mRNA_M-pyrifera_M_contig116440.3420.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116440.3420.1
Unique NamemRNA_M-pyrifera_M_contig116440.3420.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116440.3420.1 vs. uniprot
Match: A0A517WB88_9PLAN (Basal-body rod modification protein FlgD n=5 Tax=Gimesia TaxID=1649453 RepID=A0A517WB88_9PLAN)

HSP 1 Score: 216 bits (550), Expect = 1.690e-70
Identity = 115/117 (98.29%), Postives = 117/117 (100.00%), Query Frame = 1
Query:    1 NGLTADNFMKLLITELQNQDPTNPMGNEELLGQISSMRELQSNIELSDTLKEITSGQSLTQAAGLIGKQVEGKDSSDNSVSGVVERAFVRDSKAYVAIGNSEVPVSSITSVQEPASE 351
            NGLTADNFMKLLITELQNQDPTNPMGNEELLGQISSMRELQSNIELSDTLKEITSGQSLTQAAGLIGKQVEG+DSSDNSVSGVVERAFVRDSKAYVA+GNSEVPVSSITSVQEPASE
Sbjct:   29 NGLTADNFMKLLITELQNQDPTNPMGNEELLGQISSMRELQSNIELSDTLKEITSGQSLTQAAGLIGKQVEGQDSSDNSVSGVVERAFVRDSKAYVAVGNSEVPVSSITSVQEPASE 145          
BLAST of mRNA_M-pyrifera_M_contig116440.3420.1 vs. uniprot
Match: A0A518A4U3_9PLAN (Flagellar basal body rod modification protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A4U3_9PLAN)

HSP 1 Score: 184 bits (466), Expect = 1.060e-57
Identity = 94/117 (80.34%), Postives = 110/117 (94.02%), Query Frame = 1
Query:    1 NGLTADNFMKLLITELQNQDPTNPMGNEELLGQISSMRELQSNIELSDTLKEITSGQSLTQAAGLIGKQVEGKDSSDNSVSGVVERAFVRDSKAYVAIGNSEVPVSSITSVQEPASE 351
            NGLTA++FMK+LITELQNQDPT PMGNEELLGQISSMRELQSNIELSDTLKEIT+GQSLTQAAGLIGK++EG++ S + V+G+V+RAFVRD+KAYV IG SE+PVS+ITSV +PASE
Sbjct:   29 NGLTAESFMKMLITELQNQDPTKPMGNEELLGQISSMRELQSNIELSDTLKEITTGQSLTQAAGLIGKEIEGQEGSQSPVAGLVDRAFVRDNKAYVGIGTSELPVSAITSVTQPASE 145          
BLAST of mRNA_M-pyrifera_M_contig116440.3420.1 vs. uniprot
Match: A0A3D3RA93_9PLAN (Basal-body rod modification protein FlgD n=7 Tax=Planctomycetaceae TaxID=126 RepID=A0A3D3RA93_9PLAN)

HSP 1 Score: 177 bits (450), Expect = 2.910e-55
Identity = 93/116 (80.17%), Postives = 105/116 (90.52%), Query Frame = 1
Query:    1 NGLTADNFMKLLITELQNQDPTNPMGNEELLGQISSMRELQSNIELSDTLKEITSGQSLTQAAGLIGKQVEGKDSSDNSVSGVVERAFVRDSKAYVAIGNSEVPVSSITSVQEPAS 348
            NGLTA++FMKLLITELQNQDPT P+GNE+LL QISSMRELQSNIELSDTLKEIT+GQSLTQAA LIGK+VEG++   N V+GVVERAFVRD K+YV IG  E+PVS+ITSVQEPAS
Sbjct:   29 NGLTAESFMKLLITELQNQDPTEPLGNEQLLAQISSMRELQSNIELSDTLKEITTGQSLTQAAALIGKEVEGQEGQQNPVAGVVERAFVRDGKSYVGIGAFELPVSAITSVQEPAS 144          
BLAST of mRNA_M-pyrifera_M_contig116440.3420.1 vs. uniprot
Match: A0A517WWA2_9PLAN (Flagellar basal body rod modification protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WWA2_9PLAN)

