mRNA_M-pyrifera_M_contig11648.3428.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11648.3428.1
Unique NamemRNA_M-pyrifera_M_contig11648.3428.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig11648.3428.1 vs. uniprot
Match: D8LK63_ECTSI (Actin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK63_ECTSI)

HSP 1 Score: 444 bits (1142), Expect = 1.150e-149
Identity = 208/275 (75.64%), Postives = 245/275 (89.09%), Query Frame = 1 
Query:    1 KMLDDDRERRKNLPNRSALPSTWYKEAVVMDVGSGWTRMGLAGEDKPSCSFPSVVGRIDLKIYDQILGQDEKVFVGHGAVEEAGKRAAQRDLPEGSGPVPSPIMLQHPLSNGAVTDWDDMEELWRYGIVDAMGLDPIEHPVLMADSTATAPGEREKATEVLFETLSTPAVHMALQPVLALYACGPSSGLVVDVGESGTQVAPIFDGFVLERGVRLINLGGRDVTRNLGALVNAKVGLMGGDDFDVDHPCDALKLEMLKAKVCFVSENVDEDNARM 825
            K+L++DR+RR NLP+R +LPSTW+KEAVVMDVGSGWTRMGLAG++KPSC FP++VGR+DL+ YD+I GQDE+VFVGH A++EA KRAA R+LP+  GP+P PI+LQHPLS G VTDWDDMEELWR+GI D M L  +EHPVLMADSTAT P  REKATEVL ETLSTPAVHMALQPVLALYACGP+SGLVVD+GESGTQVAPIFDGFVLE G+R + LGG+D+TR+L ALVNAKVGLMGGD+F+ D PCD ++LE LKAKVCFVSE+VD+DNA+M
Sbjct:  295 KLLEEDRDRRANLPDRGSLPSTWHKEAVVMDVGSGWTRMGLAGQEKPSCVFPTIVGRMDLRAYDRIAGQDERVFVGHHAIDEANKRAADRELPDRRGPMPRPILLQHPLSEGVVTDWDDMEELWRFGIEDEMQLGAMEHPVLMADSTATEPSAREKATEVLMETLSTPAVHMALQPVLALYACGPTSGLVVDIGESGTQVAPIFDGFVLETGIRWVGLGGKDITRHLAALVNAKVGLMGGDEFEPDDPCDVMELEALKAKVCFVSEDVDKDNAKM 569
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BLAST of mRNA_M-pyrifera_M_contig11648.3428.1 vs. uniprot
Match: A0A6H5JMD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMD8_9PHAE)

HSP 1 Score: 395 bits (1015), Expect = 7.300e-135
Identity = 185/246 (75.20%), Postives = 214/246 (86.99%), Query Frame = 1 
Query:   88 MDVGSGWTRMGLAGEDKPSCSFPSVVGRIDLKIYDQILGQDEKVFVGHGAVEEAGKRAAQRDLPEGSGPVPSPIMLQHPLSNGAVTDWDDMEELWRYGIVDAMGLDPIEHPVLMADSTATAPGEREKATEVLFETLSTPAVHMALQPVLALYACGPSSGLVVDVGESGTQVAPIFDGFVLERGVRLINLGGRDVTRNLGALVNAKVGLMGGDDFDVDHPCDALKLEMLKAKVCFVSENVDEDNARM 825
            MDVGSGWTRMGLAG++KPSC FP++VGR+DL+ YD+I GQDE+VFVGH A++EA KR A R+LP+  GP+P PI+LQ PLS G VTDWDDMEELWR+GI D M LD +EHPVLMADSTAT P  REKATEVL ETLSTPAVHMALQPVL LYACGP+SGLVVD+GESGTQ  PIFDGFV+E G+R + LGG+D+TR+L ALVNAKVGL+GGDDFD D PCD +KLE LKAKVCFVSE+VD+DNA+M
Sbjct:    1 MDVGSGWTRMGLAGQEKPSCVFPTIVGRMDLRTYDRIAGQDERVFVGHHAIDEANKRTADRELPDRRGPMPRPILLQRPLSEGVVTDWDDMEELWRFGIEDEMQLDAMEHPVLMADSTATEPSAREKATEVLMETLSTPAVHMALQPVLTLYACGPTSGLVVDIGESGTQATPIFDGFVVETGIRWVGLGGKDITRHLAALVNAKVGLLGGDDFDPDDPCDVMKLEALKAKVCFVSEDVDKDNAKM 246
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BLAST of mRNA_M-pyrifera_M_contig11648.3428.1 vs. uniprot
Match: Q948X5_NEOYE (Actin n=3 Tax=Bangiaceae TaxID=31345 RepID=Q948X5_NEOYE)

HSP 1 Score: 160 bits (404), Expect = 3.730e-43
Identity = 89/250 (35.60%), Postives = 142/250 (56.80%), Query Frame = 1 
Query:   73 KEAVVMDVGSGWTRMGLAGEDKPSCSFPSVVGRIDLKIYDQILGQDEK-VFVGHGAVEEAGKRAAQRDLPEGSGPVPSPIMLQHPLSNGAVTDWDDMEELWRYGIVDAMGLDPIEHPVLMADSTATAPGEREKATEVLFETLSTPAVHMALQPVLALYACGPSSGLVVDVGESGTQVAPIFDGFVLERGVRLINLGGRDVTRNLGALVNAKVGLMGGDDFDVDHPCDALKLEMLKAKVCFVSENVDEDNA 819
            K AVV+D GSG  + G+AGED P   FP+V+G    K    ++G   K V+VG  A+   G                  +++++PL +G VT+W DME++W +G    + +DP EHP L+ ++       RE+ T+++FET + PA ++A+Q VL+LYA G +SG+VVD G+  T   PI++G+ L   V+ I+L GRD+T  L  L+  K     G  F      + ++   +K ++CFV+E+ D++ A
