mRNA_M-pyrifera_M_contig116254.3375.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116254.3375.1
Unique NamemRNA_M-pyrifera_M_contig116254.3375.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116254.3375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116254contigM-pyrifera_M_contig116254:249..560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.8
Seed ortholog evalue4.2e-07
Seed eggNOG ortholog1123242.JH636436_gene488
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transferase activity, transferring glycosyl groups
EggNOG OGsCOG0438@1,COG0438@2
COG Functional cat.M
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size312
Cds size312
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.533118-CDS-M-pyrifera_M_contig116254:248..5601622815679.533118-CDS-M-pyrifera_M_contig116254:248..560Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116254 249..560 +
1692277518.3617384-CDS-M-pyrifera_M_contig116254:248..5601692277518.3617384-CDS-M-pyrifera_M_contig116254:248..560Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116254 249..560 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116254.3375.1prot_M-pyrifera_M_contig116254.3375.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116254 249..560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116254.3375.1

>prot_M-pyrifera_M_contig116254.3375.1 ID=prot_M-pyrifera_M_contig116254.3375.1|Name=mRNA_M-pyrifera_M_contig116254.3375.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
MTAHQETQQPIITLIANPYSVHVLRWLQLFEKAGIEVRIKSPERKQEGGP
TNVPIEHLAPGWVPGPSFMRYRRAGRVARQRPRQEGEILHAHCTSGSGYT
ALLS
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mRNA from alignment at M-pyrifera_M_contig116254:249..560+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116254.3375.1 ID=mRNA_M-pyrifera_M_contig116254.3375.1|Name=mRNA_M-pyrifera_M_contig116254.3375.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig116254:249..560+ (Macrocystis pyrifera P11B4 male)
ATGACTGCTCACCAAGAGACACAGCAACCGATCATCACTCTCATCGCGAA
CCCGTATAGTGTGCACGTCCTGCGATGGCTGCAACTGTTCGAGAAGGCGG
GAATCGAGGTGCGGATCAAATCACCGGAGCGAAAGCAAGAGGGCGGCCCG
ACGAACGTGCCGATCGAGCATCTGGCTCCCGGCTGGGTACCCGGTCCGTC
GTTCATGCGATACCGCCGAGCCGGTCGAGTGGCACGTCAGCGGCCACGAC
AGGAGGGTGAGATCTTGCACGCCCATTGCACGTCCGGCAGTGGTTACACC
GCCCTGCTGAGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116254:249..560+

>mRNA_M-pyrifera_M_contig116254.3375.1 ID=mRNA_M-pyrifera_M_contig116254.3375.1|Name=mRNA_M-pyrifera_M_contig116254.3375.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig116254:249..560+ (Macrocystis pyrifera P11B4 male)
ATGACTGCTCACCAAGAGACACAGCAACCGATCATCACTCTCATCGCGAA
CCCGTATAGTGTGCACGTCCTGCGATGGCTGCAACTGTTCGAGAAGGCGG
GAATCGAGGTGCGGATCAAATCACCGGAGCGAAAGCAAGAGGGCGGCCCG
ACGAACGTGCCGATCGAGCATCTGGCTCCCGGCTGGGTACCCGGTCCGTC
GTTCATGCGATACCGCCGAGCCGGTCGAGTGGCACGTCAGCGGCCACGAC
AGGAGGGTGAGATCTTGCACGCCCATTGCACGTCCGGCAGTGGTTACACC
GCCCTGCTGAGCATGACTGCTCACCAAGAGACACAGCAACCGATCATCAC
TCTCATCGCGAACCCGTATAGTGTGCACGTCCTGCGATGGCTGCAACTGT
TCGAGAAGGCGGGAATCGAGGTGCGGATCAAATCACCGGAGCGAAAGCAA
GAGGGCGGCCCGACGAACGTGCCGATCGAGCATCTGGCTCCCGGCTGGGT
ACCCGGTCCGTCGTTCATGCGATACCGCCGAGCCGGTCGAGTGGCACGTC
AGCGGCCACGACAGGAGGGTGAGATCTTGCACGCCCATTGCACGTCCGGC
AGTGGTTACACCGCCCTGCTGAGC
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