mRNA_M-pyrifera_M_contig116434.3419.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116434.3419.1
Unique NamemRNA_M-pyrifera_M_contig116434.3419.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116434.3419.1 vs. uniprot
Match: A0A6P4YWM9_BRABE (uncharacterized protein LOC109473319 n=2 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4YWM9_BRABE)

HSP 1 Score: 72.8 bits (177), Expect = 1.370e-13
Identity = 34/73 (46.58%), Postives = 51/73 (69.86%), Query Frame = 1
Query:    1 LAVNLLFDRYPGVIGSGVIQTHFKEIRVAIKRVLLHSFFNIEHLESFFSRHKEELLSSLGLEDRMEELMTSPK 219
            LAV +LFDR PG+IGSGVI + FKEIR  +K V+L +FF  E+LE++  R   E L++  +E +++ L+ S +
Sbjct:   71 LAVKMLFDRIPGLIGSGVITSQFKEIRQTVKNVVLETFFETEYLENYMHRKSGEFLAAFQIESKLQRLLQSER 143          
BLAST of mRNA_M-pyrifera_M_contig116434.3419.1 vs. uniprot
Match: C3XUA3_BRAFL (Uncharacterized protein n=5 Tax=Branchiostoma TaxID=7737 RepID=C3XUA3_BRAFL)

HSP 1 Score: 72.8 bits (177), Expect = 2.450e-13
Identity = 34/73 (46.58%), Postives = 51/73 (69.86%), Query Frame = 1
Query:    1 LAVNLLFDRYPGVIGSGVIQTHFKEIRVAIKRVLLHSFFNIEHLESFFSRHKEELLSSLGLEDRMEELMTSPK 219
            LAV +LFDR PG+IGSGVI + FKEIR  +K V+L +FF  E+LE++  R   E L++  +E +++ L+ S +
Sbjct:  159 LAVKMLFDRIPGLIGSGVITSQFKEIRQTVKNVVLETFFETEYLENYMHRKSGEFLAAFQIESKLQRLLQSER 231          
BLAST of mRNA_M-pyrifera_M_contig116434.3419.1 vs. uniprot
Match: A0A6T6YHL9_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A6T6YHL9_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.230e-12
Identity = 32/73 (43.84%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    1 LAVNLLFDRYPGVIGSGVIQTHFKEIRVAIKRVLLHSFFNIEHLESFFSRHKEELLSSLGLEDRMEELMTSPK 219
            LAV +LFDR PG++GSGVI   FKEIR  +K  ++ +FF+ E+L+ + + H   +++SL LE RM   +  P+
Sbjct:   99 LAVKMLFDRIPGIVGSGVIPMRFKEIRETVKDTIMLTFFDREYLQGYIAAHAPRMIASLNLEQRMAAELAKPE 171          
BLAST of mRNA_M-pyrifera_M_contig116434.3419.1 vs. uniprot
Match: A0A2E9MI99_9BACT (Uncharacterized protein n=4 Tax=FCB group TaxID=1783270 RepID=A0A2E9MI99_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 3.350e-10
Identity = 32/79 (40.51%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    1 LAVNLLFDRYPGVIGSGVIQTHFKEIRVAIKRVLLHSFFNIEHLESFFSRHKEELLS-SLGLEDRMEELMTSPKGRKAL 234
            LAV +LFDR PG+ GSGV+   F+EIRV +K +++  FF+  +L+ FF  H   +   S GL  ++ EL+ S +  +A+
Sbjct:   65 LAVKMLFDRVPGLYGSGVVSARFREIRVTVKDLIMTHFFDEAYLKRFFDEHGSSMTGGSGGLTRKLRELLESEEAGRAI 143          
BLAST of mRNA_M-pyrifera_M_contig116434.3419.1 vs. uniprot
Match: A0A2E4LP66_9DELT (DUF445 domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A2E4LP66_9DELT)

HSP 1 Score: 60.1 bits (144), Expect = 4.530e-9
Identity = 25/56 (44.64%), Postives = 40/56 (71.43%), Query Frame = 1
Query:    1 LAVNLLFDRYPGVIGSGVIQTHFKEIRVAIKRVLLHSFFNIEHLESFFSRHKEELL 168
            LA+ +LF+R PG+ GSGVI  HF++ +V IK +++H FFN +++E FF   +  +L
Sbjct:   32 LAIYMLFERVPGLYGSGVILLHFEDFKVGIKELIMHQFFNRKNVEQFFDNSEGSML 87          
BLAST of mRNA_M-pyrifera_M_contig116434.3419.1 vs. uniprot
Match: A0A166X5Z3_9GAMM (Uncharacterized protein n=7 Tax=Pseudoalteromonas TaxID=53246 RepID=A0A166X5Z3_9GAMM)