Sbjct:    3 KPAVVIDNGSGRCKAGIAGEDSPKSVFPAVIGTPKAKSI--MVGTGSKDVYVGDAAMARRGV-----------------LIIKYPLEHGIVTNWGDMEKIWHHGFFTELRVDPAEHPCLLTEAPLNPKANRERMTQIMFETFNVPAFYVAIQAVLSLYASGRTSGIVVDSGDGVTHTVPIYEGYSLPHAVQRIDLAGRDLTEYLCRLLQTK-----GYSFTTSAEKEIVR--DIKQQLCFVAEDYDKEMA 226
[Close]
BLAST of mRNA_M-pyrifera_M_contig11648.3428.1 vs. uniprot
Match: B4GQ53_DROPE (GL15751 n=6 Tax=pseudoobscura subgroup TaxID=32358 RepID=B4GQ53_DROPE)

HSP 1 Score: 159 bits (401), Expect = 1.180e-42
Identity = 88/245 (35.92%), Postives = 137/245 (55.92%), Query Frame = 1 
Query:   79 AVVMDVGSGWTRMGLAGEDKPSCSFPSVVGRIDLKIYDQILGQDEKVFVGHGAVEEAGKRAAQRDLPEGSGPVPSPIMLQHPLSNGAVTDWDDMEELWRYGIVDAMGLDPIEHPVLMADSTATAPGEREKATEVLFETLSTPAVHMALQPVLALYACGPSSGLVVDVGESGTQVAPIFDGFVLERGVRLINLGGRDVTRNLGALVNAKVGLMGGDDFDVDHPCDALKLEMLKAKVCFVSENVDED 813
            A+VMD+GSG  ++G  G+D P+  FPS+VGR   +    +LG       G G VE      AQ+            + L++P+  GAV DWDDME++W Y   + MG+ P EHPVL+A+    A   RE  T+++FE   TPA+++A+Q VL LYA G ++G+VVD G+  T   PIF+G+ +  GV  + L GRD+T  +  +++       G  F      + ++   LK + C+V+ + D++
Sbjct:    3 ALVMDIGSGICKVGFGGDDAPTAIFPSIVGRP--RHVTAMLGIGSNRPYGAGRVEAYVGDEAQKSR--------GVLALKYPIERGAVVDWDDMEKIWHYAFHNVMGVAPEEHPVLLAEPPLNAKASRETVTQIMFEKFDTPAMYLAVQAVLTLYATGRTTGMVVDSGDGVTHSVPIFEGYAVTHGVSHLELAGRDLTDYMMRILHES-----GSSFQTTAEREIVR--DLKERHCYVALDFDQE 230
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BLAST of mRNA_M-pyrifera_M_contig11648.3428.1 vs. uniprot
Match: R7QEX9_CHOCR (Actin n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEX9_CHOCR)

HSP 1 Score: 157 bits (397), Expect = 4.010e-42
Identity = 87/251 (34.66%), Postives = 140/251 (55.78%), Query Frame = 1 
Query:   73 KEAVVMDVGSGWTRMGLAGEDKPSCSFPSVVGRIDLKIYDQILGQDEK-VFVGHGAVEEAGKRAAQRDLPEGSGPVPSPIMLQHPLSNGAVTDWDDMEELWRYGIVDAMGLDPIEHPVLMADSTATAPGEREKATEVLFETLSTPAVHMALQPVLALYACGPSSGLVVDVGESGTQVAPIFDGFVLERGVRLINLGGRDVTRNLGALVNAKVGLMGGDDFDVDHPCDALKLEMLKAKVCFVSENVDEDNAR 822
            K AVV+D GSG  + GLAGED P   FP+VVGR   K+   +LG + K  F+G  A+   G                  +++++PL +G VT+WDDME++W +     + +DP EHPVL+ ++       RE+ T+V+FET   PA    +Q VL+LYA G +SG+VVD G+  T   PI++G+ L   +  ++L GRD+T  +  L+  +     G  F      + ++   +K  +CFV+++ + ++A+
Sbjct:    3 KPAVVIDNGSGRCKAGLAGEDAPKAVFPAVVGRP--KVKGVMLGANTKDEFIGEAAMARRGV-----------------LLIKYPLEHGIVTNWDDMEKIWAHAFTGELRVDPQEHPVLLTEAPLNPKSNRERMTQVMFETFMVPAFFANIQAVLSLYASGRTSGIVVDSGDGVTHTVPIYEGYSLPHAINRLDLAGRDLTAWMATLLQQR-----GYSFTTSAELEIVR--DIKQSLCFVAKDYEAEDAK 227
[Close]
BLAST of mRNA_M-pyrifera_M_contig11648.3428.1 vs. uniprot
Match: A0A7S2Z738_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S2Z738_9CHLO)

HSP 1 Score: 155 bits (391), Expect = 8.400e-42
Identity = 81/249 (32.53%), Postives = 143/249 (57.43%), Query Frame = 1 
Query:   76 EAVVMDVGSGWTRMGLAGEDKPSCSFPSVVGRIDLKIYDQILGQDEKVFVGHGAVEEAGKRAAQRDLPEGSGPVPSPIMLQHPLSNGAVTDWDDMEELWRYGIVDAMGLDPIEHPVLMADSTATAPGEREKATEVLFETLSTPAVHMALQPVLALYACGPSSGLVVDVGESGTQVAPIFDGFVLERGVRLINLGGRDVTRNLGALVNAKVGLMGGDDFDVDHPCDALKLEMLKAKVCFVSENVDEDNAR 822
