mRNA_M-pyrifera_M_contig116573.3447.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116573.3447.1
Unique NamemRNA_M-pyrifera_M_contig116573.3447.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116573.3447.1 vs. uniprot
Match: A0A3D4UM04_9BACT (Uncharacterized protein n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A3D4UM04_9BACT)

HSP 1 Score: 125 bits (313), Expect = 1.430e-31
Identity = 70/172 (40.70%), Postives = 98/172 (56.98%), Query Frame = 1
Query:    1 QTSFDIVAAAYSADQKRGGIDTLAQFNSSFGDGAGHYRNVRLPLPAGSPFVKVRRYTEVVYPSSKVHGYDTHQRHSGR-PHIYYAIPTAKLPVMMFDGSVSVRQTQDANPGFQPNDPTSAEPTVFRYMPFSIEGDAVNPEGDEVTGYYKWTRGGLRGIDFGGSEINTGQISP 513
            ++S++     YS DQ  G +  L Q N+ +           L       F+K R++TEV + S K + +DT+ RH        Y  P A+ P++ FDGSVSVR   ++NPGF+P DPT+AEP++ +         + + EG    GYY+WTRGGLRGIDFGGSEI+TGQ  P
Sbjct:  181 ESSYETSVVTYSVDQAVGSLQPLDQHNNPY-----------LQFDRNPLFLKSRKFTEVRFTSGKAYMFDTYDRHYAELADTIYNEPNARQPILFFDGSVSVRDADESNPGFRPRDPTNAEPSLVK--------PSSSSEG--YPGYYRWTRGGLRGIDFGGSEISTGQPRP 331          
BLAST of mRNA_M-pyrifera_M_contig116573.3447.1 vs. uniprot
Match: A0A7Y5VZG6_9BACT (Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Y5VZG6_9BACT)

HSP 1 Score: 124 bits (312), Expect = 2.470e-31
Identity = 68/170 (40.00%), Postives = 100/170 (58.82%), Query Frame = 1
Query:    4 TSFDIVAAAYSADQKRGGIDTLAQFNSSFGDGAGHYRNVRLPLPAGSPFVKVRRYTEVVYPSSKVHGYDTHQRHSGRPHIYYAIPTAKLPVMMFDGSVSVRQTQDANPGFQPNDPTSAEPTVFRYMPFSIEGDAVNPEG---DEVTGYYKWTRGGLRGIDFGGSEINTGQ 504
            +++ IV   +  DQ+ G   T  Q+ +          N+ L    GS  +  RR  EVVYPS KV  ++ + RH   P +++A P A++P++ FD SV  R+T +ANPGF PN P +  PT+F Y P  +  +     G   + VTGYY+WTRGGL+GID+GG+E++TGQ
Sbjct:  183 STYQIVPQTWCPDQRNGSQTTYIQYPAD--------HNLFL---VGSAGLAKRRAAEVVYPSGKVLVFEFYARHEKTP-LFFAYPDARVPLLFFDASVRTRKTGEANPGFMPNAPKNKNPTLFDYSPLILGFEPPTQSGANKETVTGYYRWTRGGLKGIDYGGTEVDTGQ 340          
BLAST of mRNA_M-pyrifera_M_contig116573.3447.1 vs. uniprot
Match: A0A6N2EKC5_9BACT (Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A6N2EKC5_9BACT)

HSP 1 Score: 122 bits (306), Expect = 2.090e-30
Identity = 63/117 (53.85%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  163 RYTEVVYPSSKVHGYDTHQRHSGRPHIYYAIPTAKLPVMMFDGSVSVRQTQDANPGFQPNDPTSAEPTVFRYM---PFSIEGDAVNPEGDEVTGYYKWTRGGLRGIDFGGSEINTGQ 504
            R ++V +PS+KV  +DT QR+ G+ +IY+A P A+LPV MFDGSV V +T+ ANPG+ P  PT+A PT F Y    P+  +    +P    V GYY+WTRGGLRGIDF GSEI TGQ
Sbjct:  231 RASDVAFPSNKVLLHDTEQRYFGKENIYFAFPDARLPVTMFDGSVRVERTEGANPGWDPTRPTTALPTRFNYSDPDPWLAQPRPSDPA--RVVGYYRWTRGGLRGIDFNGSEIGTGQ 345          
BLAST of mRNA_M-pyrifera_M_contig116573.3447.1 vs. uniprot
Match: A0A3M2BII0_9BACT (Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2BII0_9BACT)

