
BLAST of mRNA_M-pyrifera_M_contig116676.3452.1 vs. uniprot
Match: A0A3A0AVP8_9CHLR (Diaminopropionate ammonia-lyase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3A0AVP8_9CHLR)

HSP 1 Score: 127 bits (319), Expect = 2.200e-32
Identity = 79/147 (53.74%), Postives = 91/147 (61.90%), Query Frame = 1
Query:    1 TTHYRSP--TRSPSLIGVAPLDANCLQQSAAAGPPTHVSGPHRSIMVGLNCGRPSPVAWPRVSTGVDRFASVGDDAARRAMRDLGDAGVVAGETGAASLAGLRAALSDH---STRVALGNLADKTALILVTEGATDPAAYREIVGLA 426
            T HYR P     P+L+GV PL A  +  S  AG    V GPH SIM GLNCG PS +AWP +S G+D   +V D+ AR AMR L   G+ AGETGAA +AGL  A         R ALG  A+ TAL +VTEGATDPAAY EIVG A
Sbjct:  241 TRHYRRPELAEMPALLGVEPLLAAGMLASLHAGRMVSVPGPHTSIMAGLNCGAPSTLAWPVLSAGLDALVAVEDERAREAMRLLAADGIEAGETGAAGVAGLLEAAHGAYAGELRSALGLTAETTALAIVTEGATDPAAYAEIVGRA 387          
BLAST of mRNA_M-pyrifera_M_contig116676.3452.1 vs. uniprot
Match: L0A7K7_DEIPD (Threonine dehydratase n=1 Tax=Deinococcus peraridilitoris (strain DSM 19664 / LMG 22246 / CIP 109416 / KR-200) TaxID=937777 RepID=L0A7K7_DEIPD)

HSP 1 Score: 127 bits (319), Expect = 2.230e-32
Identity = 72/141 (51.06%), Postives = 85/141 (60.28%), Query Frame = 1
Query:    7 HYRSPTRSPSLIGVAPLDANCLQQSAAAGPPTHVSGPHRSIMVGLNCGRPSPVAWPRVSTGVDRFASVGDDAARRAMRDLGDAGVVAGETGAASLAG---LRAALSDHSTRVALGNLADKTALILVTEGATDPAAYREIVG 420
            HYR    S  ++GV P  A C+ +S  AG    V GPH SIM GLNCGRPSPVAWP VS G+D F +V D+ AR AMR L   G+V+GE+GAA LAG   L         R  LG  AD   L++ TEGATDP  Y  +VG
Sbjct:  239 HYRRAGASSRVVGVEPTRAPCVLESVLAGGLVSVPGPHDSIMAGLNCGRPSPVAWPWVSQGIDAFLAVPDERAREAMRLLARDGIVSGESGAAGLAGFIELFTGAGREERRERLGLTADSALLVISTEGATDPVGYARVVG 379          
BLAST of mRNA_M-pyrifera_M_contig116676.3452.1 vs. uniprot
Match: A0A7J9WU78_9ACTN (Diaminopropionate ammonia-lyase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7J9WU78_9ACTN)

HSP 1 Score: 125 bits (314), Expect = 1.070e-31
Identity = 71/139 (51.08%), Postives = 88/139 (63.31%), Query Frame = 1
Query:    7 HYRSPTR-SPSLIGVAPLDANCLQQSAAAGPPTHVSGPHRSIMVGLNCGRPSPVAWPRVSTGVDRFASVGDDAARRAMRDLGDAGVVAGETGAASLAGLRAALSDHSTRVALGNLADKTALILVTEGATDPAAYREIVG 420
            H+RS  R SP ++GV P  + C+  S  AG    + GPH SIMVGLNCG PS VAWP VS G D + ++ D+ A   MR L  AGV++GETGAA +A L   L++   R  LG   +  AL+L TEGATDPAAY  IVG
Sbjct:  239 HFRSGVRPSPRMVGVEPEASACVLASMEAGRLVTIPGPHDSIMVGLNCGTPSVVAWPLVSRGFDAYVALADERAGEGMRALARAGVISGETGAAGIACLLELLNERDARARLGIDRNTAALVLSTEGATDPAAYEAIVG 377          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116676.3452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G2K224_9ACTN1.040e-5367.63Diaminopropionate ammonia-lyase n=5 Tax=Bacteria T... [more]
A0A2E0RVU1_9ACTN9.360e-5371.43Diaminopropionate ammonia-lyase n=1 Tax=Acidimicro... [more]
A0A6B1BC26_9ACTN8.330e-4259.71Diaminopropionate ammonia-lyase n=3 Tax=Acidimicro... [more]
A0A7C1UG78_9ACTN1.170e-4156.52Diaminopropionate ammonia-lyase n=1 Tax=Acidimicro... [more]
UPI000C7EA4983.870e-3452.78diaminopropionate ammonia-lyase n=1 Tax=Deinococcu... [more]
A0A6J4V310_9CHLR1.250e-3352.41Diaminopropionate ammonia-lyase n=1 Tax=uncultured... [more]
A0A7Y2SPH8_9CHLR2.040e-3254.01Diaminopropionate ammonia-lyase n=2 Tax=Chloroflex... [more]
A0A3A0AVP8_9CHLR2.200e-3253.74Diaminopropionate ammonia-lyase n=1 Tax=Chloroflex... [more]
L0A7K7_DEIPD2.230e-3251.06Threonine dehydratase n=1 Tax=Deinococcus peraridi... [more]
A0A7J9WU78_9ACTN1.070e-3151.08Diaminopropionate ammonia-lyase n=1 Tax=Actinomyce... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116676contigM-pyrifera_M_contig116676:117..557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score126.3
Seed ortholog evalue1.2e-26
Seed eggNOG ortholog1121381.JNIV01000034_gene1545
KEGG rclassRC00331,RC00418,RC02600
KEGG koko:K01751,ko:K01754,ko:K17989
KEGG ReactionR00220,R00590,R00996
KEGG Pathwayko00260,ko00270,ko00290,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map00290,map01100,map01110,map01130,map01200,map01230
KEGG ModuleM00570
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
EggNOG OGsCOG1171@1,COG1171@2
EC4.3.1.15,4.3.1.17,4.3.1.19
COG Functional cat.E
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size441
Cds size441
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815683.5186837-CDS-M-pyrifera_M_contig116676:116..5571622815683.5186837-CDS-M-pyrifera_M_contig116676:116..557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116676 117..557 -
1692277520.2262242-CDS-M-pyrifera_M_contig116676:116..5571692277520.2262242-CDS-M-pyrifera_M_contig116676:116..557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116676 117..557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116676.3452.1prot_M-pyrifera_M_contig116676.3452.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116676 117..557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116676.3452.1