            +A+V+D GSG  + G AG+D P   FPS+VGR  +     ++G D++ +VG  A        A+R +          + L++P+ +G VT+WDDME++W +   + + + P EHPVL+ ++       REK T+++FET   P +++A+Q VL+LYA G ++G+V+D G+  +   PI++GF L   +  I+L GRD+T +L  ++  +     G  F      + ++    K K+C+++ + DE+ A+
Sbjct:   43 QALVVDNGSGMCKAGFAGDDAPRAVFPSLVGRPKVTATKAMVGVDKEAYVGDEA-------QAKRGI----------LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPHNPKSNREKMTQIMFETFDVPQLYVAIQAVLSLYASGRTTGMVLDCGDGVSHCVPIYEGFSLPHAIMRIDLAGRDITDHLKKILTER-----GYSFTTSAEREIVR--DAKEKLCYIALDYDEEMAK 267
[Close]
BLAST of mRNA_M-pyrifera_M_contig11648.3428.1 vs. uniprot
Match: B5MEK8_NEOYE (Actin n=8 Tax=Bangiaceae TaxID=31345 RepID=B5MEK8_NEOYE)

HSP 1 Score: 155 bits (392), Expect = 2.230e-41
Identity = 84/249 (33.73%), Postives = 145/249 (58.23%), Query Frame = 1 
Query:   73 KEAVVMDVGSGWTRMGLAGEDKPSCSFPSVVGRIDLKIYDQILGQDEKVFVGHGAVEE-AGKRA-AQRDLPEGSGPVPSPIMLQHPLSNGAVTDWDDMEELWRYGIVDAMGLDPIEHPVLMADSTATAPGEREKATEVLFETLSTPAVHMALQPVLALYACGPSSGLVVDVGESGTQVAPIFDGFVLERGVRLINLGGRDVTRNLGALVNAKVGLMGGDDFDVDHPCDALKLEMLKAKVCFVSENVDED 813
            K AVV+D GSG  + G+AGED P   FP+V+G            + + + VG GA +E  G  A A+R +          +++++PL +G VT+W+DME++W +     + +DP EHPVL+ ++       RE+ T+++FE+ S PA ++A+Q VL+LYA G +SG+V+D G+  T   PI++G+ L   V  I+L GRD+T ++  L+  +     G  F      + ++   +K ++C+V+E+ +++
Sbjct:    4 KAAVVIDNGSGRCKTGIAGEDSPKSVFPAVIG----------TPKQKGIMVGSGAKDEYIGDAAMARRGV----------LLIKYPLEHGIVTNWNDMEKIWHHAFYSELRVDPAEHPVLLTEAPLNPKANRERMTQIMFESFSVPAFYVAIQAVLSLYASGRTSGVVIDSGDGVTHTVPIYEGYSLPHAVLRIDLAGRDLTAHMAKLLQQR-----GYSFTTSAELEIVR--DIKQQLCYVAEDYEKE 225
[Close]
BLAST of mRNA_M-pyrifera_M_contig11648.3428.1 vs. uniprot
Match: ACT2_PLAF7 (Actin-2 n=61 Tax=Eukaryota TaxID=2759 RepID=ACT2_PLAF7)

HSP 1 Score: 155 bits (391), Expect = 3.260e-41
Identity = 81/249 (32.53%), Postives = 145/249 (58.23%), Query Frame = 1 
Query:   79 AVVMDVGSGWTRMGLAGEDKPSCSFPSVVGRIDLKIYDQILGQDEK-VFVGHGAVEEAGKRAAQRDLPEGSGPVPSPIMLQHPLSNGAVTDWDDMEELWRYGIVDAMGLDPIEHPVLMADSTATAPGEREKATEVLFETLSTPAVHMALQPVLALYACGPSSGLVVDVGESGTQVAPIFDGFVLERGVRLINLGGRDVTRNLGALVNAKVGLMGGDDFDVDHPCDALKLEMLKAKVCFVSENVDEDNAR 822
            A+V+D GSG  + GLAG+D P C FPS+VGR   K+ + ++G ++K  +VG  A  + G                  + L++P+ +G VT+WDDME++W +   + + + P EHPVL+ ++       REK T+++FET   PA+++++Q +L+LYA G ++G+V+D G+  +   PI++G+VL   +  I++ GRD+T ++  L   +     G  F      + ++   +K K+C+++ + DE+  R
Sbjct:    7 ALVVDNGSGMVKSGLAGDDAPKCVFPSIVGRP--KMPNIMIGMEQKECYVGDEAQNKRGI-----------------LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVSPEEHPVLLTEAPLNPKTNREKMTQIMFETFDVPAMYVSIQAILSLYASGRTTGIVLDSGDGVSHTVPIYEGYVLPHAINRIDMAGRDLTYHMMKLFTER-----GHTFTTTAEREIVR--DIKEKLCYIAMDYDEELKR 229
[Close]
BLAST of mRNA_M-pyrifera_M_contig11648.3428.1 vs. uniprot
Match: A0A146FNL8_ASPKA (Actin-1 n=1 Tax=Aspergillus kawachii TaxID=1069201 RepID=A0A146FNL8_ASPKA)

HSP 1 Score: 152 bits (383), Expect = 4.590e-41
Identity = 84/247 (34.01%), Postives = 135/247 (54.66%), Query Frame = 1 
Query:   61 STWYKEAVVMDVGSGWTRMGLAGEDKPSCSFPSVVGRIDLKIYDQIL--GQDEKVFVGHGAVEEAGKRAAQRDLPEGSGPVPSPIMLQHPLSNGAVTDWDDMEELWRYGIVDAMGLDPIEHPVLMADSTATAPGEREKATEVLFETLSTPAVHMALQPVLALYACGPSSGLVVDVGESGTQVAPIFDGFVLERGVRLINLGGRDVTRNLGALVNAKVGLMGGDDFDVDHPCDALKLEMLKAKVCFVS 795
