mRNA_M-pyrifera_M_contig116511.3429.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116511.3429.1
Unique NamemRNA_M-pyrifera_M_contig116511.3429.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116511.3429.1 vs. uniprot
Match: A0A5A8EN73_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EN73_CAFRO)

HSP 1 Score: 82.0 bits (201), Expect = 4.330e-15
Identity = 58/152 (38.16%), Postives = 86/152 (56.58%), Query Frame = 1
Query:   46 PFVNRTRKLSVPRRALMAVCASLFFLPRLLLFVTSLVCYALLS--AALDAGTDPTKPLPASRVRILALIGTP---LRRVVFFALGFLHITVKGEAAPREVAPVLIGNHTTFADALLLH-FHASGGVSKAENARIPLVGAMARATRCIFVDRA 483
            PF+N+T  LS  R   + +        RL L V ++   A+ S  A++    +  +  P S VR    + +P   L R   F LG+  I +KG AAPR+ APVLI NHT+F D L +  FHA+  VS+AENA +P++G + +A + +FV+RA
Sbjct:   21 PFINQTPPLSGIRACTLGITGLTLLPVRLSLSVVNIGLIAVFSNLASMFLTPEDLERDPLSTVR--RAVRSPIWYLMRFQLFLLGYHWIDIKGRAAPRKEAPVLIANHTSFVDPLYMATFHAAAPVSRAENATMPVIGGIIKAFQTLFVNRA 170          
BLAST of mRNA_M-pyrifera_M_contig116511.3429.1 vs. uniprot
Match: A0A5A8DMG0_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DMG0_CAFRO)

HSP 1 Score: 82.0 bits (201), Expect = 5.020e-15
Identity = 58/152 (38.16%), Postives = 86/152 (56.58%), Query Frame = 1
Query:   46 PFVNRTRKLSVPRRALMAVCASLFFLPRLLLFVTSLVCYALLS--AALDAGTDPTKPLPASRVRILALIGTP---LRRVVFFALGFLHITVKGEAAPREVAPVLIGNHTTFADALLLH-FHASGGVSKAENARIPLVGAMARATRCIFVDRA 483
            PF+N+T  LS  R   + +        RL L V ++   A+ S  A++    +  +  P S VR    + +P   L R   F LG+  I +KG AAPR+ APVLI NHT+F D L +  FHA+  VS+AENA +P++G + +A + +FV+RA
Sbjct:  894 PFINQTPPLSGIRACTLGITGLTLLPVRLSLSVVNIGLIAVFSNLASMFLTPEDLERDPLSTVR--RAVRSPIWYLMRFQLFLLGYHWIDIKGRAAPRKEAPVLIANHTSFVDPLYMATFHAAAPVSRAENATMPVIGGIIKAFQTLFVNRA 1043          
BLAST of mRNA_M-pyrifera_M_contig116511.3429.1 vs. uniprot
Match: A0A7S1IZP3_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IZP3_9EUGL)

HSP 1 Score: 70.5 bits (171), Expect = 4.570e-11
Identity = 58/169 (34.32%), Postives = 85/169 (50.30%), Query Frame = 1
Query:   10 SLYDQLRFSGL-RPFVNRTRKLSVPRRALMAVCASLFFLPRLLLFVTSLVCYALLSAALDAGTDPTKPLPASRVRILALI-GTPLR---RVVFFALGFLHITVKGEAAPREVAPVLIGNHTTFADALL-LHFHASGGVSKAENARIPLVGAMARATRCIFVDRASVDSR 498
            S++D++R S +  PFVN T  L++  R  M+V A      RL+L + +L   +L          P+     SR     L+   P+R   R V   LG+  I VKG+      AP+L+ NH T  DAL+ L+    G V++  N R P++G M R   C+ VDR + DSR
Sbjct:  107 SVFDKVRESSVPNPFVNSTWYLTLYERLKMSVFAVTLMPIRLVLLLITLPIVSLWCRLWLLFLAPS-----SRSCFAGLVLRLPVRLGCRFVLHCLGYYWIPVKGKRVAPTEAPILVANHCTMVDALMMLYLQLPGPVAEERNLRNPILGPMLRVIECVTVDRTNKDSR 270          
BLAST of mRNA_M-pyrifera_M_contig116511.3429.1 vs. uniprot
Match: A0A1Y1IUS3_KLENI (1-Acylglycerol-3-Phosphoethanolamine Acyltransferase 2 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IUS3_KLENI)