HSP 1 Score: 121 bits (304), Expect = 3.550e-30
Identity = 60/130 (46.15%), Postives = 85/130 (65.38%), Query Frame = 1
Query:  130 LPAGSPFVKVRRYTEVVYPSSKVHGYDTHQRHSGRPHIYYAIPTAKLPVMMFDGSVSVRQTQDANPGFQPNDPTSAEPTVFRYMP--FSIEGDAV--NPEGDEVTGYYKWTRGGLRGIDFGGSEINTGQI 507
            +  GS  +  R+  +V +P  KV  ++ H RH+ R  I+YA   A+   +MFDGSV+  +T DANPGF+PN P+S +PT+F Y P   S E + +    +GD VTGYY+WTRGGL+G D+G  EI+TGQ+
Sbjct:  210 MSVGSKPLGRRKMGQVSFPGQKVFMFEFHDRHTNRNGIFYAYEVAQSSQLMFDGSVNSNKTGDANPGFKPNQPSSRQPTIFIYKPTVLSFEPEPLYDRQQGDRVTGYYRWTRGGLKGADYGSKEIDTGQM 339          
BLAST of mRNA_M-pyrifera_M_contig116573.3447.1 vs. uniprot
Match: A0A2A4RPD3_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A2A4RPD3_9BACT)

HSP 1 Score: 120 bits (300), Expect = 1.160e-29
Identity = 71/169 (42.01%), Postives = 100/169 (59.17%), Query Frame = 1
Query:    1 QTSFDIVAAAYSADQKRGGIDTLAQFNSSFGDGAGHYRNVRLPLPAGSPFVKVRRYTEVVYPSSKVHGYDTHQRH-SGRPHIYYAIPTAKLPVMMFDGSVSVRQTQDANPGFQPNDPTSAEPTVFRYMPFSIEGDAVNPEGDEVTGYYKWTRGGLRGIDFGGSEINTGQ 504
            ++S++     YS+D  R  +  + Q  +S+G     +R++         FV  RR+T+V + S K + +DT+ RH +  P   Y  P +K P++ FDGSVSVR T+DAN GFQP DP++ EPT+       I+ +A   E     GYY+WTRGGL GIDFGGSE NTGQ
Sbjct:  182 ESSYETSIVTYSSDSSRSTVSPIDQHGASWGV---FHRSLN--------FVVHRRFTQVRFTSGKAYMFDTYDRHFASVPDTLYFEPDSKQPILFFDGSVSVRATKDANHGFQPLDPSNPEPTM-------IKKEARGTE--SFPGYYRWTRGGLEGIDFGGSEANTGQ 330          
BLAST of mRNA_M-pyrifera_M_contig116573.3447.1 vs. uniprot
Match: A0A3M2BLU3_9BACT (Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2BLU3_9BACT)

HSP 1 Score: 116 bits (290), Expect = 3.580e-28
Identity = 63/164 (38.41%), Postives = 94/164 (57.32%), Query Frame = 1
Query:    1 QTSFDIVAAAYSADQKRGGIDTLAQFNSSFGDGAGHYRNVRLPLPAGSPFVKVRRYTEVVYPSSKVHGYDTHQRHSGRPHIYYAIPTAKLPVMMFDGSVSVRQTQDANPGFQPNDPTSAEPTVFRYMPFSIEGDAVNPEGDEVTGYYKWTRGGLRGIDFGGSEI 492
            ++S++  A  +S DQ  G +D ++Q     G+G   +      L +       RR++EVV+PS K H +D++ RH+     +YA   +  P++ FDGSV +  T D+NPGF+P DP S EPT+ R +   I G+  +    E  G+Y+WTRGGL GIDFG  EI
Sbjct:  184 ESSYETAAVTHSVDQAGGALDPISQH----GEGIWTFSRPNRYLVS-------RRWSEVVFPSGKAHMFDSYDRHASNEVRFYADERSVQPILFFDGSVRISATADSNPGFRPRDPASPEPTIMRLV---IPGEGTS----EYVGFYRWTRGGLGGIDFGSGEI 329          
BLAST of mRNA_M-pyrifera_M_contig116573.3447.1 vs. uniprot
Match: UPI001986BBD6 (Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=UPI001986BBD6)