            +T +   +V+D GSG  R G AGE+ PSC FPS VGR     + +++  G +  VF+G  A E  G                  + +++PL +G VTDWDDME++W Y   + +   P EHPVL+ +        R+ A +++FET + PA++ ++Q VL+LYA G ++G+V+D G+  +   P+F+GF +   +R I++ GRDVT  L  L+     ++           +   + M+K KVC+VS
Sbjct:    4 ATLHNAPIVIDNGSGTIRAGFAGEEIPSCYFPSFVGRPK---HPRVMAGGLEGDVFIGQRAQELRGL-----------------LKIRYPLEHGIVTDWDDMEKIWHYVYENELKTLPEEHPVLLTEPPLNPRKNRDAAAQIMFETFNVPALYTSIQAVLSLYASGRTTGVVLDSGDGVSHAVPVFEGFAIPNSIRRIDVAGRDVTEQLQLLLRKNGHVL-------HTSAEKEVVRMIKEKVCYVS 223
[Close]
BLAST of mRNA_M-pyrifera_M_contig11648.3428.1 vs. uniprot
Match: A0A524D9N7_9ARCH (Actin, cytoplasmic 2 n=1 Tax=Candidatus Lokiarchaeota archaeon TaxID=2053489 RepID=A0A524D9N7_9ARCH)

HSP 1 Score: 154 bits (388), Expect = 9.600e-41
Identity = 79/247 (31.98%), Postives = 137/247 (55.47%), Query Frame = 1 
Query:   76 EAVVMDVGSGWTRMGLAGEDKPSCSFPSVVGRIDL-KIYDQILGQDEKVFVGHGAVEEAGKRAAQRDLPEGSGPVPSPIMLQHPLSNGAVTDWDDMEELWRYGIVDAMGLDPIEHPVLMADSTATAPGEREKATEVLFETLSTPAVHMALQPVLALYACGPSSGLVVDVGESGTQVAPIFDGFVLERGVRLINLGGRDVTRNLGALVNAKVGLMGGDDFDVDHPCDALKLEMLKAKVCFVSENVDED 813
            +A+V+D G+G ++ G  GED+P   FP++VGR     I  ++   D + ++G  A+E  G                  + L +P+ +G +TDW  ME +W Y     + +DP EHPVL+ ++       REK TE++FET + PA+++A Q VL+LYA G ++G+V+D+G+  + + PI++GF L   ++ I+L GRD+T  L  L+         D F      +   +  +K K+C+V+ + +++
Sbjct:    9 KALVVDNGTGISKNGFGGEDQPRSVFPTMVGRPKYGNIMPELQDYDREWYIGQDAMELKGV-----------------LELNYPIEHGTITDWPSMERIWHYTFYSDLRVDPSEHPVLLTEAPLNPRKNREKMTEIMFETFNIPALYVATQAVLSLYASGRATGVVIDIGDGVSHIVPIYEGFALSHAIQRIDLAGRDITGYLQRLLRQ-------DGFSFTTSAEKEIVRDIKEKLCYVALDTEKE 231
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11648.3428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK63_ECTSI1.150e-14975.64Actin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JMD8_9PHAE7.300e-13575.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
Q948X5_NEOYE3.730e-4335.60Actin n=3 Tax=Bangiaceae TaxID=31345 RepID=Q948X5_... [more]
B4GQ53_DROPE1.180e-4235.92GL15751 n=6 Tax=pseudoobscura subgroup TaxID=32358... [more]
R7QEX9_CHOCR4.010e-4234.66Actin n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7... [more]
A0A7S2Z738_9CHLO8.400e-4232.53Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
B5MEK8_NEOYE2.230e-4133.73Actin n=8 Tax=Bangiaceae TaxID=31345 RepID=B5MEK8_... [more]
ACT2_PLAF73.260e-4132.53Actin-2 n=61 Tax=Eukaryota TaxID=2759 RepID=ACT2_P... [more]
A0A146FNL8_ASPKA4.590e-4134.01Actin-1 n=1 Tax=Aspergillus kawachii TaxID=1069201... [more]
A0A524D9N7_9ARCH9.600e-4131.98Actin, cytoplasmic 2 n=1 Tax=Candidatus Lokiarchae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11648contigM-pyrifera_M_contig11648:4151..9647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score445.3
Seed ortholog evalue2.1e-122
Seed eggNOG ortholog2880.D8LK63
Preferred nameACTL10
KEGG koko:K05692,ko:K16616