>prot_M-pyrifera_M_contig116676.3452.1 ID=prot_M-pyrifera_M_contig116676.3452.1|Name=mRNA_M-pyrifera_M_contig116676.3452.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=147bp
TTHYRSPTRSPSLIGVAPLDANCLQQSAAAGPPTHVSGPHRSIMVGLNCG
RPSPVAWPRVSTGVDRFASVGDDAARRAMRDLGDAGVVAGETGAASLAGL
RAALSDHSTRVALGNLADKTALILVTEGATDPAAYREIVGLAGSAH*
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mRNA from alignment at M-pyrifera_M_contig116676:117..557-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116676.3452.1 ID=mRNA_M-pyrifera_M_contig116676.3452.1|Name=mRNA_M-pyrifera_M_contig116676.3452.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=441bp|location=Sequence derived from alignment at M-pyrifera_M_contig116676:117..557- (Macrocystis pyrifera P11B4 male)
ACCACCCACTACCGCTCGCCGACGCGCAGCCCCAGCCTCATCGGGGTCGC ACCACTCGACGCGAACTGCCTCCAGCAATCCGCAGCCGCAGGACCGCCCA CCCATGTGTCGGGTCCACACCGCTCGATCATGGTCGGCCTGAACTGCGGC CGCCCCTCCCCCGTGGCCTGGCCCCGGGTCTCGACCGGTGTCGACCGGTT CGCCTCGGTCGGCGACGATGCGGCTCGTCGAGCCATGCGTGATCTCGGCG ACGCCGGCGTCGTCGCGGGTGAGACAGGTGCAGCGTCCCTGGCCGGACTG CGTGCGGCGCTCTCCGACCATTCGACACGCGTCGCTCTTGGGAATCTGGC CGACAAGACCGCCCTGATTCTCGTCACCGAAGGGGCAACCGACCCCGCGG CCTATCGCGAGATCGTCGGCCTGGCCGGCTCTGCCCACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116676:117..557-

>mRNA_M-pyrifera_M_contig116676.3452.1 ID=mRNA_M-pyrifera_M_contig116676.3452.1|Name=mRNA_M-pyrifera_M_contig116676.3452.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=882bp|location=Sequence derived from alignment at M-pyrifera_M_contig116676:117..557- (Macrocystis pyrifera P11B4 male)
ACCACCCACTACCGCTCGCCGACGCGCAGCCCCAGCCTCATCGGGGTCGC
ACCACTCGACGCGAACTGCCTCCAGCAATCCGCAGCCGCAGGACCGCCCA
CCCATGTGTCGGGTCCACACCGCTCGATCATGGTCGGCCTGAACTGCGGC
CGCCCCTCCCCCGTGGCCTGGCCCCGGGTCTCGACCGGTGTCGACCGGTT
CGCCTCGGTCGGCGACGATGCGGCTCGTCGAGCCATGCGTGATCTCGGCG
ACGCCGGCGTCGTCGCGGGTGAGACAGGTGCAGCGTCCCTGGCCGGACTG
CGTGCGGCGCTCTCCGACCATTCGACACGCGTCGCTCTTGGGAATCTGGC
CGACAAGACCGCCCTGATTCTCGTCACCGAAGGGGCAACCGACCCCGCGG
CCTATCGCGAGATCGTCGGCCTGGCCGGCTCTGCCCACTGAACCACCCAC
TACCGCTCGCCGACGCGCAGCCCCAGCCTCATCGGGGTCGCACCACTCGA
CGCGAACTGCCTCCAGCAATCCGCAGCCGCAGGACCGCCCACCCATGTGT
CGGGTCCACACCGCTCGATCATGGTCGGCCTGAACTGCGGCCGCCCCTCC
CCCGTGGCCTGGCCCCGGGTCTCGACCGGTGTCGACCGGTTCGCCTCGGT
CGGCGACGATGCGGCTCGTCGAGCCATGCGTGATCTCGGCGACGCCGGCG
TCGTCGCGGGTGAGACAGGTGCAGCGTCCCTGGCCGGACTGCGTGCGGCG
CTCTCCGACCATTCGACACGCGTCGCTCTTGGGAATCTGGCCGACAAGAC
CGCCCTGATTCTCGTCACCGAAGGGGCAACCGACCCCGCGGCCTATCGCG
AGATCGTCGGCCTGGCCGGCTCTGCCCACTGA
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