HSP 1 Score: 114 bits (284), Expect = 4.060e-27
Identity = 65/167 (38.92%), Postives = 91/167 (54.49%), Query Frame = 1
Query:    4 TSFDIVAAAYSADQKRGGIDTLAQFNSSFGDGAGHYRNVRLPLPAGSPFVKVRRYTEVVYPSSKVHGYDTHQRHSGRPHIYYAIPTAKLPVMMFDGSVSVRQTQDANPGFQPNDPTSAEPTVFRYMPFSIEGDAVNPEGDEVTGYYKWTRGGLRGIDFGGSEINTGQ 504
            +S+  V A +S DQ RG + T+ Q       G  H       +P  +P    R+Y +V YPS KV  +D+ QRH G+   +YA    K P+  FD SV    T+D+N GF+P+ PT+  PT+  Y P   E  A+N     + G Y+WTRGGLRG+D+GG  + TG 
Sbjct:  197 SSYRTVIAGFSPDQNRGAVPTVTQ-------GPTHATYF---VPDITPMGD-RKYADVSYPSQKVWFFDSFQRHYGKIQPFYAYSICKQPLGFFDASVRNMNTRDSNRGFRPDAPTADAPTLINYTPSPFESPAINEP--NIAGRYQWTRGGLRGVDYGGDAVRTGN 350          
BLAST of mRNA_M-pyrifera_M_contig116573.3447.1 vs. uniprot
Match: A0A7Y5W8L3_9BACT (Type II secretion system protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Y5W8L3_9BACT)

HSP 1 Score: 112 bits (281), Expect = 1.010e-26
Identity = 57/118 (48.31%), Postives = 78/118 (66.10%), Query Frame = 1
Query:  160 RRYTEVVYPSSKVHGYDTHQRHSGRPHIYYAIPTAKLPVMMFDGSVSVRQTQDANPGFQPNDPTSAEPTVFRYMPFSIE-----GDAVNPEGDEVTGYYKWTRGGLRGIDFGGSEINT 498
            RR  +V +PS KVH ++T  RHSG+  ++YA P AK P++ FD SV +R+T DAN GF P+ P  + PT FRY+P   E     G    P  D + GY++WTRGGL+GID+GG+E+ T
Sbjct:  232 RRMGDVSFPSQKVHHHETFARHSGKRSLFYAYPEAKSPLLFFDQSVVMRRTGDANKGFDPSQPFRSFPTRFRYIPGLWEVPTPSGGFYPPFEDLLDGYFRWTRGGLQGIDYGGAELIT 349          
BLAST of mRNA_M-pyrifera_M_contig116573.3447.1 vs. uniprot
Match: A0A5M4D8C3_9CYAN (Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Cyanobacteria bacterium CYA TaxID=2484221 RepID=A0A5M4D8C3_9CYAN)

HSP 1 Score: 110 bits (274), Expect = 7.990e-26
Identity = 63/172 (36.63%), Postives = 96/172 (55.81%), Query Frame = 1
Query:    4 TSFDIVAAAYSADQKRGGIDTLAQFNSSFGDGAGHYRNVRLPLPAGSPFVKVRRYTEVVYPSSKVHGYDTHQRHSGRPHIYYAIPTAKLPVMMFDGSVSVRQTQDANPGFQPNDPTSAEPTVFRYMPFSIEGDAV----NPEGDEVTGYYKWTRGGLRGIDFGGSEINTGQI 507
            +++  V A++S D  RG   T++Q        +G Y      +  G+  +  RR + V +P  KV  ++ H RH+ +  I+YA   A+   ++FDGSV  R+T DAN GF+PN P     + F Y P  +  +         GD V GYY+WTRGGL+G+D+GG++INTGQ+
Sbjct:  175 STYQAVPASWSEDTGRGHDTTVSQ--------SGDYEL----MSVGTKPLGRRRMSHVSFPGQKVFLFEFHDRHTNKNGIFYAYEIARSSQLLFDGSVDSRKTGDANKGFRPNVPHLPGASTFYYRPRELTFEPAPLYDTVRGDLVKGYYRWTRGGLKGVDYGGTDINTGQM 334          
BLAST of mRNA_M-pyrifera_M_contig116573.3447.1 vs. uniprot
Match: A0A5M4D1V5_9CYAN (Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Cyanobacteria bacterium CYA TaxID=2484221 RepID=A0A5M4D1V5_9CYAN)