KEGG Pathwayko04015,ko04145,ko04210,ko04390,ko04391,ko04510,ko04520,ko04530,ko04611,ko04670,ko04714,ko04745,ko04810,ko04919,ko04921,ko05100,ko05110,ko05130,ko05131,ko05132,ko05164,ko05205,ko05225,ko05410,ko05412,ko05414,ko05416,ko05418,map04015,map04145,map04210,map04390,map04391,map04510,map04520,map04530,map04611,map04670,map04714,map04745,map04810,map04919,map04921,map05100,map05110,map05130,map05131,map05132,map05164,map05205,map05225,map05410,map05412,map05414,map05416,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0001673,GO:0003674,GO:0005198,GO:0005200,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005856,GO:0005929,GO:0006996,GO:0007010,GO:0008150,GO:0009987,GO:0015629,GO:0016043,GO:0031514,GO:0032991,GO:0042995,GO:0043073,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044464,GO:0071840,GO:0120025
EggNOG free text desc.cytoskeleton organization
EggNOG OGsCOG5277@1,KOG0676@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021,ko03029,ko03036,ko04147,ko04812
Exons7
Model size825
Cds size822
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11648.3428.1prot_M-pyrifera_M_contig11648.3428.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11648 4154..9647 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815682.316566-UTR-M-pyrifera_M_contig11648:4150..41531622815682.316566-UTR-M-pyrifera_M_contig11648:4150..4153Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11648 4151..4153 +
1692277519.5997653-UTR-M-pyrifera_M_contig11648:4150..41531692277519.5997653-UTR-M-pyrifera_M_contig11648:4150..4153Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11648 4151..4153 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815682.3288026-CDS-M-pyrifera_M_contig11648:4153..42281622815682.3288026-CDS-M-pyrifera_M_contig11648:4153..4228Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11648 4154..4228 +
1692277519.6100335-CDS-M-pyrifera_M_contig11648:4153..42281692277519.6100335-CDS-M-pyrifera_M_contig11648:4153..4228Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11648 4154..4228 +
1622815682.3392377-CDS-M-pyrifera_M_contig11648:5078..52071622815682.3392377-CDS-M-pyrifera_M_contig11648:5078..5207Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11648 5079..5207 +
1692277519.6177955-CDS-M-pyrifera_M_contig11648:5078..52071692277519.6177955-CDS-M-pyrifera_M_contig11648:5078..5207Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11648 5079..5207 +
1622815682.350145-CDS-M-pyrifera_M_contig11648:6593..66591622815682.350145-CDS-M-pyrifera_M_contig11648:6593..6659Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11648 6594..6659 +
1692277519.6258376-CDS-M-pyrifera_M_contig11648:6593..66591692277519.6258376-CDS-M-pyrifera_M_contig11648:6593..6659Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11648 6594..6659 +
1622815682.3615477-CDS-M-pyrifera_M_contig11648:7144..73321622815682.3615477-CDS-M-pyrifera_M_contig11648:7144..7332Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11648 7145..7332 +
1692277519.6362472-CDS-M-pyrifera_M_contig11648:7144..73321692277519.6362472-CDS-M-pyrifera_M_contig11648:7144..7332Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11648 7145..7332 +
1622815682.3728821-CDS-M-pyrifera_M_contig11648:7781..79171622815682.3728821-CDS-M-pyrifera_M_contig11648:7781..7917Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11648 7782..7917 +
1692277519.6477888-CDS-M-pyrifera_M_contig11648:7781..79171692277519.6477888-CDS-M-pyrifera_M_contig11648:7781..7917Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11648 7782..7917 +