HSP 1 Score: 171 bits (432), Expect = 1.500e-52
Identity = 85/116 (73.28%), Postives = 106/116 (91.38%), Query Frame = 1
Query:    1 NGLTADNFMKLLITELQNQDPTNPMGNEELLGQISSMRELQSNIELSDTLKEITSGQSLTQAAGLIGKQVEGKDSSDNSVSGVVERAFVRDSKAYVAIGNSEVPVSSITSVQEPAS 348
            +GLTA++F+KLLITELQNQDPT P+GNE+LL Q+SSMRELQSN+ELSDTL EIT GQSLTQAAGLIGK++EG+     +++G+V+RAFVRD KAYVA+G++E+PVS+ITSVQEPAS
Sbjct:   26 SGLTAEDFLKLLITELQNQDPTEPLGNEQLLAQLSSMRELQSNVELSDTLTEITLGQSLTQAAGLIGKEIEGQADDQPAIAGIVDRAFVRDGKAYVAVGDTELPVSAITSVQEPAS 141          
BLAST of mRNA_M-pyrifera_M_contig116440.3420.1 vs. uniprot
Match: A0A518IAQ6_9PLAN (Flagellar basal body rod modification protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518IAQ6_9PLAN)

HSP 1 Score: 170 bits (431), Expect = 2.130e-52
Identity = 86/114 (75.44%), Postives = 102/114 (89.47%), Query Frame = 1
Query:    1 NGLTADNFMKLLITELQNQDPTNPMGNEELLGQISSMRELQSNIELSDTLKEITSGQSLTQAAGLIGKQVEGKDSSDNSVSGVVERAFVRDSKAYVAIGNSEVPVSSITSVQEP 342
            NGLTAD FMKLLITELQNQDPT P+GNE+LL Q+SSMRELQSNIELSDTLKEIT+GQSLTQAAGLIGK++EG+D     V GVV+RAFVR+ KAYV +G+SE+PVS+I++V+ P
Sbjct:   26 NGLTADTFMKLLITELQNQDPTEPLGNEQLLAQLSSMRELQSNIELSDTLKEITTGQSLTQAAGLIGKEIEGQDGEQPPVEGVVDRAFVREGKAYVGVGSSELPVSAISNVRTP 139          
BLAST of mRNA_M-pyrifera_M_contig116440.3420.1 vs. uniprot
Match: A0A517VZ80_9PLAN (Flagellar basal body rod modification protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VZ80_9PLAN)

HSP 1 Score: 168 bits (425), Expect = 1.750e-51
Identity = 82/116 (70.69%), Postives = 104/116 (89.66%), Query Frame = 1
Query:    1 NGLTADNFMKLLITELQNQDPTNPMGNEELLGQISSMRELQSNIELSDTLKEITSGQSLTQAAGLIGKQVEGKDSSDNSVSGVVERAFVRDSKAYVAIGNSEVPVSSITSVQEPAS 348
            +GLTAD+F+KL ITELQNQDPT P+GNE+LL Q+SSMRELQSNIELSDTL EIT GQ LTQAAGLIGK++EG++    +++G+V+RAFVRD KAY+ +G++E+PVS+IT+VQEPAS
Sbjct:   26 SGLTADDFLKLFITELQNQDPTEPLGNEQLLNQLSSMRELQSNIELSDTLTEITLGQGLTQAAGLIGKEIEGQEDGQPAIAGIVDRAFVRDGKAYIGVGDAELPVSAITNVQEPAS 141          
BLAST of mRNA_M-pyrifera_M_contig116440.3420.1 vs. uniprot
Match: A0A836RGQ0_9PLAN (Flagellar hook capping protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A836RGQ0_9PLAN)

HSP 1 Score: 125 bits (314), Expect = 1.430e-34
Identity = 67/119 (56.30%), Postives = 89/119 (74.79%), Query Frame = 1
Query:    1 NGLTADNFMKLLITELQNQDPTNPMGNEELLGQISSMRELQSNIELSDTLKEITSG-------QSLTQAAGLIGKQVEGKDSSDNSVSGVVERAFVRDSKAYVAIGNSEVPVSSITSVQ 336
            N LT+++F+KLLIT+LQNQDPT PMGN+ELL QIS +R+LQSNIELSDTLK ++         Q L+ AA LIGK V GK  +D+ ++GVV+RAF+ + K YV IG+  + +S ITSV+
Sbjct:   23 NKLTSEDFLKLLITQLQNQDPTEPMGNDELLSQISMLRDLQSNIELSDTLKAMSDSFAANLLSQQLSAAASLIGKLVTGKTENDDVITGVVDRAFLENGKVYVGIGDRRIELSKITSVE 141          
BLAST of mRNA_M-pyrifera_M_contig116440.3420.1 vs. uniprot
Match: A0A517R594_9BACT (Flagellar basal body rod modification protein n=1 Tax=Planctomycetes bacterium Pan189 TaxID=2527980 RepID=A0A517R594_9BACT)