HSP 1 Score: 69.3 bits (168), Expect = 1.120e-10
Identity = 54/162 (33.33%), Postives = 84/162 (51.85%), Query Frame = 1
Query:   34 SGLRPFVNRTRKLSVPRRALMAVCASLFFLPRLLLFVTSLVCYALLSAA-----LDAGTDPTKPLPASRVRILALIGTPL-RRVVFFALGFLHITVKGEAAPREVAPVLIGNHTTFADALLLHFHASGG-VSKAENARIPLVGAMARATRCIFVDRASVDSR 498
            S + PF  +T    V    L  +  ++  LP +L+ V  ++   LL  +     L    D  +P P  R ++L   GT L  R V F LG+  I  KGE APREVAP+++GNH +F + +   F      VS  ++  +P++G + +A + I VDR+S +SR
Sbjct:   44 STIDPFTAQT----VHPEGLYEILKTIVMLPIVLIRVVFILLSLLLGYSWALLVLTGVKDTKQPYPKWRGKLL--YGTRLCARGVLFGLGYHWIPTKGELAPREVAPIVVGNHMSFTEPVFFFFRLLPAIVSAKQHESMPIIGTIIKAMQTISVDRSSSESR 199          
BLAST of mRNA_M-pyrifera_M_contig116511.3429.1 vs. uniprot
Match: A0A5B6ZLI9_DAVIN (Putative lysophospholipid acyltransferase LPEAT2 isoform X2 n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B6ZLI9_DAVIN)

HSP 1 Score: 66.2 bits (160), Expect = 1.320e-9
Identity = 49/153 (32.03%), Postives = 75/153 (49.02%), Query Frame = 1
Query:   46 PFVNRTRKLSVPRRALMAVCASLFFLPRLLLF-VTSLVCYALLSAALDAGTDPTKPLPASRVRILALIGTPLRRVVFFALGFLHITVKGEAAPREVAPVLIGNHTTFADALLLHFHASGGVSKAENA-RIPLVGAMARATRCIFVDRASVDSR 498
            PF N T ++      L  V      L RL+LF +  LV Y     AL    D   P+P  R RIL  +     R + F+ G+  I  +G  A RE+AP+++ NHT++ + +   +     +  +E+   IP VG + RA + I+V+R S  SR
Sbjct:   86 PFRNHTPRIEGVYEWLKIVICVPIALVRLVLFGLCLLVGYVATKLALQGWKDKQNPMPKWRCRIL-WVTRICSRCILFSFGYHWIKRRGRPAQREIAPIVVSNHTSYIEPIFFFYELFPTIVASESHDSIPFVGTIIRAMQVIYVNRFSPSSR 237          
BLAST of mRNA_M-pyrifera_M_contig116511.3429.1 vs. uniprot
Match: A0A835WLV2_9CHLO (PlsC domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WLV2_9CHLO)

HSP 1 Score: 63.2 bits (152), Expect = 1.550e-8
Identity = 58/160 (36.25%), Postives = 81/160 (50.62%), Query Frame = 1
Query:   46 PFVNRTRKLSVPRRALMAVCASLFFLP----RLLLFVTSLVCYALLSAALDAGTDPTKPLPASRVRILALIGTPLRRVVFFALGFLHITVKGE----AAPREVAPVLIGNHTTFADA-LLLHFHASGGVSKAENARIPLVGAMARATRCIFVDRASVDSR 498
            PFV    +L  P  A  AV   L  LP    RL L   +LV  A++++A   G  P +PLPA R R + L    L  VV +A+GF      G     A    +  V + NH ++ADA LL+   A  GVSKA+NAR+P++G   RA + +F+    +  R
Sbjct:    7 PFV----ELGCPFTAYEAV-KMLLLLPWVPLRLCLGGAALVAMAVINSAAAWGVPPDQPLPAWR-RSVVLASKELVGVVLWAMGFRVRLAPGSRQQLAEALRLRAVGVFNHVSWADAFLLVWLMAPSGVSKADNARLPVIGTAIRAMQTVFIPYEKLSGR 160          
BLAST of mRNA_M-pyrifera_M_contig116511.3429.1 vs. uniprot
Match: A0A2K3DBU6_CHLRE (PlsC domain-containing protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DBU6_CHLRE)

