mRNA_M-pyrifera_M_contig116534.3436.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116534.3436.1
Unique NamemRNA_M-pyrifera_M_contig116534.3436.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig116534.3436.1 vs. uniprot
Match: UPI0008F47AFF (serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like n=1 Tax=Parus major TaxID=9157 RepID=UPI0008F47AFF)

HSP 1 Score: 75.5 bits (184), Expect = 1.080e-16
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 DDSLQPVRILIDELKSDDVQVRLTSIRGLTTIATALGPERTRNELLPFLKGTTRS 165
            DDSL P+ +LIDEL+++DVQ+RL SI+ L+TIA ALG ERTR+ELLPFL GT R+
Sbjct:    7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTGTWRA 61
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BLAST of mRNA_M-pyrifera_M_contig116534.3436.1 vs. uniprot
Match: A0A4W2BU60_BOBOX (Uncharacterized protein n=1 Tax=Bos indicus x Bos taurus TaxID=30522 RepID=A0A4W2BU60_BOBOX)

HSP 1 Score: 75.5 bits (184), Expect = 1.110e-16
Identity = 37/55 (67.27%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    1 DDSLQPVRILIDELKSDDVQVRLTSIRGLTTIATALGPERTRNELLPFLKGTTRS 165
            DDSL P+ +LIDEL+++DVQ+RL SI+ L+TIA ALG ERTR+ELLPFL GT  S
Sbjct:    7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTGTVES 61
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BLAST of mRNA_M-pyrifera_M_contig116534.3436.1 vs. uniprot
Match: A0A7R9QZ11_9ACAR (Hypothetical protein n=1 Tax=Oppiella nova TaxID=334625 RepID=A0A7R9QZ11_9ACAR)

HSP 1 Score: 72.8 bits (177), Expect = 1.020e-15
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 DDSLQPVRILIDELKSDDVQVRLTSIRGLTTIATALGPERTRNELLPFLKGT 156
            DDSL P+ +LIDEL++DDVQ+RL SIR L+TIA ALG ERTR EL+PFL  T
Sbjct:   18 DDSLYPIAVLIDELRNDDVQLRLNSIRKLSTIALALGVERTRTELIPFLTDT 69
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BLAST of mRNA_M-pyrifera_M_contig116534.3436.1 vs. uniprot
Match: A0A7K9P9N7_9CORV (2AAA phosphatase (Fragment) n=3 Tax=Passeriformes TaxID=9126 RepID=A0A7K9P9N7_9CORV)

HSP 1 Score: 73.9 bits (180), Expect = 3.000e-15
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    1 DDSLQPVRILIDELKSDDVQVRLTSIRGLTTIATALGPERTRNELLPFLKGT 156
            DDSL P+ +LIDEL+++DVQ+RL SI+ L+TIA ALG ERTR+ELLPFL GT
Sbjct:    7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTGT 58
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BLAST of mRNA_M-pyrifera_M_contig116534.3436.1 vs. uniprot
Match: A0A7N5KB79_AILME (Uncharacterized protein n=2 Tax=Amniota TaxID=32524 RepID=A0A7N5KB79_AILME)

HSP 1 Score: 71.2 bits (173), Expect = 5.990e-15
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 DDSLQPVRILIDELKSDDVQVRLTSIRGLTTIATALGPERTRNELLPFLKGT 156
            DDSL P+ +LIDEL+++DVQ+RL SI+ L+TIA ALG ERTR+ELLPFL  T
Sbjct:    7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58
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BLAST of mRNA_M-pyrifera_M_contig116534.3436.1 vs. uniprot
Match: G3UXQ1_MOUSE (Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform n=4 Tax=Amniota TaxID=32524 RepID=G3UXQ1_MOUSE)

