mRNA_M-pyrifera_M_contig116403.3408.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116403.3408.1
Unique NamemRNA_M-pyrifera_M_contig116403.3408.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig116403.3408.1 vs. uniprot
Match: A0A6J8AAF9_MYTCO (AIG1-type G domain-containing protein n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8AAF9_MYTCO)

HSP 1 Score: 53.5 bits (127), Expect = 1.450e-5
Identity = 29/102 (28.43%), Postives = 55/102 (53.92%), Query Frame = 1 
Query:  139 RLHIADTAGFHDTDGSEKKEKEIETQAQKALLLLAGRLDVCLLLVPLSAAGRFNKDRRKALERAAVLFTHDIYKRTIVVFTHCDDLINDHLQRREKLSPAEF 444
            ++ + DT G  DTD   +  + I+ + +++++L +      LL + ++   RF K+    LE     F  ++ K  +V+FTH D L+ DH+Q+ EK +  +F
Sbjct:   56 KIDVVDTPGVFDTD---QDNETIQREVKRSIILSSPGPHAILLCIRVA---RFTKEDIDTLEHFVRYFGKEMLKYVVVIFTHLDQLLEDHMQQNEKQTKEDF 151
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116403.3408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6J8AAF9_MYTCO1.450e-528.43AIG1-type G domain-containing protein n=1 Tax=Myti... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116403contigM-pyrifera_M_contig116403:68..520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size453
Cds size453
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815681.4914668-CDS-M-pyrifera_M_contig116403:67..5201622815681.4914668-CDS-M-pyrifera_M_contig116403:67..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116403 68..520 +
1692277519.2874708-CDS-M-pyrifera_M_contig116403:67..5201692277519.2874708-CDS-M-pyrifera_M_contig116403:67..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116403 68..520 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116403.3408.1prot_M-pyrifera_M_contig116403.3408.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116403 68..520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116403.3408.1

>prot_M-pyrifera_M_contig116403.3408.1 ID=prot_M-pyrifera_M_contig116403.3408.1|Name=mRNA_M-pyrifera_M_contig116403.3408.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=151bp
VVPIQRGGAASSHPKVRIAGSEAEGGGGEDNSSEGADDTSKRTLPVRLHI
ADTAGFHDTDGSEKKEKEIETQAQKALLLLAGRLDVCLLLVPLSAAGRFN
KDRRKALERAAVLFTHDIYKRTIVVFTHCDDLINDHLQRREKLSPAEFKK
K
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mRNA from alignment at M-pyrifera_M_contig116403:68..520+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116403.3408.1 ID=mRNA_M-pyrifera_M_contig116403.3408.1|Name=mRNA_M-pyrifera_M_contig116403.3408.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=453bp|location=Sequence derived from alignment at M-pyrifera_M_contig116403:68..520+ (Macrocystis pyrifera P11B4 male)
GTTGTCCCCATCCAACGTGGTGGAGCAGCATCTTCCCACCCAAAAGTACG
CATTGCGGGTAGTGAAGCAGAAGGTGGGGGTGGGGAAGATAACTCTAGTG
AAGGTGCAGATGACACTTCAAAACGAACTTTGCCTGTCCGTCTCCACATT
GCGGACACAGCTGGGTTTCATGACACAGATGGAAGCGAGAAAAAGGAAAA
GGAAATAGAAACTCAAGCGCAAAAGGCGCTTCTTCTCCTGGCTGGTCGCC
TAGATGTTTGCTTGCTCCTTGTACCATTGTCAGCAGCTGGGCGTTTCAAC
AAAGACAGACGGAAGGCGTTGGAGCGAGCAGCGGTTCTGTTTACACATGA
CATTTACAAACGCACAATTGTTGTGTTTACGCATTGCGACGATCTCATCA
ATGACCACCTCCAGCGACGTGAGAAACTCTCTCCAGCAGAGTTCAAGAAA
AAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116403:68..520+

>mRNA_M-pyrifera_M_contig116403.3408.1 ID=mRNA_M-pyrifera_M_contig116403.3408.1|Name=mRNA_M-pyrifera_M_contig116403.3408.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=906bp|location=Sequence derived from alignment at M-pyrifera_M_contig116403:68..520+ (Macrocystis pyrifera P11B4 male)
GTTGTCCCCATCCAACGTGGTGGAGCAGCATCTTCCCACCCAAAAGTACG
CATTGCGGGTAGTGAAGCAGAAGGTGGGGGTGGGGAAGATAACTCTAGTG
AAGGTGCAGATGACACTTCAAAACGAACTTTGCCTGTCCGTCTCCACATT
GCGGACACAGCTGGGTTTCATGACACAGATGGAAGCGAGAAAAAGGAAAA
GGAAATAGAAACTCAAGCGCAAAAGGCGCTTCTTCTCCTGGCTGGTCGCC
TAGATGTTTGCTTGCTCCTTGTACCATTGTCAGCAGCTGGGCGTTTCAAC
AAAGACAGACGGAAGGCGTTGGAGCGAGCAGCGGTTCTGTTTACACATGA
CATTTACAAACGCACAATTGTTGTGTTTACGCATTGCGACGATCTCATCA
ATGACCACCTCCAGCGACGTGAGAAACTCTCTCCAGCAGAGTTCAAGAAA
AAAGTTGTCCCCATCCAACGTGGTGGAGCAGCATCTTCCCACCCAAAAGT
ACGCATTGCGGGTAGTGAAGCAGAAGGTGGGGGTGGGGAAGATAACTCTA
GTGAAGGTGCAGATGACACTTCAAAACGAACTTTGCCTGTCCGTCTCCAC
ATTGCGGACACAGCTGGGTTTCATGACACAGATGGAAGCGAGAAAAAGGA
AAAGGAAATAGAAACTCAAGCGCAAAAGGCGCTTCTTCTCCTGGCTGGTC
GCCTAGATGTTTGCTTGCTCCTTGTACCATTGTCAGCAGCTGGGCGTTTC
AACAAAGACAGACGGAAGGCGTTGGAGCGAGCAGCGGTTCTGTTTACACA
TGACATTTACAAACGCACAATTGTTGTGTTTACGCATTGCGACGATCTCA
TCAATGACCACCTCCAGCGACGTGAGAAACTCTCTCCAGCAGAGTTCAAG
AAAAAA
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