1622815682.3855824-CDS-M-pyrifera_M_contig11648:8416..85211622815682.3855824-CDS-M-pyrifera_M_contig11648:8416..8521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11648 8417..8521 +
1692277519.6574078-CDS-M-pyrifera_M_contig11648:8416..85211692277519.6574078-CDS-M-pyrifera_M_contig11648:8416..8521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11648 8417..8521 +
1622815682.397532-CDS-M-pyrifera_M_contig11648:9524..96471622815682.397532-CDS-M-pyrifera_M_contig11648:9524..9647Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11648 9525..9647 +
1692277519.6668882-CDS-M-pyrifera_M_contig11648:9524..96471692277519.6668882-CDS-M-pyrifera_M_contig11648:9524..9647Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11648 9525..9647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11648.3428.1

>prot_M-pyrifera_M_contig11648.3428.1 ID=prot_M-pyrifera_M_contig11648.3428.1|Name=mRNA_M-pyrifera_M_contig11648.3428.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=274bp
MLDDDRERRKNLPNRSALPSTWYKEAVVMDVGSGWTRMGLAGEDKPSCSF
PSVVGRIDLKIYDQILGQDEKVFVGHGAVEEAGKRAAQRDLPEGSGPVPS
PIMLQHPLSNGAVTDWDDMEELWRYGIVDAMGLDPIEHPVLMADSTATAP
GEREKATEVLFETLSTPAVHMALQPVLALYACGPSSGLVVDVGESGTQVA
PIFDGFVLERGVRLINLGGRDVTRNLGALVNAKVGLMGGDDFDVDHPCDA
LKLEMLKAKVCFVSENVDEDNARM
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mRNA from alignment at M-pyrifera_M_contig11648:4151..9647+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11648.3428.1 ID=mRNA_M-pyrifera_M_contig11648.3428.1|Name=mRNA_M-pyrifera_M_contig11648.3428.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5497bp|location=Sequence derived from alignment at M-pyrifera_M_contig11648:4151..9647+ (Macrocystis pyrifera P11B4 male)
AAAATGTTGGACGATGACAGGGAGCGAAGGAAGAACCTGCCAAACCGCAG
CGCCTTGCCGTCCACCTGGTACAAGGAGGTCAGCCCGTGTTTTCTGGGAT
TTGTTAGTGCCTTGGTTGTGCTGCTGTGCGCATGTAGATAAGGAGGTCAG
ACCGTGTGCCGTGTGATTTTTTGCTTTGGTTGTGCTGCCGCCGGGCAGAT
AGATGCCTGTGTACTTTTTTTCGCGAAATTATGTTCGAATGCTGTCAGCT
GTGGACTCGACCGCATGAGGGGTTGATACAAAACTCAACTTTACATGTGT
GTTGTGTATGTGTGCTTCGAACCACGTGCCGTGATCGTGTGCGGTGATTG
TGTTGGTGTGATTTGCGTGCTGCTGTTTGGTGTCGCTGCGGCTTTGTGCT
GTGGATACCAGGTATCGTACCTGGTCTGTGTTCTGTGGTTGTGTTTTTCG
TATTGATCGTATACGCCGAGTAGTATTCCCCGCGATCATGTGTTGTGATA
CTGTGCTGTACTGCTGTGCTGAAAAGCAGATCCCCCCTCTGTCAATGGTT
TAACACCTGGCAATTGACTACCAGATATGTTACCACGATGTTGTCACAGT
AGAAGACGTGCCAGTATTAAATATCGGAGATCGACCGAAGGGTGAGTCGT
CCCCTTTTCCCCGCCTTCTGCCTCCTGACGACGGTTTTGAGATCGGCGAT
CGGCGTGCACACGATCCACACGCCTGTATGTTTACCTTATCGCCTCCCCC
TATCCCCTGTCCCCTGGCTTCCACGGCAAGGCGGTGGTGATTTTCAGGTG
TGGGTTCATACACGATGCTATTTATTTACCTTGAGGTGCCTCCCCCCCTT
TATGGTCATACGACTACGGCCGTGCATGACATGAGTACACTCTTGTACCC
CCTACCCCCTGGTTTCCGCGGCGATCAGGCGGTGGTGATGGATGTGGGTT
CGGGCTGGACGAGGATGGGCCTGGCCGGCGAGGACAAACCGTCTTGCTCC
TTCCCGAGCGTTGTAGGAAGGATAGACCTCAAGATTTACGACCAGATTTT
GGGCCAGGTACGACACGACATGTTGTACTTGTCGCGCCGATTGTGGCTAA
CTAGTGCTGTGATGTTTTTGATTGTCGGAAATATCGAATTATCGCTGACC
GTGTACATACAACGTAGGTTCTCTTTGCCTAGACTGTACGGCCTCGTTAC
GCTGAACTCCGAGGTCACCCAGCACCCAAGACCTGCCTCTCCGTTCCGTG
TAGACCACGAGGTACCAACCCACATCGGTGTGTTTCTTCCGCACCATAAC
CACACGAGAGAGAACCTGCCTAGGGGCGTCTTTCCCACAACCGTGATACT
TTTTTTTTCGTTATCGGATTTTATCGATTTATCGATATAACTGTAATATT