HSP 1 Score: 71.2 bits (173), Expect = 6.140e-15
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 DDSLQPVRILIDELKSDDVQVRLTSIRGLTTIATALGPERTRNELLPFLKGT 156
            DDSL P+ +LIDEL+++DVQ+RL SI+ L+TIA ALG ERTR+ELLPFL  T
Sbjct:    7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58
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BLAST of mRNA_M-pyrifera_M_contig116534.3436.1 vs. uniprot
Match: A0A8C3CGA0_CAIMO (Uncharacterized protein n=1 Tax=Cairina moschata domestica TaxID=1240228 RepID=A0A8C3CGA0_CAIMO)

HSP 1 Score: 70.1 bits (170), Expect = 9.760e-15
Identity = 34/49 (69.39%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 DDSLQPVRILIDELKSDDVQVRLTSIRGLTTIATALGPERTRNELLPFL 147
            DDSL P+ +LIDEL+++DVQ+RL SI+ L+TIA ALG ERTR+ELLPFL
Sbjct:    7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFL 55
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BLAST of mRNA_M-pyrifera_M_contig116534.3436.1 vs. uniprot
Match: A0A2H1BWB6_FASHE (HEAT repeat protein n=1 Tax=Fasciola hepatica TaxID=6192 RepID=A0A2H1BWB6_FASHE)

HSP 1 Score: 72.4 bits (176), Expect = 1.070e-14
Identity = 34/49 (69.39%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 DDSLQPVRILIDELKSDDVQVRLTSIRGLTTIATALGPERTRNELLPFL 147
            D+SL P+ ILIDEL++D++Q RL S++ LTTIA ALGPERTRNEL+PFL
Sbjct:    7 DESLFPIAILIDELRNDEMQTRLASVKKLTTIALALGPERTRNELIPFL 55
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BLAST of mRNA_M-pyrifera_M_contig116534.3436.1 vs. uniprot
Match: UPI0009E27C12 (serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E27C12)

HSP 1 Score: 70.5 bits (171), Expect = 1.240e-14
Identity = 34/52 (65.38%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 DDSLQPVRILIDELKSDDVQVRLTSIRGLTTIATALGPERTRNELLPFLKGT 156
            DDSL P+ +LIDEL+++DVQ+RL SI+ L+TIA ALG ERTR+EL+PFL  T
Sbjct:    7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELIPFLTDT 58
[Close]
BLAST of mRNA_M-pyrifera_M_contig116534.3436.1 vs. uniprot
Match: E9PPI5_HUMAN (Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform n=6 Tax=Catarrhini TaxID=9526 RepID=E9PPI5_HUMAN)

