mRNA_M-pyrifera_M_contig116561.3446.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116561.3446.1
Unique NamemRNA_M-pyrifera_M_contig116561.3446.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116561.3446.1 vs. uniprot
Match: A0A7R8X5W6_9CRUS (RCR-type E3 ubiquitin transferase n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R8X5W6_9CRUS)

HSP 1 Score: 70.9 bits (172), Expect = 5.790e-12
Identity = 41/109 (37.61%), Postives = 56/109 (51.38%), Query Frame = 1
Query:    7 DLTREIEIKVPSNEERRPMLTDGSTETFWESGIDDEDRNKEIVVTLGPSGDTAIAVAVHLDNERAADKGCSKLVLKSAPPGAEQEAVLTATPKSKYAGWAMLRIPESRH 333
            DLT   E+K  S       LTDGSTETFWESG +D+D+ K I++TL     +   V VH+DN R      S +V+KS       + V      +++ GW    IP+  H
Sbjct: 3218 DLTSSCELKCSSRPSMIGSLTDGSTETFWESGEEDKDKIKHILITLSHPNYSIQMVYVHVDNGRDIGNKVSHIVIKSGVSTDNLQKVSQQELDTRFIGWVSASIPDPGH 3326          
BLAST of mRNA_M-pyrifera_M_contig116561.3446.1 vs. uniprot
Match: UPI0018D9334E (E3 ubiquitin-protein ligase MYCBP2-like isoform X1 n=5 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D9334E)

HSP 1 Score: 65.9 bits (159), Expect = 3.290e-10
Identity = 37/104 (35.58%), Postives = 54/104 (51.92%), Query Frame = 1
Query:    7 DLTREIEIKVPSNEERRPMLTDGSTETFWESGIDDEDRNKEIVVTLGPSGDTAIAVAVHLDNERAADKGCSKLVLKSAPPGAEQEAVLTATPKSKYAGWAMLRI 318
            D+T   E++V S     P LTDGSTETFWESG +D +R K I VT    G     VAVH+DN R      + +   + P     +  L ++ ++++ GW    +
Sbjct: 2572 DVTNATELQVSSRAAMLPSLTDGSTETFWESGDEDRNRTKSITVTCN-EGLVPRMVAVHVDNSRDLGNKVTGMTFFTGPNPDSLQRTLNSSMEARHVGWVTCNL 2674          
BLAST of mRNA_M-pyrifera_M_contig116561.3446.1 vs. uniprot
Match: A0A1B6DGK3_9HEMI (DOC domain-containing protein (Fragment) n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6DGK3_9HEMI)

HSP 1 Score: 65.1 bits (157), Expect = 6.150e-10
Identity = 38/111 (34.23%), Postives = 56/111 (50.45%), Query Frame = 1
Query:    1 MVDLTREIEIKVPSNEERRPMLTDGSTETFWESGIDDEDRNKEIVVTLGPSGDTAIAVAVHLDNERAADKGCSKLVLKSAPPGAEQEAVLTATPKSKYAGWAMLRIPESRH 333
            + DL+  IEIK  S +     LTD STETFWESG +D ++ K +++T  P+  +   V +H+DN R      S +   S P   E   + T   +S+  GW    I +  H
Sbjct: 3624 LYDLSSGIEIKASSRQAMVGSLTDNSTETFWESGDEDRNKTKTLIITC-PANASPHVVYIHIDNCRDLANKVSNVTFLSGPNTEELYKIRTVEVESRATGWFNCTITDGNH 3733          
BLAST of mRNA_M-pyrifera_M_contig116561.3446.1 vs. uniprot
Match: E9H1S2_DAPPU (RCR-type E3 ubiquitin transferase n=10 Tax=Daphnia TaxID=6668 RepID=E9H1S2_DAPPU)