TTGAAATAAACGTCGAATTACGACAGTAGTACGTACCAGGTTTTGGCAAT
ATTTTGTGGTATTCAATCTCAAAAGCGATGTTGCAGTAGGTTGTGTTTGT
ATGCAGACGAAAGGTTTCGCACCTCGGATAGATAGATCATCTACAGATCA
GATAGATCATCTAGTTCCTTCACCTGCCGTTATGAGGTGCTCTGCAGGAT
CTGTCTTATAGGGCAGATAGATCACACCCAGGAAGCACGTCCTACAGCAG
TAGAACGTGCACGCTAGACGGCTCCCACCCCGCCAACATGAGCTGTGGTA
CTCGCGCTGCAGATCATATGCGGATCAGGAATCCGTCTGCGTTGACAGAT
ATAGATCATGATGTAGGAAGCGATGATCTATCTGCCTGTCCCGAGGTTTT
CGATATGTTTTTTTCAGAATATACATTACGGATCTCGATGTTTTAAAAAA
AAGTCGTCGACTAAATGTTGAGCTTCCCAATATGAGAGTATTTCCTGGAC
CGGTGCTTCGAAATGTCGTGGACGTCGTGCAGTGTTTCGGAAATATCCCA
GACCGATGTCTTAAGGTATCGCAGGCCCAGCAGCAACAGTGCAGTATGGC
GGACCGGTGGTTATCTAATGCTTGCAGACCGGTTTTTCAAAGCGTGCCGG
ACTGATGGCTTCAGTTCAATTATGGTAGACCGATGCTTCAAAGTATGAAT
ACGACAAGGTCTTTGGGTCATTCTTATCGGGGAGCTTTTTTTCGCCATAA
TTTCCAGTTTTTTCGTGCAATTTTATAATGTTGCAGATTTTCCGGATTTT
TTTTTTCCAAATATGTGTGTGTAATCTAACTTTCCTCATTTTCTTGCTTT
TGAAGAATTTCCAAAATTGTGTTAGAACGCCTCCGTATCTCGATACATAT
TTCCAATTATTTCCAAACTTGGGAATTTTTGGGGAAAAAAAGCTCTCCAA
TAGGAATGGGCCTTAGAAGCCCTCCGAATTTGGCCTGTTGAACCCGGTTC
CACCATGCCTGTTTTGTCATGTTTGTGTTCAATTGTTGTACAGGACGAGA
AAGTGTTCGTGGGCCACGGCGCCGTGGAGGAGGCGGGCAAGAGAGCAGCA
CAACGAGATGTGAGATTTTTTTTAACAGGTGTTGTGGTTGTTGTTGGTGG
TGGTGATGGTGGTGGTATTGGCCTCTGTCGTTGGTAGTGGTGGTGATGGT
GGTCGGGGTGGTGGTGATTGGTCTTGGTGCTATAATATTTAAAGGGTCCT
TATATTTCCGGCCAGAGTAGTACAACATACTATTAGGGGGGACCATAGTA
AATAGGACCTATGGTACACACAAAAACATATACATTTCTCTGTTTTTACT
GACAATATTTGGTCCTATTTACTATGGTCCCCCGTAATATTAATGCCGGG
TACCTGATATTAAAATTGTCTAGACAGTCCTTTTACATGTCCGTACTGAG
AGTGGTATTATAGACTCGTAAAACTTTGGAATTGTTTTCTGTTAATAGAG
GACACGATACGATGTTATCACGATGCTTGTTTAATTTTCTCGACCCCTCA
CCACCCCTCATCCCGCCCCCGCCCCCTTCCTGCGTGGCCACCAGCTCCCC
GAGGGCAGCGGTCCCGTGCCTAGCCCTATTATGCTCCAGCACCCGCTGTC
GAATGGGGCCGTGACGGATTGGGACGACATGGAGGAGTTGTGGAGATATG
GGATCGTTGATGCGATGGGGTTAGATCCCATCGAACACCCTGTGCTGATG
GCTGATTCCACGGCCACTGCTCCCGGCGAAAGGTGTGTGCACGGTGGTTT
TGATCGCGTCACGGTAGTAGTAGTAGGCGTAGCGGTAGTAGTAGCAGTAG
CAGTAGCAGCAGTAGCAGTAGCAGTAGAAGCAGCAGTAGAAGCAGTAGCA
GTAGCAGTAGAAGCAGCAGTGGAAGCAGTAGTAGCAGAAGCAGCAGAAGC
AGAAGCAGCAGTAGCAGCAGTAAGAGTAGGAGTAGGAGTAGTAGCAGTAG
TAGTAGTAGTAGCAGTAGGAGCGGTAGTAGTAGTGGTATTTAGTAGTTAG
CAGTAGCAGTAGCAAGTCCCAAGGGTCACGAGCAGAGTCTGCTTTTGTGG
AAGTAGTAGAGTATCCATTCTATTGCGGACACTCTTTGCGTCCGTCCGGT
GCATCCGGGTCGATCAGGATGGTTGGTTGATCGTCGTCGTCGTCGTCATT
TTTTCGTCTTTCTCTTATTATCCGTCTCCAGGGAAAAAGCCACCGAAGTT
CTGTTCGAAACCCTGTCGACGCCTGCCGTGCACATGGCGCTCCAGCCCGT
GCTCGCCCTGTACGCCTGTGGTCCTAGCTCTGGGCTGGTTGTGGACGTCG
GGGAGTCGGGGACGCAGGTAAAACTATGGCGTTTGATGGTTGTCGCGTGG
GGGTGGAAGGGAGGAAGGAGGTGTCCTCATGCCATGCATGGCCGTAGTCG
TACGACCATAGACCCCCGCATCCCTATCTGTACACAATGCCGAGACGAAG
ACTGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTTGTTTGGGGTTGTGTCT
GGAGGGAGGGTTCGGGGTGGTGGGTGTTGACATTTTCGTTATGGTGGTGG
TTGTTGTTGTTGGTTTTCGTGTCGTTGTTTTGCTGTTGATGTTGTTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGTGGGATATCTCGAAACCACCACC
ACCCTCCTCCACTTATGCTTGGTTGTTTTGCTGCGCCGTGTGTTGAATAA
AAACGTTTTTTCTTTGTGTTGCTCTCGAACTGTTCTCATTGCGCTTTGCC
GCCGCCGCCGCCTCTCTCCTCTCCGGTCGGCGTATGTGGTTTTGATCTGA
TTCTGATTGGCCACAGGTCGCTCCGATTTTCGACGGTTTCGTACTAGAGA
GAGGCGTGCGCCTGATCAACCTCGGGGGGAGGGACGTAACGAGGAACCTT
GGTGCCCTAGTCAACGCTAAGGTGAATGGGGAGGGGAGAGGGGATAAGGA
AGAGGAAATACGAATAGTATGTTTCGATCAGATGAAGATTTCGGTAAAAG