HSP 1 Score: 61.2 bits (147), Expect = 7.190e-8
Identity = 45/120 (37.50%), Postives = 70/120 (58.33%), Query Frame = 1
Query:  127 RLLLFVTSLVCYALLSAALDAGTDPTKPLPASRVRILALIGTPLRRVVFFALGFLHITVKGEAAPRE---VAPVLIGNHTTFADA-LLLHFHASGGVSKAENARIPLVGAMARATRCIFV 474
            RL L   +LV  A++++A   G  P +PLPA R R + L    L  VV +ALGF  + V G    ++   +  V + NH ++ DA LL+   A  GVSKA+NA++P++G+  RA + +F+
Sbjct:   33 RLCLGGAALVALAVINSAAAWGVPPDQPLPAWR-RNVVLASKELVGVVLWALGF-RVRVAGRRHLQQALQLGAVGVFNHASWVDAFLLVWLMAPSGVSKADNAQLPVIGSAVRALQTVFI 150          
BLAST of mRNA_M-pyrifera_M_contig116511.3429.1 vs. uniprot
Match: A0A2I4CBB3_9TELE (lysophospholipid acyltransferase LPCAT4 n=2 Tax=Austrofundulus limnaeus TaxID=52670 RepID=A0A2I4CBB3_9TELE)

HSP 1 Score: 60.1 bits (144), Expect = 1.740e-7
Identity = 52/159 (32.70%), Postives = 80/159 (50.31%), Query Frame = 1
Query:   46 PFVNRTRKLSVPRRALMAVCASLFFLPRLLLFVTSLVCY------ALLSAALDAGTDPTKPLPASRVRILALIGTPLRRVVFFALGFLHITVKGEAAPREVAPVLI-GNHTTFADALLL-HFHASGGVSKAENARIPLVGAMARATRCIFVDRASVDSR 498
            PF+    KL+ P+R    +  S+    RL L V   +C+      ALL  A  +  + ++P+   R      I   L R VFF LGFL + VKG  A  + APVL+   H+ F D L+L     +  VS++EN ++P++GA+    + + V R   +SR
Sbjct:    9 PFIYEV-KLTTPQRIRGIILGSILVPLRLTLAV---ICFLIMWPVALLRVAGLSKEERSRPITGWRHWFYHPIMLNLSRAVFFFLGFLWVRVKGRRADLKEAPVLVVAPHSGFLDMLVLCPTQLATVVSRSENTKLPVIGALLEFNQSVIVSRKDPESR 163          
BLAST of mRNA_M-pyrifera_M_contig116511.3429.1 vs. uniprot
Match: UPI001C05D520 (lysophospholipid acyltransferase LPCAT4 n=1 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C05D520)

HSP 1 Score: 60.1 bits (144), Expect = 1.750e-7
Identity = 49/156 (31.41%), Postives = 81/156 (51.92%), Query Frame = 1
Query:   46 PFVNRTRKLSVPRRALMAVCASLFFLPRLL---LFVTSLVCYALLSAALDAGTDPTKPLPASRVRILALIGTPLRRVVFFALGFLHITVKGEAAPREVAPVLI-GNHTTFADALLL-HFHASGGVSKAENARIPLVGAMARATRCIFVDRASVDSR 498
            PF++   KL+  +R    +  S+ F  R+    LF   +   A L  A  +  + ++P+   R  +   +   L R VFF+LGFL + VKG  A  + APVL+   H+TF D L+L     +  VS++EN ++P++GA+    + + V R   +SR
Sbjct:    9 PFIHEV-KLTAAQRVRGIILGSILFPLRITFTALFFLLMWPLARLRLAGLSAEERSRPVTGWRRWLFHPVILFLSRAVFFSLGFLWVKVKGRRADLKEAPVLVVAPHSTFLDMLVLCPTQLATVVSRSENTKLPVIGALLEFNQSVLVSRKDPESR 163          
BLAST of mRNA_M-pyrifera_M_contig116511.3429.1 vs. uniprot
Match: A0A3Q3QGJ6_MONAL (Lysophosphatidylcholine acyltransferase 4 n=3 Tax=Monopterus albus TaxID=43700 RepID=A0A3Q3QGJ6_MONAL)