HSP 1 Score: 117 bits (294), Expect = 1.190e-31
Identity = 60/115 (52.17%), Postives = 87/115 (75.65%), Query Frame = 1
Query:    1 NGLTADNFMKLLITELQNQDPTNPMGNEELLGQISSMRELQSNIELSDTLKEITSGQSLTQAAGLIGKQVEGKDSSDNSVSGVVERAFVRDSKAYVAIGNSEVPVSSITSVQEPA 345
            N LT+++F++LLI +LQNQDP+ P+ NEELLGQIS+MR+LQ+++EL++TL+ ITS Q LT AA LIGK V G D S   +SGVVE+AF+ D +AYV + ++ + ++ +  V   A
Sbjct:   23 NALTSEDFLELLIVQLQNQDPSEPVSNEELLGQISTMRQLQADLELTETLEAITSDQLLTSAASLIGKSVAGTDVSGAGLSGVVEKAFLTDGEAYVQVDSTPMKLADVLEVASAA 137          
BLAST of mRNA_M-pyrifera_M_contig116440.3420.1 vs. uniprot
Match: A0A3B1DC02_9ZZZZ (Flagellar basal-body rod modification protein FlgD n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1DC02_9ZZZZ)

HSP 1 Score: 117 bits (293), Expect = 1.740e-31
Identity = 61/112 (54.46%), Postives = 87/112 (77.68%), Query Frame = 1
Query:    1 NGLTADNFMKLLITELQNQDPTNPMGNEELLGQISSMRELQSNIELSDTLKEITSGQSLTQAAGLIGKQVEGKDSSDNSVSGVVERAFVRDSKAYVAI-GNSEVPVSSITSV 333
            + L +++F+KLLIT+LQNQDP+ P  NE+LL QIS+MR LQSN++L DTL+ IT+ Q L+ AA  IGK V G D+++ SV+G+V RAFVRD K +V +  N+E+ +SS++SV
Sbjct:   21 SALKSEDFLKLLITQLQNQDPSEPTSNEDLLNQISAMRSLQSNLDLGDTLQSITANQQLSTAATFIGKTVTGLDANNASVTGLVTRAFVRDDKTFVEVDNNAELEISSVSSV 132          
BLAST of mRNA_M-pyrifera_M_contig116440.3420.1 vs. uniprot
Match: A0A7W0M6K0_9PLAN (Flagellar hook capping protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7W0M6K0_9PLAN)

HSP 1 Score: 116 bits (291), Expect = 3.300e-31
Identity = 59/111 (53.15%), Postives = 80/111 (72.07%), Query Frame = 1
Query:    1 NGLTADNFMKLLITELQNQDPTNPMGNEELLGQISSMRELQSNIELSDTLKEITSGQSLTQAAGLIGKQVEGKDSSDNSVSGVVERAFVRDSKAYVAIGNSEVPVSSITSV 333
            N LT+ +F+KLL+T+LQNQDPT P+GNEELL Q+S MR LQSNIEL + +K ++S Q+L+ AAG IGK V+G  S   +V+GVV+ AF+ D  AYV +    V +S +  V
Sbjct:   23 NALTSADFLKLLVTQLQNQDPTEPVGNEELLNQLSMMRSLQSNIELGEAVKSVSSNQNLSMAAGFIGKTVKGSLSDGTAVTGVVDSAFLADGAAYVKVSGQSVALSRVLEV 133          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116440.3420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517WB88_9PLAN1.690e-7098.29Basal-body rod modification protein FlgD n=5 Tax=G... [more]
A0A518A4U3_9PLAN1.060e-5780.34Flagellar basal body rod modification protein n=1 ... [more]
A0A3D3RA93_9PLAN2.910e-5580.17Basal-body rod modification protein FlgD n=7 Tax=P... [more]
A0A517WWA2_9PLAN1.500e-5273.28Flagellar basal body rod modification protein n=1 ... [more]
A0A518IAQ6_9PLAN2.130e-5275.44Flagellar basal body rod modification protein n=2 ... [more]
A0A517VZ80_9PLAN1.750e-5170.69Flagellar basal body rod modification protein n=1 ... [more]
A0A836RGQ0_9PLAN1.430e-3456.30Flagellar hook capping protein n=1 Tax=Planctomyce... [more]
A0A517R594_9BACT1.190e-3152.17Flagellar basal body rod modification protein n=1 ... [more]
A0A3B1DC02_9ZZZZ1.740e-3154.46Flagellar basal-body rod modification protein FlgD... [more]
A0A7W0M6K0_9PLAN3.300e-3153.15Flagellar hook capping protein n=1 Tax=Planctomyce... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116440contigM-pyrifera_M_contig116440:3..356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score169.5
Seed ortholog evalue8.9e-40
Seed eggNOG ortholog344747.PM8797T_01414
Preferred nameflgD
KEGG koko:K02389
KEGG Pathwayko02040,map02040
Hectar predicted targeting categoryother localisation
GOsGO:0001539,GO:0005575,GO:0005623,GO:0006928,GO:0008150,GO:0009288,GO:0009424,GO:0009987,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0044422,GO:0044461,GO:0044463,GO:0044464,GO:0048870,GO:0051179,GO:0051674,GO:0071973,GO:0071978,GO:0097588
EggNOG free text desc.Flagellar hook capping protein
EggNOG OGs2J0QK@203682,COG1843@1,COG1843@2
COG Functional cat.N
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02035
Exons1
Model size354
Cds size330
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815681.9961867-UTR-M-pyrifera_M_contig116440:2..261622815681.9961867-UTR-M-pyrifera_M_contig116440:2..26Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116440 3..26 +
1692277519.47682-UTR-M-pyrifera_M_contig116440:2..261692277519.47682-UTR-M-pyrifera_M_contig116440:2..26Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116440 3..26 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815682.0107138-CDS-M-pyrifera_M_contig116440:26..3561622815682.0107138-CDS-M-pyrifera_M_contig116440:26..356Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116440 27..356 +
1692277519.48921-CDS-M-pyrifera_M_contig116440:26..3561692277519.48921-CDS-M-pyrifera_M_contig116440:26..356Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116440 27..356 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116440.3420.1prot_M-pyrifera_M_contig116440.3420.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116440 27..356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116440.3420.1

