mRNA_M-pyrifera_M_contig116378.3398.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116378.3398.1
Unique NamemRNA_M-pyrifera_M_contig116378.3398.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig116378.3398.1 vs. uniprot
Match: A0A2D7NJY8_9PLAN (FHA domain-containing protein n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A2D7NJY8_9PLAN)

HSP 1 Score: 56.6 bits (135), Expect = 5.810e-7
Identity = 44/117 (37.61%), Postives = 55/117 (47.01%), Query Frame = 1 
Query:    1 PSRSPAAAEQVRVADGCVVGRSSSCAVHVRDLSCSNHHAVFRATAQAQAVASGANARELRAAPAVGAPAYTWRVQDLGSTHGTFVNGERVSARRESGDRA-VSAGDTLRCGTVEWQV 348
            P RS   +  +  A G VVGR   CA  + D S S HHA FR +A                          W ++DL STHGTFV G RV    ++G+   VS GD +R GTVE+ V
Sbjct:   74 PVRSGERSSSITEASG-VVGREDDCAAVLDDQSVSRHHAHFRGSAAG------------------------WMIEDLRSTHGTFVGGVRV----DTGESVLVSQGDLVRFGTVEFLV 161
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BLAST of mRNA_M-pyrifera_M_contig116378.3398.1 vs. uniprot
Match: A0A533RRM1_9ACTN (FHA domain-containing protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A533RRM1_9ACTN)

HSP 1 Score: 50.8 bits (120), Expect = 1.530e-5
Identity = 34/96 (35.42%), Postives = 44/96 (45.83%), Query Frame = 1 
Query:   52 VVGRSSSCAVHVRDLSCSNHHAVFRATAQAQAVASGANARELRAAPAVGAPAYTWRVQDLGSTHGTFVNGERVSARRESGDRAVSAGDTLRCGTVE 339
            VVGR + C VH++D + S  HA F        VA GA                 W ++DLGST+GT+VNGER    R      +  GD +  G  E
Sbjct:   65 VVGRLAECDVHIQDANISRQHAAF--------VAEGAG----------------WAIEDLGSTNGTYVNGERAGHLR------LRDGDVVTIGVTE 130
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116378.3398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2D7NJY8_9PLAN5.810e-737.61FHA domain-containing protein n=2 Tax=Planctomycet... [more]
A0A533RRM1_9ACTN1.530e-535.42FHA domain-containing protein (Fragment) n=1 Tax=A... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116378contigM-pyrifera_M_contig116378:76..423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size348
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815680.964204-CDS-M-pyrifera_M_contig116378:75..4231622815680.964204-CDS-M-pyrifera_M_contig116378:75..423Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116378 76..423 +
1692277519.0346813-CDS-M-pyrifera_M_contig116378:75..4231692277519.0346813-CDS-M-pyrifera_M_contig116378:75..423Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116378 76..423 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116378.3398.1prot_M-pyrifera_M_contig116378.3398.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116378 76..423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116378.3398.1

>prot_M-pyrifera_M_contig116378.3398.1 ID=prot_M-pyrifera_M_contig116378.3398.1|Name=mRNA_M-pyrifera_M_contig116378.3398.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
PSRSPAAAEQVRVADGCVVGRSSSCAVHVRDLSCSNHHAVFRATAQAQAV
ASGANARELRAAPAVGAPAYTWRVQDLGSTHGTFVNGERVSARRESGDRA
VSAGDTLRCGTVEWQV
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mRNA from alignment at M-pyrifera_M_contig116378:76..423+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116378.3398.1 ID=mRNA_M-pyrifera_M_contig116378.3398.1|Name=mRNA_M-pyrifera_M_contig116378.3398.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig116378:76..423+ (Macrocystis pyrifera P11B4 male)
CCCTCGCGGTCACCGGCTGCTGCGGAGCAGGTGCGCGTCGCCGACGGCTG
CGTGGTGGGCCGCAGCTCGTCGTGCGCAGTGCACGTTCGCGACTTGAGCT
GCTCCAACCACCACGCGGTTTTCCGCGCAACTGCACAAGCGCAAGCAGTC
GCATCAGGCGCAAATGCACGAGAACTGCGAGCCGCGCCTGCTGTTGGGGC
GCCTGCGTACACGTGGAGGGTCCAGGACCTGGGCAGCACGCACGGGACGT
TCGTGAACGGCGAGCGGGTTTCTGCACGGCGAGAGAGCGGTGACAGGGCT
GTGTCTGCGGGAGACACGCTCCGCTGTGGGACCGTGGAGTGGCAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116378:76..423+

>mRNA_M-pyrifera_M_contig116378.3398.1 ID=mRNA_M-pyrifera_M_contig116378.3398.1|Name=mRNA_M-pyrifera_M_contig116378.3398.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig116378:76..423+ (Macrocystis pyrifera P11B4 male)
CCCTCGCGGTCACCGGCTGCTGCGGAGCAGGTGCGCGTCGCCGACGGCTG
CGTGGTGGGCCGCAGCTCGTCGTGCGCAGTGCACGTTCGCGACTTGAGCT
GCTCCAACCACCACGCGGTTTTCCGCGCAACTGCACAAGCGCAAGCAGTC
GCATCAGGCGCAAATGCACGAGAACTGCGAGCCGCGCCTGCTGTTGGGGC
GCCTGCGTACACGTGGAGGGTCCAGGACCTGGGCAGCACGCACGGGACGT
TCGTGAACGGCGAGCGGGTTTCTGCACGGCGAGAGAGCGGTGACAGGGCT
GTGTCTGCGGGAGACACGCTCCGCTGTGGGACCGTGGAGTGGCAGGTGCC
CTCGCGGTCACCGGCTGCTGCGGAGCAGGTGCGCGTCGCCGACGGCTGCG
TGGTGGGCCGCAGCTCGTCGTGCGCAGTGCACGTTCGCGACTTGAGCTGC
TCCAACCACCACGCGGTTTTCCGCGCAACTGCACAAGCGCAAGCAGTCGC
ATCAGGCGCAAATGCACGAGAACTGCGAGCCGCGCCTGCTGTTGGGGCGC
CTGCGTACACGTGGAGGGTCCAGGACCTGGGCAGCACGCACGGGACGTTC
GTGAACGGCGAGCGGGTTTCTGCACGGCGAGAGAGCGGTGACAGGGCTGT
GTCTGCGGGAGACACGCTCCGCTGTGGGACCGTGGAGTGGCAGGTG
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