GAGGGGGGGGCGAGGGGGAGGGGAGTTACTCATGTCATGCATGGTCGCAG
TTGTATGGACATATAGACCGTTGCATCCCTACAGTGCCGGGACGGAGCAC
GTCGGGTTTTTACCGACAAGGCCAGGCAGACATGTACTTGCACGAACCGC
GAAGCGCCGTGAGGTGTCAGGCAAGTCGGGGGGAGGGAGGGGGTATGGAG
GAGGTAGTAGTATGTTTTGATGATGTGAGGTTTCGTTGAAAGGAGGGAGG
GGCGGAGGGGGGGGGGCGGGGGCGGGGCGGAGAAGGAGGAGGAAGTACTG
TAGTATAAACTGATGAATGTGTCGCGCTGAGAGTCGGGAGGGGAGGAGAA
ATAAGTAGCATTTACCAGTACTTGAACACAGAATTAATGTGTAATGCAAT
TTGCTAAATCGGGGGACCACAGTAACTAGGACCTACGGCACACAAAAACC
TATACATTTACCTACTTTTACTAACAATATTTGGTCCTATTTACTATGAT
GCCCGTACTACCTGGTACCATTTAATATTAGTAGTAACATTGGTTAATAC
TCGTACAACTACACGGGACCTAGATAAGCACTCGATTACACCTACGCCTC
GAGTTATGTCTCCCTGGTTTATCCTAGGGATACGGGTTTTGTTGAGAGGA
GGGGAAGGGGGGGGAGGGGAGGAGGAAGTAGTATGAGGTTGCATTGAGAG
TCGGGAGGGGGGAGGGGTGCGGGGGCATAAATATAAGCATCGTTTGGATT
CAATGCAAATATAAAAAACGATCTTACATTCAGGGACAGAGTGATCTATA
TTTATGAGGATTGCACTGAGAGTCGAAGAGGAGGGTGGGGAGTGTGTGCA
GAGATGTATAAGTTTTTGTGTGTGTGTTTTTTTTACCTTCATACTATATT
GTTACATACTTTGCCAAAACCCAGGTGGGTCTCATGGGCGGAGATGATTT
CGATGTGGACCACCCTTGCGACGCTTTGAAGCTGGAGATGCTGAAGGCTA
AGGTCTGCTTTGTCTCGGAGAACGTGGACGAGGACAACGCCAGGATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11648:4151..9647+

>mRNA_M-pyrifera_M_contig11648.3428.1 ID=mRNA_M-pyrifera_M_contig11648.3428.1|Name=mRNA_M-pyrifera_M_contig11648.3428.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1644bp|location=Sequence derived from alignment at M-pyrifera_M_contig11648:4151..9647+ (Macrocystis pyrifera P11B4 male)
ATGTTGGACGATGACAGGGAGCGAAGGAAGAACCTGCCAAACCGCAGCGC
CTTGCCGTCCACCTGGTACAAGGAGATGTTGGACGATGACAGGGAGCGAA
GGAAGAACCTGCCAAACCGCAGCGCCTTGCCGTCCACCTGGTACAAGGAG
GCGGTGGTGATGGATGTGGGTTCGGGCTGGACGAGGATGGGCCTGGCCGG
CGAGGACAAACCGTCTTGCTCCTTCCCGAGCGTTGTAGGAAGGATAGACC
TCAAGATTTACGACCAGATTTTGGGCCAGGCGGTGGTGATGGATGTGGGT
TCGGGCTGGACGAGGATGGGCCTGGCCGGCGAGGACAAACCGTCTTGCTC
CTTCCCGAGCGTTGTAGGAAGGATAGACCTCAAGATTTACGACCAGATTT
TGGGCCAGGACGAGAAAGTGTTCGTGGGCCACGGCGCCGTGGAGGAGGCG
GGCAAGAGAGCAGCACAACGAGATGACGAGAAAGTGTTCGTGGGCCACGG
CGCCGTGGAGGAGGCGGGCAAGAGAGCAGCACAACGAGATCTCCCCGAGG
GCAGCGGTCCCGTGCCTAGCCCTATTATGCTCCAGCACCCGCTGTCGAAT
GGGGCCGTGACGGATTGGGACGACATGGAGGAGTTGTGGAGATATGGGAT
CGTTGATGCGATGGGGTTAGATCCCATCGAACACCCTGTGCTGATGGCTG
ATTCCACGGCCACTGCTCCCGGCGAAAGCTCCCCGAGGGCAGCGGTCCCG
TGCCTAGCCCTATTATGCTCCAGCACCCGCTGTCGAATGGGGCCGTGACG
GATTGGGACGACATGGAGGAGTTGTGGAGATATGGGATCGTTGATGCGAT
GGGGTTAGATCCCATCGAACACCCTGTGCTGATGGCTGATTCCACGGCCA
CTGCTCCCGGCGAAAGGGAAAAAGCCACCGAAGTTCTGTTCGAAACCCTG
TCGACGCCTGCCGTGCACATGGCGCTCCAGCCCGTGCTCGCCCTGTACGC
CTGTGGTCCTAGCTCTGGGCTGGTTGTGGACGTCGGGGAGTCGGGGACGC
AGGGAAAAAGCCACCGAAGTTCTGTTCGAAACCCTGTCGACGCCTGCCGT
GCACATGGCGCTCCAGCCCGTGCTCGCCCTGTACGCCTGTGGTCCTAGCT
CTGGGCTGGTTGTGGACGTCGGGGAGTCGGGGACGCAGGTCGCTCCGATT
TTCGACGGTTTCGTACTAGAGAGAGGCGTGCGCCTGATCAACCTCGGGGG
GAGGGACGTAACGAGGAACCTTGGTGCCCTAGTCAACGCTAAGGTCGCTC
CGATTTTCGACGGTTTCGTACTAGAGAGAGGCGTGCGCCTGATCAACCTC
GGGGGGAGGGACGTAACGAGGAACCTTGGTGCCCTAGTCAACGCTAAGGT
GGGTCTCATGGGCGGAGATGATTTCGATGTGGACCACCCTTGCGACGCTT
TGAAGCTGGAGATGCTGAAGGCTAAGGTCTGCTTTGTCTCGGAGAACGTG
GACGAGGACAACGCCAGGATGGTGGGTCTCATGGGCGGAGATGATTTCGA
TGTGGACCACCCTTGCGACGCTTTGAAGCTGGAGATGCTGAAGGCTAAGG
TCTGCTTTGTCTCGGAGAACGTGGACGAGGACAACGCCAGGATG
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