>prot_M-pyrifera_M_contig116440.3420.1 ID=prot_M-pyrifera_M_contig116440.3420.1|Name=mRNA_M-pyrifera_M_contig116440.3420.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
MKLLITELQNQDPTNPMGNEELLGQISSMRELQSNIELSDTLKEITSGQS
LTQAAGLIGKQVEGKDSSDNSVSGVVERAFVRDSKAYVAIGNSEVPVSSI
TSVQEPASE*
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mRNA from alignment at M-pyrifera_M_contig116440:3..356+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116440.3420.1 ID=mRNA_M-pyrifera_M_contig116440.3420.1|Name=mRNA_M-pyrifera_M_contig116440.3420.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig116440:3..356+ (Macrocystis pyrifera P11B4 male)
AATGGTTTGACCGCCGATAATTTCATGAAGTTGCTGATTACCGAGTTGCA GAACCAGGATCCGACAAACCCGATGGGGAATGAAGAGCTTCTGGGACAGA TTTCCAGCATGCGGGAACTTCAGTCGAATATCGAGCTGTCAGATACGCTG AAAGAGATTACTTCCGGCCAGTCACTGACTCAGGCCGCTGGTCTGATCGG TAAGCAGGTGGAAGGCAAGGACAGTTCCGATAACTCTGTGTCCGGTGTGG TGGAACGTGCTTTCGTACGCGATAGCAAAGCCTACGTTGCCATTGGTAAT TCCGAAGTGCCGGTGTCGTCGATCACCTCGGTACAGGAACCTGCAAGTGA ATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116440:3..356+

>mRNA_M-pyrifera_M_contig116440.3420.1 ID=mRNA_M-pyrifera_M_contig116440.3420.1|Name=mRNA_M-pyrifera_M_contig116440.3420.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig116440:3..356+ (Macrocystis pyrifera P11B4 male)
ATGAAGTTGCTGATTACCGAGTTGCAGAACCAGGATCCGACAAACCCGAT
GGGGAATGAAGAGCTTCTGGGACAGATTTCCAGCATGCGGGAACTTCAGT
CGAATATCGAGCTGTCAGATACGCTGAAAGAGATTACTTCCGGCCAGTCA
CTGACTCAGGCCGCTGGTCTGATCGGTAAGCAGGTGGAAGGCAAGGACAG
TTCCGATAACTCTGTGTCCGGTGTGGTGGAACGTGCTTTCGTACGCGATA
GCAAAGCCTACGTTGCCATTGGTAATTCCGAAGTGCCGGTGTCGTCGATC
ACCTCGGTACAGGAACCTGCAAGTGAATGAATGAAGTTGCTGATTACCGA
GTTGCAGAACCAGGATCCGACAAACCCGATGGGGAATGAAGAGCTTCTGG
GACAGATTTCCAGCATGCGGGAACTTCAGTCGAATATCGAGCTGTCAGAT
ACGCTGAAAGAGATTACTTCCGGCCAGTCACTGACTCAGGCCGCTGGTCT
GATCGGTAAGCAGGTGGAAGGCAAGGACAGTTCCGATAACTCTGTGTCCG
GTGTGGTGGAACGTGCTTTCGTACGCGATAGCAAAGCCTACGTTGCCATT
GGTAATTCCGAAGTGCCGGTGTCGTCGATCACCTCGGTACAGGAACCTGC
AAGTGAATGA
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