HSP 1 Score: 109 bits (273), Expect = 9.960e-26
Identity = 60/168 (35.71%), Postives = 96/168 (57.14%), Query Frame = 1
Query:    1 QTSFDIVAAAYSADQKRGGIDTLAQFNSSFGDGAGHYRNVRLPLPAGSPFVKVRRYTEVVYPSSKVHGYDTHQRHSGRPHIYYAIPTAKLPVMMFDGSVSVRQTQDANPGFQPNDPTSAEPTVFRYMPFSIEGDAVNPEGDEVTGYYKWTRGGLRGIDFGGSEINTGQ 504
            +++++ +A  YS D   G ++ L+Q   S  +    ++  ++       ++  RR +EVV+PS K H +D+  RH+G   ++YA   A  P++ FDGSV   +T ++N GF+P +P S EP+V   M     G        E  G+++WTRGGLRGID+G  EI+TGQ
Sbjct:  179 ESTYETIAQTYSVDMVGGRLEPLSQHGRSIWE----FQRAQI-------YLATRRASEVVFPSGKAHMFDSFGRHNGGEVLFYADERASQPILFFDGSVRTEETSESNRGFRPREPGSPEPSV---MTLVTPGVGTT----EYVGHHRWTRGGLRGIDWGAGEISTGQ 328          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116573.3447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D4UM04_9BACT1.430e-3140.70Uncharacterized protein n=2 Tax=Phycisphaerae TaxI... [more]
A0A7Y5VZG6_9BACT2.470e-3140.00Prepilin-type N-terminal cleavage/methylation doma... [more]
A0A6N2EKC5_9BACT2.090e-3053.85Prepilin-type N-terminal cleavage/methylation doma... [more]
A0A3M2BII0_9BACT3.550e-3046.15Prepilin-type N-terminal cleavage/methylation doma... [more]
A0A2A4RPD3_9BACT1.160e-2942.01Uncharacterized protein n=1 Tax=bacterium TaxID=18... [more]
A0A3M2BLU3_9BACT3.580e-2838.41Prepilin-type N-terminal cleavage/methylation doma... [more]
UPI001986BBD64.060e-2738.92Prepilin-type N-terminal cleavage/methylation doma... [more]
A0A7Y5W8L3_9BACT1.010e-2648.31Type II secretion system protein n=1 Tax=Phycispha... [more]
A0A5M4D8C3_9CYAN7.990e-2636.63Prepilin-type N-terminal cleavage/methylation doma... [more]
A0A5M4D1V5_9CYAN9.960e-2635.71Prepilin-type N-terminal cleavage/methylation doma... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116573contigM-pyrifera_M_contig116573:2..517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size516
Cds size516
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815683.3305998-CDS-M-pyrifera_M_contig116573:1..5171622815683.3305998-CDS-M-pyrifera_M_contig116573:1..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116573 2..517 +
1692277520.1557076-CDS-M-pyrifera_M_contig116573:1..5171692277520.1557076-CDS-M-pyrifera_M_contig116573:1..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116573 2..517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116573.3447.1prot_M-pyrifera_M_contig116573.3447.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116573 2..517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116573.3447.1