HSP 1 Score: 59.7 bits (143), Expect = 2.340e-7
Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 1
Query:  256 LRRVVFFALGFLHITVKGEAAPREVAPVLI-GNHTTFADALLL-HFHASGGVSKAENARIPLVGAMARATRCIFVDRASVDSR 498
            L R VFF++GFL + VKG  A  + APVL+   H++F D L+L     +  VS++EN R+P++GA+    + + V R   DSR
Sbjct:   88 LSRAVFFSMGFLWVKVKGRRADLKEAPVLVVAPHSSFLDLLVLCPTQLATVVSRSENTRLPIIGALLEFNQSVLVSRKDPDSR 170          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116511.3429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8EN73_CAFRO4.330e-1538.16Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A5A8DMG0_CAFRO5.020e-1538.16Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
A0A7S1IZP3_9EUGL4.570e-1134.32Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A1Y1IUS3_KLENI1.120e-1033.331-Acylglycerol-3-Phosphoethanolamine Acyltransfera... [more]
A0A5B6ZLI9_DAVIN1.320e-932.03Putative lysophospholipid acyltransferase LPEAT2 i... [more]
A0A835WLV2_9CHLO1.550e-836.25PlsC domain-containing protein n=1 Tax=Chlamydomon... [more]
A0A2K3DBU6_CHLRE7.190e-837.50PlsC domain-containing protein n=1 Tax=Chlamydomon... [more]
A0A2I4CBB3_9TELE1.740e-732.70lysophospholipid acyltransferase LPCAT4 n=2 Tax=Au... [more]
UPI001C05D5201.750e-731.41lysophospholipid acyltransferase LPCAT4 n=1 Tax=Me... [more]
A0A3Q3QGJ6_MONAL2.340e-740.96Lysophosphatidylcholine acyltransferase 4 n=3 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116511contigM-pyrifera_M_contig116511:44..550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score79.7
Seed ortholog evalue1.4e-12
Seed eggNOG ortholog88036.EFJ13946
KEGG rclassRC00004,RC00037
KEGG koko:K13510
KEGG ReactionR01318,R03437,R03438,R09036
KEGG Pathwayko00564,ko00565,ko01100,map00564,map00565,map01100
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Phosphate acyltransferases
EggNOG OGs37X1Z@33090,3GN9B@35493,COG0204@1,KOG4666@2759
EC2.3.1.23,2.3.1.67
COG Functional cat.I
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004
Exons1
Model size507
Cds size507
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815682.4353616-CDS-M-pyrifera_M_contig116511:43..5501622815682.4353616-CDS-M-pyrifera_M_contig116511:43..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116511 44..550 +
1692277519.6774912-CDS-M-pyrifera_M_contig116511:43..5501692277519.6774912-CDS-M-pyrifera_M_contig116511:43..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116511 44..550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116511.3429.1prot_M-pyrifera_M_contig116511.3429.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116511 44..550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116511.3429.1

>prot_M-pyrifera_M_contig116511.3429.1 ID=prot_M-pyrifera_M_contig116511.3429.1|Name=mRNA_M-pyrifera_M_contig116511.3429.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=169bp
RTLSLYDQLRFSGLRPFVNRTRKLSVPRRALMAVCASLFFLPRLLLFVTS
LVCYALLSAALDAGTDPTKPLPASRVRILALIGTPLRRVVFFALGFLHIT
VKGEAAPREVAPVLIGNHTTFADALLLHFHASGGVSKAENARIPLVGAMA
RATRCIFVDRASVDSRAAT
back to top