HSP 1 Score: 65.1 bits (157), Expect = 6.160e-10
Identity = 40/112 (35.71%), Postives = 61/112 (54.46%), Query Frame = 1
Query:    1 MVDLTREIEIKVPSNEERRPMLTDGSTETFWESGIDDEDRNKEIVVTLGPSGDTA----IAVAVHLDNERAADKGCSKLVLKSAPPGAEQEAVLTATPKSKYAGWAMLRIPE 324
            + ++T  I+IKV S       LTDGSTETFWESG  DEDR K  ++T+    +TA      V +++DN R      S +  K+ P G E + V     +++++GW    +P+
Sbjct: 3733 LTEVTEGIDIKVSSRTAMVNSLTDGSTETFWESG--DEDRGKMKLITIQVCPETAGFQPRIVCLYVDNSRDMGNKVSGVTFKAGPNGEELQIVDVLEVETRFSGWLHTSLPQ 3842          
BLAST of mRNA_M-pyrifera_M_contig116561.3446.1 vs. uniprot
Match: A0A7M7NMX2_STRPU (RCR-type E3 ubiquitin transferase n=5 Tax=Echinacea TaxID=7674 RepID=A0A7M7NMX2_STRPU)

HSP 1 Score: 63.9 bits (154), Expect = 1.560e-9
Identity = 36/99 (36.36%), Postives = 53/99 (53.54%), Query Frame = 1
Query:    7 DLTREIEIKVPSNEERRPMLTDGSTETFWESGIDDEDRNKEIVVTLGPSGDTAIAVAVHLDNERAADKGCSKLVLKSAPPGAEQEAVLTATPKSKYAGW 303
            D+T  +E++V S     P LTDGSTETFWESG +D +RNK + ++ G  G     VAVH+DN R      + +   S       + V  +   +++ GW
Sbjct: 3209 DITHSVELQVSSRAAMLPSLTDGSTETFWESGDEDRNRNKFVTIS-GNKGMNLKMVAVHVDNSRDLGNKVTSMTFLSGSSIDGLQKVQQSNLDARHTGW 3306          
BLAST of mRNA_M-pyrifera_M_contig116561.3446.1 vs. uniprot
Match: A0A2G8KP17_STIJA (Putative E3 ubiquitin-protein ligase MYCBP2 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KP17_STIJA)

HSP 1 Score: 63.5 bits (153), Expect = 2.000e-9
Identity = 39/109 (35.78%), Postives = 56/109 (51.38%), Query Frame = 1
Query:    1 MVDLTREIEIKVPSNEERRPMLTDGSTETFWESGIDDEDRNKEIVVTLG-PSGDTAIAVAVHLDNERAADKGCSKLVLKSAPPGAEQEAVLTATPKSKYAGWAMLRIPE 324
            +VD+T  IE +V S       LTDGSTETFWESG  DEDRNK  V+T+      T   +AVH+DN R      + + L +    +  + +   +   ++ GW    + E
Sbjct:  577 LVDITNSIECEVSSRSVMLGCLTDGSTETFWESG--DEDRNKPKVITIKVKDASTPSMLAVHIDNSRDLRNKVNLVTLGAGAHSSSLQKMKQVSLDMRFGGWVTFDLEE 683          
BLAST of mRNA_M-pyrifera_M_contig116561.3446.1 vs. uniprot
Match: A0A2G8JP85_STIJA (Putative E3 ubiquitin-protein ligase MYCBP2 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JP85_STIJA)

HSP 1 Score: 63.5 bits (153), Expect = 2.100e-9
Identity = 39/109 (35.78%), Postives = 56/109 (51.38%), Query Frame = 1
Query:    1 MVDLTREIEIKVPSNEERRPMLTDGSTETFWESGIDDEDRNKEIVVTLG-PSGDTAIAVAVHLDNERAADKGCSKLVLKSAPPGAEQEAVLTATPKSKYAGWAMLRIPE 324
            +VD+T  IE +V S       LTDGSTETFWESG  DEDRNK  V+T+      T   +AVH+DN R      + + L +    +  + +   +   ++ GW    + E
Sbjct: 1129 LVDITNSIECEVSSRSVMLGCLTDGSTETFWESG--DEDRNKPKVITIKVKDASTPSMLAVHIDNSRDLRNKVNLVTLGAGAHSSSLQKMKQVSLDMRFGGWVTFDLEE 1235          
BLAST of mRNA_M-pyrifera_M_contig116561.3446.1 vs. uniprot
Match: A0A8J5DU30_9CHEL (E3 ubiquitin-protein ligase MYCBP2 n=1 Tax=Nymphon striatum TaxID=424472 RepID=A0A8J5DU30_9CHEL)