>prot_M-pyrifera_M_contig116573.3447.1 ID=prot_M-pyrifera_M_contig116573.3447.1|Name=mRNA_M-pyrifera_M_contig116573.3447.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=172bp
QTSFDIVAAAYSADQKRGGIDTLAQFNSSFGDGAGHYRNVRLPLPAGSPF
VKVRRYTEVVYPSSKVHGYDTHQRHSGRPHIYYAIPTAKLPVMMFDGSVS
VRQTQDANPGFQPNDPTSAEPTVFRYMPFSIEGDAVNPEGDEVTGYYKWT
RGGLRGIDFGGSEINTGQISP*
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mRNA from alignment at M-pyrifera_M_contig116573:2..517+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116573.3447.1 ID=mRNA_M-pyrifera_M_contig116573.3447.1|Name=mRNA_M-pyrifera_M_contig116573.3447.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig116573:2..517+ (Macrocystis pyrifera P11B4 male)
CAGACGAGCTTTGATATCGTCGCGGCAGCATACAGCGCAGATCAGAAACG CGGCGGGATAGACACGCTGGCGCAGTTCAACTCGTCGTTCGGAGACGGGG CAGGGCACTACAGAAATGTGCGCCTGCCGCTCCCTGCGGGGTCCCCCTTT GTGAAAGTTCGGCGCTACACGGAAGTTGTCTATCCAAGCAGCAAGGTGCA CGGATACGACACGCATCAGCGCCATTCGGGTCGTCCTCACATCTACTACG CGATCCCGACAGCGAAACTCCCGGTGATGATGTTCGATGGATCAGTCTCT GTGCGCCAGACACAGGACGCGAATCCGGGTTTTCAGCCCAATGATCCGAC TTCAGCTGAGCCGACAGTGTTCCGCTACATGCCGTTCAGCATCGAAGGTG ACGCGGTCAATCCCGAAGGAGACGAAGTGACGGGATACTACAAATGGACT CGCGGCGGTCTGCGAGGCATTGATTTCGGCGGCTCAGAAATCAACACAGG ACAGATCAGTCCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116573:2..517+

>mRNA_M-pyrifera_M_contig116573.3447.1 ID=mRNA_M-pyrifera_M_contig116573.3447.1|Name=mRNA_M-pyrifera_M_contig116573.3447.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1032bp|location=Sequence derived from alignment at M-pyrifera_M_contig116573:2..517+ (Macrocystis pyrifera P11B4 male)
CAGACGAGCTTTGATATCGTCGCGGCAGCATACAGCGCAGATCAGAAACG
CGGCGGGATAGACACGCTGGCGCAGTTCAACTCGTCGTTCGGAGACGGGG
CAGGGCACTACAGAAATGTGCGCCTGCCGCTCCCTGCGGGGTCCCCCTTT
GTGAAAGTTCGGCGCTACACGGAAGTTGTCTATCCAAGCAGCAAGGTGCA
CGGATACGACACGCATCAGCGCCATTCGGGTCGTCCTCACATCTACTACG
CGATCCCGACAGCGAAACTCCCGGTGATGATGTTCGATGGATCAGTCTCT
GTGCGCCAGACACAGGACGCGAATCCGGGTTTTCAGCCCAATGATCCGAC
TTCAGCTGAGCCGACAGTGTTCCGCTACATGCCGTTCAGCATCGAAGGTG
ACGCGGTCAATCCCGAAGGAGACGAAGTGACGGGATACTACAAATGGACT
CGCGGCGGTCTGCGAGGCATTGATTTCGGCGGCTCAGAAATCAACACAGG
ACAGATCAGTCCCTGACAGACGAGCTTTGATATCGTCGCGGCAGCATACA
GCGCAGATCAGAAACGCGGCGGGATAGACACGCTGGCGCAGTTCAACTCG
TCGTTCGGAGACGGGGCAGGGCACTACAGAAATGTGCGCCTGCCGCTCCC
TGCGGGGTCCCCCTTTGTGAAAGTTCGGCGCTACACGGAAGTTGTCTATC
CAAGCAGCAAGGTGCACGGATACGACACGCATCAGCGCCATTCGGGTCGT
CCTCACATCTACTACGCGATCCCGACAGCGAAACTCCCGGTGATGATGTT
CGATGGATCAGTCTCTGTGCGCCAGACACAGGACGCGAATCCGGGTTTTC
AGCCCAATGATCCGACTTCAGCTGAGCCGACAGTGTTCCGCTACATGCCG
TTCAGCATCGAAGGTGACGCGGTCAATCCCGAAGGAGACGAAGTGACGGG
ATACTACAAATGGACTCGCGGCGGTCTGCGAGGCATTGATTTCGGCGGCT
CAGAAATCAACACAGGACAGATCAGTCCCTGA
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