mRNA_M-pyrifera_M_contig116350.3388.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116350.3388.1
Unique NamemRNA_M-pyrifera_M_contig116350.3388.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig116350.3388.1 vs. uniprot
Match: A0A350PFA3_9BACT (Uncharacterized protein n=4 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A350PFA3_9BACT)

HSP 1 Score: 132 bits (331), Expect = 5.410e-36
Identity = 69/150 (46.00%), Postives = 100/150 (66.67%), Query Frame = 1 
Query:    1 LRIESDPFERIHLYRRSLNKIKQTVQPISKAVCKNLVNEFLDGKRNWFKGINFVDVVPFEPDQTLVEINKIETDEELEEKKRKTIIICIGSFFISIFSAIYMFNNIDNMSEMSFKTFGWVMGGVIGGIVLFIYLIFDYFEIRREIINRRK 450
            +RIE     + HLY   L+KIKQ+VQP+SK +CK LV++FL G +NW KGI F ++ PFEP        K  + EELE+ +RK++++ IGS  IS+ +  YM++  +NM +M  + +   MGG I G+ LF+Y IFD+FEIR E IN++K
Sbjct:   46 IRIEIYGLNKFHLYVEKLHKIKQSVQPVSKNICKKLVSDFLGGNKNWDKGIRFTEIEPFEPKVEKEIPFKKRSLEELEDIERKSLVLLIGSLLISLGAGFYMYSKWNNMIDMDVRIYSLGMGGAIFGLGLFVYTIFDFFEIRDE-INKKK 194
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116350.3388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A350PFA3_9BACT5.410e-3646.00Uncharacterized protein n=4 Tax=Bacteroidetes/Chlo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116350contigM-pyrifera_M_contig116350:21..476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size456
Cds size456
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815680.492737-CDS-M-pyrifera_M_contig116350:20..4761622815680.492737-CDS-M-pyrifera_M_contig116350:20..476Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116350 21..476 +
1692277518.880642-CDS-M-pyrifera_M_contig116350:20..4761692277518.880642-CDS-M-pyrifera_M_contig116350:20..476Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116350 21..476 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116350.3388.1prot_M-pyrifera_M_contig116350.3388.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116350 21..476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116350.3388.1

>prot_M-pyrifera_M_contig116350.3388.1 ID=prot_M-pyrifera_M_contig116350.3388.1|Name=mRNA_M-pyrifera_M_contig116350.3388.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=152bp
LRIESDPFERIHLYRRSLNKIKQTVQPISKAVCKNLVNEFLDGKRNWFKG
INFVDVVPFEPDQTLVEINKIETDEELEEKKRKTIIICIGSFFISIFSAI
YMFNNIDNMSEMSFKTFGWVMGGVIGGIVLFIYLIFDYFEIRREIINRRK
R*
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mRNA from alignment at M-pyrifera_M_contig116350:21..476+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116350.3388.1 ID=mRNA_M-pyrifera_M_contig116350.3388.1|Name=mRNA_M-pyrifera_M_contig116350.3388.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig116350:21..476+ (Macrocystis pyrifera P11B4 male)
CTAAGAATAGAATCTGATCCTTTTGAAAGAATTCATCTTTACAGAAGAAG
CCTAAATAAAATAAAACAAACCGTACAGCCAATTTCTAAAGCTGTTTGTA
AGAATTTAGTAAATGAATTTTTAGATGGAAAAAGAAATTGGTTTAAAGGA
ATTAACTTTGTTGATGTTGTGCCTTTTGAACCGGATCAAACTTTAGTTGA
AATAAATAAAATAGAGACCGATGAGGAGTTAGAAGAAAAAAAGAGAAAAA
CGATCATTATTTGTATAGGTAGCTTTTTTATAAGTATTTTTTCTGCGATA
TATATGTTTAATAATATTGATAATATGAGTGAAATGAGTTTCAAAACTTT
TGGTTGGGTAATGGGTGGAGTAATCGGTGGGATCGTCTTATTTATATATC
TGATATTTGATTACTTTGAAATTAGAAGAGAAATAATTAATAGAAGAAAA
AGATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116350:21..476+

>mRNA_M-pyrifera_M_contig116350.3388.1 ID=mRNA_M-pyrifera_M_contig116350.3388.1|Name=mRNA_M-pyrifera_M_contig116350.3388.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=912bp|location=Sequence derived from alignment at M-pyrifera_M_contig116350:21..476+ (Macrocystis pyrifera P11B4 male)
CTAAGAATAGAATCTGATCCTTTTGAAAGAATTCATCTTTACAGAAGAAG
CCTAAATAAAATAAAACAAACCGTACAGCCAATTTCTAAAGCTGTTTGTA
AGAATTTAGTAAATGAATTTTTAGATGGAAAAAGAAATTGGTTTAAAGGA
ATTAACTTTGTTGATGTTGTGCCTTTTGAACCGGATCAAACTTTAGTTGA
AATAAATAAAATAGAGACCGATGAGGAGTTAGAAGAAAAAAAGAGAAAAA
CGATCATTATTTGTATAGGTAGCTTTTTTATAAGTATTTTTTCTGCGATA
TATATGTTTAATAATATTGATAATATGAGTGAAATGAGTTTCAAAACTTT
TGGTTGGGTAATGGGTGGAGTAATCGGTGGGATCGTCTTATTTATATATC
TGATATTTGATTACTTTGAAATTAGAAGAGAAATAATTAATAGAAGAAAA
AGATAACTAAGAATAGAATCTGATCCTTTTGAAAGAATTCATCTTTACAG
AAGAAGCCTAAATAAAATAAAACAAACCGTACAGCCAATTTCTAAAGCTG
TTTGTAAGAATTTAGTAAATGAATTTTTAGATGGAAAAAGAAATTGGTTT
AAAGGAATTAACTTTGTTGATGTTGTGCCTTTTGAACCGGATCAAACTTT
AGTTGAAATAAATAAAATAGAGACCGATGAGGAGTTAGAAGAAAAAAAGA
GAAAAACGATCATTATTTGTATAGGTAGCTTTTTTATAAGTATTTTTTCT
GCGATATATATGTTTAATAATATTGATAATATGAGTGAAATGAGTTTCAA
AACTTTTGGTTGGGTAATGGGTGGAGTAATCGGTGGGATCGTCTTATTTA
TATATCTGATATTTGATTACTTTGAAATTAGAAGAGAAATAATTAATAGA
AGAAAAAGATAA
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