HSP 1 Score: 59.7 bits (143), Expect = 6.700e-9
Identity = 28/55 (50.91%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    1 LAVNLLFDRYPGVIGSGVIQTHFKEIRVAIKRVLLHSFFNIEHLESFFSRHKEEL 165
            LAV++LF++ PG+ GSGVI   FKE +VAIK ++L  FFN + L+SF S+++ +L
Sbjct:   42 LAVHMLFEKVPGLYGSGVITIKFKEFKVAIKELILDEFFNQDKLQSFASKNQIDL 96          
BLAST of mRNA_M-pyrifera_M_contig116434.3419.1 vs. uniprot
Match: A0A432GNS5_9DELT (DUF445 domain-containing protein (Fragment) n=1 Tax=SAR324 cluster bacterium TaxID=2024889 RepID=A0A432GNS5_9DELT)

HSP 1 Score: 57.4 bits (137), Expect = 2.060e-8
Identity = 23/49 (46.94%), Postives = 36/49 (73.47%), Query Frame = 1
Query:    1 LAVNLLFDRYPGVIGSGVIQTHFKEIRVAIKRVLLHSFFNIEHLESFFS 147
            LA+ +LF+R PG+ GSGVI  HF++ +  I  +++H FFN E++E FF+
Sbjct:   61 LAIYMLFERVPGLYGSGVIPLHFEDFKTGINELIMHQFFNRENVEKFFA 109          
BLAST of mRNA_M-pyrifera_M_contig116434.3419.1 vs. uniprot
Match: A0A2D8MW56_9BACT (Uncharacterized protein n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D8MW56_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 4.640e-8
Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = 1
Query:    1 LAVNLLFDRYPGVIGSGVIQTHFKEIRVAIKRVLLHSFFNIEHLESF 141
            LAV +LFDR PG+ GSGVIQ  F EIR  IKR++L  FF  E+LE F
Sbjct:   51 LAVKMLFDRIPGLAGSGVIQHRFTEIREEIKRLILDEFFTEENLERF 97          
BLAST of mRNA_M-pyrifera_M_contig116434.3419.1 vs. uniprot
Match: A0A354Q632_9DELT (DUF445 domain-containing protein n=9 Tax=root TaxID=1 RepID=A0A354Q632_9DELT)

HSP 1 Score: 57.4 bits (137), Expect = 5.790e-8
Identity = 23/49 (46.94%), Postives = 36/49 (73.47%), Query Frame = 1
Query:    1 LAVNLLFDRYPGVIGSGVIQTHFKEIRVAIKRVLLHSFFNIEHLESFFS 147
            LA+ +LF+R PG+ GSGVI  HF++ +  I  +++H FFN E++E FF+
Sbjct:   61 LAIYMLFERVPGLYGSGVIPLHFEDFKTGINELIMHQFFNRENVEKFFA 109          
BLAST of mRNA_M-pyrifera_M_contig116434.3419.1 vs. uniprot
Match: A0A7Z9FLQ7_9PROT (DUF445 domain-containing protein n=3 Tax=Candidatus Lambdaproteobacteria bacterium TaxID=2035771 RepID=A0A7Z9FLQ7_9PROT)