HSP 1 Score: 63.2 bits (152), Expect = 2.830e-9
Identity = 36/110 (32.73%), Postives = 55/110 (50.00%), Query Frame = 1
Query:    4 VDLTREIEIKVPSNEERRPMLTDGSTETFWESGIDDEDRNKEIVVTLGPSGDTAIAVAVHLDNERAADKGCSKLVLKSAPPGAEQEAVLTATPKSKYAGWAMLRIPESRH 333
            ++LT  +EIK  S +     LTD  T+TFWESG +D ++ K +++T G        + VH+DN R   +  S +  KS     +   +L    ++KY GW    I E  H
Sbjct:  483 INLTPNVEIKTSSRQGMILNLTDQCTDTFWESGDEDRNKQKYVILTCGSQLHQPHGIYVHIDNTRDVGQKISHVCFKSGLSSDDLVKLLELDIEAKYCGWIFCPILEPGH 592          
BLAST of mRNA_M-pyrifera_M_contig116561.3446.1 vs. uniprot
Match: UPI0014430DE2 (E3 ubiquitin-protein ligase MYCBP2-like n=1 Tax=Megalopta genalis TaxID=115081 RepID=UPI0014430DE2)

HSP 1 Score: 63.2 bits (152), Expect = 2.880e-9
Identity = 38/109 (34.86%), Postives = 56/109 (51.38%), Query Frame = 1
Query:    7 DLTREIEIKVPSNEERRPMLTDGSTETFWESGIDDEDRNKEIVVTLGPSGDTAIAVAVHLDNERAADKGCSKLVLKSAPPGAEQEAVLTATPKSKYAGWAMLRIPESRH 333
            DLT  I+IK  S +     LTD STETFWESG +D ++ K I++  G      + + +H+DN R      S +  +S     E   + T   +S+ AGW    + +SRH
Sbjct: 1516 DLTPGIKIKASSRQAMIGNLTDNSTETFWESGDEDRNKTKTIIINCGAHSLPRM-IYIHIDNCRDLTHKVSSVTFQSGNNADEMVKLRTVEIESRSAGWINCPVTDSRH 1623          
BLAST of mRNA_M-pyrifera_M_contig116561.3446.1 vs. uniprot
Match: UPI001588A058 (E3 ubiquitin-protein ligase MYCBP2-like isoform X1 n=4 Tax=Chelonus insularis TaxID=460826 RepID=UPI001588A058)

HSP 1 Score: 63.2 bits (152), Expect = 2.880e-9
Identity = 40/109 (36.70%), Postives = 56/109 (51.38%), Query Frame = 1
Query:    7 DLTREIEIKVPSNEERRPMLTDGSTETFWESGIDDEDRNKEIVVTLGPSGDTAIAVAVHLDNERAADKGCSKLVLKSAPPGAEQEAVLTATPKSKYAGWAMLRIPESRH 333
            DLT  IEIK  S +     LTD STETFWESG +D ++ K IV+  G      + + VH+DN R      S +  +S     E   + T   +++ AGW    + +SRH
Sbjct: 1530 DLTPGIEIKASSRQAMIGHLTDSSTETFWESGDEDRNKTKTIVIVCGARSFPRM-IYVHIDNCRDLTHKVSSVTFQSGVNVDEMVKLRTVEIENRSAGWVNCPVIDSRH 1637          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116561.3446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R8X5W6_9CRUS5.790e-1237.61RCR-type E3 ubiquitin transferase n=1 Tax=Darwinul... [more]
UPI0018D9334E3.290e-1035.58E3 ubiquitin-protein ligase MYCBP2-like isoform X1... [more]
A0A1B6DGK3_9HEMI6.150e-1034.23DOC domain-containing protein (Fragment) n=1 Tax=C... [more]
E9H1S2_DAPPU6.160e-1035.71RCR-type E3 ubiquitin transferase n=10 Tax=Daphnia... [more]
A0A7M7NMX2_STRPU1.560e-936.36RCR-type E3 ubiquitin transferase n=5 Tax=Echinace... [more]
A0A2G8KP17_STIJA2.000e-935.78Putative E3 ubiquitin-protein ligase MYCBP2 n=1 Ta... [more]
A0A2G8JP85_STIJA2.100e-935.78Putative E3 ubiquitin-protein ligase MYCBP2 n=1 Ta... [more]
A0A8J5DU30_9CHEL2.830e-932.73E3 ubiquitin-protein ligase MYCBP2 n=1 Tax=Nymphon... [more]
UPI0014430DE22.880e-934.86E3 ubiquitin-protein ligase MYCBP2-like n=1 Tax=Me... [more]
UPI001588A0582.880e-936.70E3 ubiquitin-protein ligase MYCBP2-like isoform X1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116561contigM-pyrifera_M_contig116561:11..343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score70.5
Seed ortholog evalue5.7e-10
Seed eggNOG ortholog121225.PHUM483780-PA
KEGG koko:K10693
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGs38HTC@33154,3BGA4@33208,3CT3Q@33213,3E9J0@33342,3SFX7@50557,41WKJ@6656,KOG1428@1,KOG1428@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelParaneoptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons1
Model size333
Cds size333
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815683.282949-CDS-M-pyrifera_M_contig116561:10..3431622815683.282949-CDS-M-pyrifera_M_contig116561:10..343Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116561 11..343 -
1692277520.143214-CDS-M-pyrifera_M_contig116561:10..3431692277520.143214-CDS-M-pyrifera_M_contig116561:10..343Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116561 11..343 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116561.3446.1prot_M-pyrifera_M_contig116561.3446.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116561 11..343 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116561.3446.1