HSP 1 Score: 70.1 bits (170), Expect = 1.550e-14
Identity = 34/49 (69.39%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 DDSLQPVRILIDELKSDDVQVRLTSIRGLTTIATALGPERTRNELLPFL 147
            DDSL P+ +LIDEL+++DVQ+RL SI+ L+TIA ALG ERTR+ELLPFL
Sbjct:   19 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFL 67
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116534.3436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0008F47AFF1.080e-1667.27serine/threonine-protein phosphatase 2A 65 kDa reg... [more]
A0A4W2BU60_BOBOX1.110e-1667.27Uncharacterized protein n=1 Tax=Bos indicus x Bos ... [more]
A0A7R9QZ11_9ACAR1.020e-1569.23Hypothetical protein n=1 Tax=Oppiella nova TaxID=3... [more]
A0A7K9P9N7_9CORV3.000e-1569.232AAA phosphatase (Fragment) n=3 Tax=Passeriformes ... [more]
A0A7N5KB79_AILME5.990e-1567.31Uncharacterized protein n=2 Tax=Amniota TaxID=3252... [more]
G3UXQ1_MOUSE6.140e-1567.31Serine/threonine-protein phosphatase 2A 65 kDa reg... [more]
A0A8C3CGA0_CAIMO9.760e-1569.39Uncharacterized protein n=1 Tax=Cairina moschata d... [more]
A0A2H1BWB6_FASHE1.070e-1469.39HEAT repeat protein n=1 Tax=Fasciola hepatica TaxI... [more]
UPI0009E27C121.240e-1465.38serine/threonine-protein phosphatase 2A 65 kDa reg... [more]
E9PPI5_HUMAN1.550e-1469.39Serine/threonine-protein phosphatase 2A 65 kDa reg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116534contigM-pyrifera_M_contig116534:295..459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue1.5e-11
Seed eggNOG ortholog2903.EOD24969
Preferred nameKIAA1468
KEGG koko:K03456,ko:K15424
KEGG Pathwayko03015,ko04071,ko04111,ko04113,ko04114,ko04151,ko04152,ko04261,ko04350,ko04390,ko04391,ko04530,ko04728,ko04730,ko05142,ko05160,ko05165,map03015,map04071,map04111,map04113,map04114,map04151,map04152,map04261,map04350,map04390,map04391,map04530,map04728,map04730,map05142,map05160,map05165
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0006810,GO:0006869,GO:0008150,GO:0010876,GO:0012505,GO:0015850,GO:0015918,GO:0030301,GO:0031410,GO:0031982,GO:0032365,GO:0032366,GO:0032367,GO:0033036,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055037,GO:0071702,GO:0097708
EggNOG free text desc.meiotic spindle elongation
EggNOG OGsKOG0211@1,KOG0211@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko03400
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815682.7438838-CDS-M-pyrifera_M_contig116534:294..4591622815682.7438838-CDS-M-pyrifera_M_contig116534:294..459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116534 295..459 +
1692277519.8127027-CDS-M-pyrifera_M_contig116534:294..4591692277519.8127027-CDS-M-pyrifera_M_contig116534:294..459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116534 295..459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116534.3436.1prot_M-pyrifera_M_contig116534.3436.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116534 295..459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116534.3436.1

>prot_M-pyrifera_M_contig116534.3436.1 ID=prot_M-pyrifera_M_contig116534.3436.1|Name=mRNA_M-pyrifera_M_contig116534.3436.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
DDSLQPVRILIDELKSDDVQVRLTSIRGLTTIATALGPERTRNELLPFLK
GTTRS
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mRNA from alignment at M-pyrifera_M_contig116534:295..459+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116534.3436.1 ID=mRNA_M-pyrifera_M_contig116534.3436.1|Name=mRNA_M-pyrifera_M_contig116534.3436.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=165bp|location=Sequence derived from alignment at M-pyrifera_M_contig116534:295..459+ (Macrocystis pyrifera P11B4 male)
GATGATTCTCTGCAACCTGTTCGCATCTTGATCGATGAGCTCAAGAGCGA
CGACGTTCAGGTTCGATTGACTTCCATTCGCGGCCTGACGACGATTGCAA
CTGCTCTTGGGCCAGAGAGGACCAGGAACGAGCTTCTGCCCTTCCTCAAG
GGTACGACGCGCAGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116534:295..459+

>mRNA_M-pyrifera_M_contig116534.3436.1 ID=mRNA_M-pyrifera_M_contig116534.3436.1|Name=mRNA_M-pyrifera_M_contig116534.3436.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig116534:295..459+ (Macrocystis pyrifera P11B4 male)
GATGATTCTCTGCAACCTGTTCGCATCTTGATCGATGAGCTCAAGAGCGA
CGACGTTCAGGTTCGATTGACTTCCATTCGCGGCCTGACGACGATTGCAA
CTGCTCTTGGGCCAGAGAGGACCAGGAACGAGCTTCTGCCCTTCCTCAAG
GGTACGACGCGCAGCGATGATTCTCTGCAACCTGTTCGCATCTTGATCGA
TGAGCTCAAGAGCGACGACGTTCAGGTTCGATTGACTTCCATTCGCGGCC
TGACGACGATTGCAACTGCTCTTGGGCCAGAGAGGACCAGGAACGAGCTT
CTGCCCTTCCTCAAGGGTACGACGCGCAGC
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