mRNA from alignment at M-pyrifera_M_contig116511:44..550+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116511.3429.1 ID=mRNA_M-pyrifera_M_contig116511.3429.1|Name=mRNA_M-pyrifera_M_contig116511.3429.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=507bp|location=Sequence derived from alignment at M-pyrifera_M_contig116511:44..550+ (Macrocystis pyrifera P11B4 male)
CGCACGCTGTCGCTGTACGACCAGCTTCGCTTCAGCGGGCTGCGCCCGTT CGTGAACCGAACAAGGAAGCTGTCTGTCCCCAGACGCGCGCTCATGGCCG TCTGCGCCTCCCTCTTCTTCCTGCCTCGCCTCCTCCTCTTTGTCACGTCG CTCGTCTGCTACGCGCTGCTCAGCGCCGCCCTGGACGCCGGCACCGACCC CACCAAGCCCCTGCCTGCGAGCCGCGTGCGTATTCTCGCCCTCATCGGCA CCCCGCTGCGACGAGTCGTGTTCTTCGCGCTCGGCTTCCTCCACATCACC GTCAAGGGAGAGGCAGCCCCGCGGGAAGTGGCGCCCGTCCTCATCGGCAA CCACACCACGTTTGCAGACGCCCTCCTCCTCCACTTTCACGCCTCTGGCG GCGTCAGCAAGGCAGAGAACGCCCGTATCCCGCTTGTTGGCGCCATGGCG CGCGCGACGCGCTGCATCTTCGTCGACCGCGCGTCCGTCGATTCCAGGGC CGCCACG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig116511:44..550+

>mRNA_M-pyrifera_M_contig116511.3429.1 ID=mRNA_M-pyrifera_M_contig116511.3429.1|Name=mRNA_M-pyrifera_M_contig116511.3429.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1014bp|location=Sequence derived from alignment at M-pyrifera_M_contig116511:44..550+ (Macrocystis pyrifera P11B4 male)
CGCACGCTGTCGCTGTACGACCAGCTTCGCTTCAGCGGGCTGCGCCCGTT
CGTGAACCGAACAAGGAAGCTGTCTGTCCCCAGACGCGCGCTCATGGCCG
TCTGCGCCTCCCTCTTCTTCCTGCCTCGCCTCCTCCTCTTTGTCACGTCG
CTCGTCTGCTACGCGCTGCTCAGCGCCGCCCTGGACGCCGGCACCGACCC
CACCAAGCCCCTGCCTGCGAGCCGCGTGCGTATTCTCGCCCTCATCGGCA
CCCCGCTGCGACGAGTCGTGTTCTTCGCGCTCGGCTTCCTCCACATCACC
GTCAAGGGAGAGGCAGCCCCGCGGGAAGTGGCGCCCGTCCTCATCGGCAA
CCACACCACGTTTGCAGACGCCCTCCTCCTCCACTTTCACGCCTCTGGCG
GCGTCAGCAAGGCAGAGAACGCCCGTATCCCGCTTGTTGGCGCCATGGCG
CGCGCGACGCGCTGCATCTTCGTCGACCGCGCGTCCGTCGATTCCAGGGC
CGCCACGCGCACGCTGTCGCTGTACGACCAGCTTCGCTTCAGCGGGCTGC
GCCCGTTCGTGAACCGAACAAGGAAGCTGTCTGTCCCCAGACGCGCGCTC
ATGGCCGTCTGCGCCTCCCTCTTCTTCCTGCCTCGCCTCCTCCTCTTTGT
CACGTCGCTCGTCTGCTACGCGCTGCTCAGCGCCGCCCTGGACGCCGGCA
CCGACCCCACCAAGCCCCTGCCTGCGAGCCGCGTGCGTATTCTCGCCCTC
ATCGGCACCCCGCTGCGACGAGTCGTGTTCTTCGCGCTCGGCTTCCTCCA
CATCACCGTCAAGGGAGAGGCAGCCCCGCGGGAAGTGGCGCCCGTCCTCA
TCGGCAACCACACCACGTTTGCAGACGCCCTCCTCCTCCACTTTCACGCC
TCTGGCGGCGTCAGCAAGGCAGAGAACGCCCGTATCCCGCTTGTTGGCGC
CATGGCGCGCGCGACGCGCTGCATCTTCGTCGACCGCGCGTCCGTCGATT
CCAGGGCCGCCACG
back to top