>prot_M-pyrifera_M_contig116561.3446.1 ID=prot_M-pyrifera_M_contig116561.3446.1|Name=mRNA_M-pyrifera_M_contig116561.3446.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
MVDLTREIEIKVPSNEERRPMLTDGSTETFWESGIDDEDRNKEIVVTLGP
SGDTAIAVAVHLDNERAADKGCSKLVLKSAPPGAEQEAVLTATPKSKYAG
WAMLRIPESRH
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mRNA from alignment at M-pyrifera_M_contig116561:11..343-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116561.3446.1 ID=mRNA_M-pyrifera_M_contig116561.3446.1|Name=mRNA_M-pyrifera_M_contig116561.3446.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=333bp|location=Sequence derived from alignment at M-pyrifera_M_contig116561:11..343- (Macrocystis pyrifera P11B4 male)
ATGGTGGACTTGACGAGGGAAATTGAAATCAAGGTACCAAGCAATGAAGA ACGGCGTCCAATGTTGACAGATGGTTCAACTGAAACGTTCTGGGAAAGTG GGATTGATGATGAAGATAGAAACAAGGAGATTGTGGTCACCCTTGGACCA TCTGGAGATACTGCAATTGCTGTTGCTGTTCATTTAGATAATGAGCGTGC AGCTGACAAGGGTTGCAGTAAACTTGTGCTGAAATCAGCTCCACCTGGTG CTGAGCAAGAAGCTGTACTTACTGCTACACCGAAATCAAAATATGCTGGT TGGGCAATGTTGCGGATTCCAGAGTCGCGCCAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116561:11..343-

>mRNA_M-pyrifera_M_contig116561.3446.1 ID=mRNA_M-pyrifera_M_contig116561.3446.1|Name=mRNA_M-pyrifera_M_contig116561.3446.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig116561:11..343- (Macrocystis pyrifera P11B4 male)
ATGGTGGACTTGACGAGGGAAATTGAAATCAAGGTACCAAGCAATGAAGA
ACGGCGTCCAATGTTGACAGATGGTTCAACTGAAACGTTCTGGGAAAGTG
GGATTGATGATGAAGATAGAAACAAGGAGATTGTGGTCACCCTTGGACCA
TCTGGAGATACTGCAATTGCTGTTGCTGTTCATTTAGATAATGAGCGTGC
AGCTGACAAGGGTTGCAGTAAACTTGTGCTGAAATCAGCTCCACCTGGTG
CTGAGCAAGAAGCTGTACTTACTGCTACACCGAAATCAAAATATGCTGGT
TGGGCAATGTTGCGGATTCCAGAGTCGCGCCATATGGTGGACTTGACGAG
GGAAATTGAAATCAAGGTACCAAGCAATGAAGAACGGCGTCCAATGTTGA
CAGATGGTTCAACTGAAACGTTCTGGGAAAGTGGGATTGATGATGAAGAT
AGAAACAAGGAGATTGTGGTCACCCTTGGACCATCTGGAGATACTGCAAT
TGCTGTTGCTGTTCATTTAGATAATGAGCGTGCAGCTGACAAGGGTTGCA
GTAAACTTGTGCTGAAATCAGCTCCACCTGGTGCTGAGCAAGAAGCTGTA
CTTACTGCTACACCGAAATCAAAATATGCTGGTTGGGCAATGTTGCGGAT
TCCAGAGTCGCGCCAT
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