HSP 1 Score: 57.4 bits (137), Expect = 5.790e-8
Identity = 23/55 (41.82%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    1 LAVNLLFDRYPGVIGSGVIQTHFKEIRVAIKRVLLHSFFNIEHLESFFSRHKEEL 165
            LA+++LF+R PG+ GSGVI  HF+  + +I  +++H FF+ E++E FF+  K  +
Sbjct:   61 LAIHMLFERVPGLYGSGVIPLHFESFKTSIHELIMHQFFSRENVEKFFADSKNSM 115          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116434.3419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P4YWM9_BRABE1.370e-1346.58uncharacterized protein LOC109473319 n=2 Tax=Branc... [more]
C3XUA3_BRAFL2.450e-1346.58Uncharacterized protein n=5 Tax=Branchiostoma TaxI... [more]
A0A6T6YHL9_9STRA1.230e-1243.84Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A2E9MI99_9BACT3.350e-1040.51Uncharacterized protein n=4 Tax=FCB group TaxID=17... [more]
A0A2E4LP66_9DELT4.530e-944.64DUF445 domain-containing protein n=2 Tax=root TaxI... [more]
A0A166X5Z3_9GAMM6.700e-950.91Uncharacterized protein n=7 Tax=Pseudoalteromonas ... [more]
A0A432GNS5_9DELT2.060e-846.94DUF445 domain-containing protein (Fragment) n=1 Ta... [more]
A0A2D8MW56_9BACT4.640e-861.70Uncharacterized protein n=2 Tax=Planctomycetes bac... [more]
A0A354Q632_9DELT5.790e-846.94DUF445 domain-containing protein n=9 Tax=root TaxI... [more]
A0A7Z9FLQ7_9PROT5.790e-841.82DUF445 domain-containing protein n=3 Tax=Candidatu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116434contigM-pyrifera_M_contig116434:327..560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score74.3
Seed ortholog evalue2.8e-11
Seed eggNOG ortholog7739.XP_002612468.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2BXPT@1,2S2FN@2759,3A47Z@33154,3BRP9@33208,3DGS5@33213
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815681.965267-CDS-M-pyrifera_M_contig116434:326..5601622815681.965267-CDS-M-pyrifera_M_contig116434:326..560Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116434 327..560 -
1692277519.4649866-CDS-M-pyrifera_M_contig116434:326..5601692277519.4649866-CDS-M-pyrifera_M_contig116434:326..560Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116434 327..560 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116434.3419.1prot_M-pyrifera_M_contig116434.3419.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116434 327..560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116434.3419.1

>prot_M-pyrifera_M_contig116434.3419.1 ID=prot_M-pyrifera_M_contig116434.3419.1|Name=mRNA_M-pyrifera_M_contig116434.3419.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=78bp
LAVNLLFDRYPGVIGSGVIQTHFKEIRVAIKRVLLHSFFNIEHLESFFSR
HKEELLSSLGLEDRMEELMTSPKGRKAL
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mRNA from alignment at M-pyrifera_M_contig116434:327..560-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116434.3419.1 ID=mRNA_M-pyrifera_M_contig116434.3419.1|Name=mRNA_M-pyrifera_M_contig116434.3419.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig116434:327..560- (Macrocystis pyrifera P11B4 male)
CTCGCGGTGAATTTGCTGTTCGACAGGTACCCTGGAGTGATAGGGAGTGG GGTGATTCAGACGCACTTCAAGGAGATCCGCGTAGCGATCAAGCGCGTGC TTCTGCACTCGTTCTTCAACATCGAGCATTTGGAGAGTTTCTTCTCGCGA CACAAGGAAGAGTTGCTTTCTTCTCTGGGATTGGAAGACCGCATGGAAGA GTTGATGACTTCCCCAAAGGGCAGGAAGGCACTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116434:327..560-

>mRNA_M-pyrifera_M_contig116434.3419.1 ID=mRNA_M-pyrifera_M_contig116434.3419.1|Name=mRNA_M-pyrifera_M_contig116434.3419.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig116434:327..560- (Macrocystis pyrifera P11B4 male)
CTCGCGGTGAATTTGCTGTTCGACAGGTACCCTGGAGTGATAGGGAGTGG
GGTGATTCAGACGCACTTCAAGGAGATCCGCGTAGCGATCAAGCGCGTGC
TTCTGCACTCGTTCTTCAACATCGAGCATTTGGAGAGTTTCTTCTCGCGA
CACAAGGAAGAGTTGCTTTCTTCTCTGGGATTGGAAGACCGCATGGAAGA
GTTGATGACTTCCCCAAAGGGCAGGAAGGCACTCCTCGCGGTGAATTTGC
TGTTCGACAGGTACCCTGGAGTGATAGGGAGTGGGGTGATTCAGACGCAC
TTCAAGGAGATCCGCGTAGCGATCAAGCGCGTGCTTCTGCACTCGTTCTT
CAACATCGAGCATTTGGAGAGTTTCTTCTCGCGACACAAGGAAGAGTTGC
TTTCTTCTCTGGGATTGGAAGACCGCATGGAAGAGTTGATGACTTCCCCA
AAGGGCAGGAAGGCACTC
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