mRNA_M-pyrifera_M_contig116433.3418.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116433.3418.1
Unique NamemRNA_M-pyrifera_M_contig116433.3418.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig116433.3418.1 vs. uniprot
Match: A0A5A8D8N9_CAFRO (MFS domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D8N9_CAFRO)

HSP 1 Score: 79.0 bits (193), Expect = 4.690e-15
Identity = 43/82 (52.44%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:    1 SAACYALYGAAQSAWWVYAAQVCTVMQHGMMAARTYISRTSESDHSLDALLGNTVVAYQVATVLGPALGGLTAELYP-RAPA 243
            SA CY +Y  A  AWW+YAAQV T++QHGM+A+RTY+S  + SD   + LLG T  AY    ++GPALGG  A+    RAPA
Sbjct:   79 SAVCYGMYYVAPDAWWLYAAQVPTLLQHGMLASRTYLSVHANSDQQRETLLGMTRFAYGAGMMVGPALGGWLADSVDLRAPA 160
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116433.3418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5A8D8N9_CAFRO4.690e-1552.44MFS domain-containing protein n=4 Tax=Cafeteria ro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116433contigM-pyrifera_M_contig116433:2..304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815681.928506-CDS-M-pyrifera_M_contig116433:1..3041622815681.928506-CDS-M-pyrifera_M_contig116433:1..304Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116433 2..304 +
1692277519.4548075-CDS-M-pyrifera_M_contig116433:1..3041692277519.4548075-CDS-M-pyrifera_M_contig116433:1..304Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116433 2..304 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116433.3418.1prot_M-pyrifera_M_contig116433.3418.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116433 2..304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116433.3418.1

>prot_M-pyrifera_M_contig116433.3418.1 ID=prot_M-pyrifera_M_contig116433.3418.1|Name=mRNA_M-pyrifera_M_contig116433.3418.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
SAACYALYGAAQSAWWVYAAQVCTVMQHGMMAARTYISRTSESDHSLDAL
LGNTVVAYQVATVLGPALGGLTAELYPRAPAVAALLLSLLALLITITLLK
D
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mRNA from alignment at M-pyrifera_M_contig116433:2..304+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116433.3418.1 ID=mRNA_M-pyrifera_M_contig116433.3418.1|Name=mRNA_M-pyrifera_M_contig116433.3418.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=303bp|location=Sequence derived from alignment at M-pyrifera_M_contig116433:2..304+ (Macrocystis pyrifera P11B4 male)
TCTGCAGCGTGCTATGCGCTGTACGGAGCCGCCCAGAGCGCGTGGTGGGT
GTACGCAGCGCAAGTGTGCACCGTGATGCAGCACGGGATGATGGCTGCTC
GCACCTACATCTCCCGCACCTCTGAATCTGACCACAGCCTGGACGCGCTT
CTGGGCAATACAGTGGTAGCATACCAAGTGGCAACAGTACTAGGACCTGC
TCTGGGAGGCCTCACTGCAGAACTCTACCCTCGCGCACCCGCAGTCGCCG
CCCTCCTCCTCTCCCTCCTCGCTCTTCTCATCACCATCACACTCCTCAAA
GAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116433:2..304+

>mRNA_M-pyrifera_M_contig116433.3418.1 ID=mRNA_M-pyrifera_M_contig116433.3418.1|Name=mRNA_M-pyrifera_M_contig116433.3418.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig116433:2..304+ (Macrocystis pyrifera P11B4 male)
TCTGCAGCGTGCTATGCGCTGTACGGAGCCGCCCAGAGCGCGTGGTGGGT
GTACGCAGCGCAAGTGTGCACCGTGATGCAGCACGGGATGATGGCTGCTC
GCACCTACATCTCCCGCACCTCTGAATCTGACCACAGCCTGGACGCGCTT
CTGGGCAATACAGTGGTAGCATACCAAGTGGCAACAGTACTAGGACCTGC
TCTGGGAGGCCTCACTGCAGAACTCTACCCTCGCGCACCCGCAGTCGCCG
CCCTCCTCCTCTCCCTCCTCGCTCTTCTCATCACCATCACACTCCTCAAA
GATTCTGCAGCGTGCTATGCGCTGTACGGAGCCGCCCAGAGCGCGTGGTG
GGTGTACGCAGCGCAAGTGTGCACCGTGATGCAGCACGGGATGATGGCTG
CTCGCACCTACATCTCCCGCACCTCTGAATCTGACCACAGCCTGGACGCG
CTTCTGGGCAATACAGTGGTAGCATACCAAGTGGCAACAGTACTAGGACC
TGCTCTGGGAGGCCTCACTGCAGAACTCTACCCTCGCGCACCCGCAGTCG
CCGCCCTCCTCCTCTCCCTCCTCGCTCTTCTCATCACCATCACACTCCTC
AAAGAT
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