mRNA_M-pyrifera_M_contig116529.3433.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116529.3433.1
Unique NamemRNA_M-pyrifera_M_contig116529.3433.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig116529.3433.1 vs. uniprot
Match: A0A813F1X8_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813F1X8_POLGL)

HSP 1 Score: 57.0 bits (136), Expect = 3.290e-8
Identity = 27/43 (62.79%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:   22 KDILESDAAFRASFDRSSTTYHGGSTEPVPLGGCRVPDGAKTA 150
            KD+ ES A F   FDR S T+HGG TEPVPLGG RVP+  K A
Sbjct:   32 KDLAESGADFADQFDRDSATFHGGITEPVPLGGARVPESMKNA 74
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BLAST of mRNA_M-pyrifera_M_contig116529.3433.1 vs. uniprot
Match: A0A7S4PXM3_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4PXM3_9DINO)

HSP 1 Score: 51.6 bits (122), Expect = 2.730e-6
Identity = 23/36 (63.89%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:   28 ILESDAAFRASFDRSSTTYHGGSTEPVPLGGCRVPD 135
            ++ESDAAFR  FDRSS  +HGG   PVP GG RVP+
Sbjct:   10 LIESDAAFREQFDRSSPNFHGGVDVPVPTGGARVPE 45
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116529.3433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A813F1X8_POLGL3.290e-862.79Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S4PXM3_9DINO2.730e-663.89Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116529contigM-pyrifera_M_contig116529:388..552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815682.6242964-CDS-M-pyrifera_M_contig116529:387..5521622815682.6242964-CDS-M-pyrifera_M_contig116529:387..552Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116529 388..552 -
1692277519.7700253-CDS-M-pyrifera_M_contig116529:387..5521692277519.7700253-CDS-M-pyrifera_M_contig116529:387..552Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116529 388..552 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116529.3433.1prot_M-pyrifera_M_contig116529.3433.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116529 388..552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116529.3433.1

>prot_M-pyrifera_M_contig116529.3433.1 ID=prot_M-pyrifera_M_contig116529.3433.1|Name=mRNA_M-pyrifera_M_contig116529.3433.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
MATHDLEKDILESDAAFRASFDRSSTTYHGGSTEPVPLGGCRVPDGAKTA
PSERD
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mRNA from alignment at M-pyrifera_M_contig116529:388..552-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116529.3433.1 ID=mRNA_M-pyrifera_M_contig116529.3433.1|Name=mRNA_M-pyrifera_M_contig116529.3433.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=165bp|location=Sequence derived from alignment at M-pyrifera_M_contig116529:388..552- (Macrocystis pyrifera P11B4 male)
ATGGCAACACATGATCTGGAGAAAGACATCCTGGAGAGCGATGCAGCGTT
CCGGGCGTCGTTTGACCGTTCCAGCACCACCTACCACGGCGGCAGCACAG
AGCCCGTCCCCCTCGGCGGATGCAGGGTCCCCGATGGAGCAAAGACTGCA
CCGAGTGAGCGAGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116529:388..552-

>mRNA_M-pyrifera_M_contig116529.3433.1 ID=mRNA_M-pyrifera_M_contig116529.3433.1|Name=mRNA_M-pyrifera_M_contig116529.3433.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig116529:388..552- (Macrocystis pyrifera P11B4 male)
ATGGCAACACATGATCTGGAGAAAGACATCCTGGAGAGCGATGCAGCGTT
CCGGGCGTCGTTTGACCGTTCCAGCACCACCTACCACGGCGGCAGCACAG
AGCCCGTCCCCCTCGGCGGATGCAGGGTCCCCGATGGAGCAAAGACTGCA
CCGAGTGAGCGAGATATGGCAACACATGATCTGGAGAAAGACATCCTGGA
GAGCGATGCAGCGTTCCGGGCGTCGTTTGACCGTTCCAGCACCACCTACC
ACGGCGGCAGCACAGAGCCCGTCCCCCTCGGCGGATGCAGGGTCCCCGAT
GGAGCAAAGACTGCACCGAGTGAGCGAGAT
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