mRNA_M-pyrifera_M_contig11625.3373.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11625.3373.1
Unique NamemRNA_M-pyrifera_M_contig11625.3373.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig11625.3373.1 vs. uniprot
Match: D7FKY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKY0_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 2.660e-42
Identity = 67/109 (61.47%), Postives = 84/109 (77.06%), Query Frame = 1
Query:    1 PETKQTSYLFKCAEQDGDLRIGAFIQKAFDWYCKAMECTEDNSRYLYTLISTSGLPKSSGGGDGSDGEGPVRKYKRYKLSDGKDFSSLFFPEKEAMLKLLEHFANKSGE 327
            P  +QT+Y F+C+E+DGD RI  F+QKAF WYC+ M+ TED  RYLYTLI+      S+G      GEGPVRKYKRY+LSDGKDF SLFFPEK+A+L++L+HF +KSGE
Sbjct:   18 PRRQQTTYHFRCSERDGDERIDEFVQKAFRWYCEEMKSTEDQGRYLYTLIANEEFASSAGK---DKGEGPVRKYKRYRLSDGKDFDSLFFPEKDALLRILQHFEDKSGE 123          
BLAST of mRNA_M-pyrifera_M_contig11625.3373.1 vs. uniprot
Match: D8LH94_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH94_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 1.890e-36
Identity = 65/106 (61.32%), Postives = 83/106 (78.30%), Query Frame = 1
Query:   10 KQTSYLFKCAEQDGDLRIGAFIQKAFDWYCKAMECTEDNSRYLYTLISTSGLPKSSGGGDGSDGEGPVRKYKRYKLSDGKDFSSLFFPEKEAMLKLLEHFANKSGE 327
            K+T+Y F+C+E+DGD RI  F+QKAF WYC+ M+ TED  RYLYTLI+      S+G      GEGPVRKYKRY+LSDGKDF SLFFPEK+A+L++L+HF +KSG+
Sbjct:  183 KKTTYHFRCSERDGDERIDEFVQKAFRWYCEEMKSTEDQGRYLYTLIANEEFASSAGK---DKGEGPVRKYKRYRLSDGKDFDSLFFPEKDALLRILQHFEDKSGK 285          
BLAST of mRNA_M-pyrifera_M_contig11625.3373.1 vs. uniprot
Match: D7FQ72_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ72_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 2.210e-22
Identity = 57/121 (47.11%), Postives = 72/121 (59.50%), Query Frame = 1
Query:    1 PETKQTSYLFKCAEQDGDLRIGAFIQKAFDWYCKAMECTEDNSRYLYTLISTSGLPKSSGGG----DG-SDGEG-PVRK-------YKRYKLSDGKDFSSLFFPEKEAMLKLLEHFANKSG 324
            P      Y F+CA  +G+ ++  FI  A+ WY K ME TEDN+RY+Y+L++    PK  G      DG  D EG PV+K       YKRYKL D KDF SLFFPEKE +L+ LE+F  K G
Sbjct:  175 PPPTIVDYTFRCAGPEGNEKVKNFITDAYAWYTKEMESTEDNARYMYSLVAAKEPPKKKGASARYPDGMEDEEGHPVKKEDSSPIIYKRYKLGDVKDFDSLFFPEKEQLLRALENFEAKRG 295          
BLAST of mRNA_M-pyrifera_M_contig11625.3373.1 vs. uniprot
Match: A0A6H5K8D9_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D9_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 9.550e-21
Identity = 53/115 (46.09%), Postives = 72/115 (62.61%), Query Frame = 1
Query:   22 YLFKCAEQDGDLRIGAFIQKAFDWYCKAMECTEDNSRYLYTLISTSGLPKSSGG-------GDGSDGEG-------PVRKYKRYKLSDGKDFSSLFFPEKEAMLKLLEHFANKSG 324
            Y F+C  Q G++++  FIQKA++WY   M+ TED+SRY+Y+LI+     +S  G       G   DG G       P+R YKRY+L D KDF SLFFPEKE +L++LE+F  K G
Sbjct:  244 YDFRCDRQGGNIKVKDFIQKAYEWYTDEMKSTEDHSRYMYSLIAQPEPARSRLGIGGVEFPGMNGDGRGRNPLDPSPLR-YKRYRLGDVKDFDSLFFPEKEQLLRVLENFEAKRG 357          
BLAST of mRNA_M-pyrifera_M_contig11625.3373.1 vs. uniprot
Match: A0A7R9U422_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U422_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.730e-20
Identity = 49/100 (49.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:   28 FKCAEQDGDLRIGAFIQKAFDWYCKAMECTEDNSRYLYTLISTSGLPKSSGGGDGSDGEGPVRKYKRYKLSDGKDFSSLFFPEKEAMLKLLEHFANKSGE 327
            F+ A  +GD  I A+I+KAF+WY   ME  +DNSRY+Y L      P ++   +    +   RKYKRYKLS+ K FS+LFFPEKE +LKL+EHF  K+G+
Sbjct:  218 FRTALPNGDEVINAWIEKAFEWYVDEMEKLQDNSRYMYVLA-----PDATSLSNNDSQDDNQRKYKRYKLSEEKTFSALFFPEKEQLLKLMEHFQAKTGK 312          
BLAST of mRNA_M-pyrifera_M_contig11625.3373.1 vs. uniprot
Match: A0A7S1U3S3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3S3_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.180e-20
Identity = 49/100 (49.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:   28 FKCAEQDGDLRIGAFIQKAFDWYCKAMECTEDNSRYLYTLISTSGLPKSSGGGDGSDGEGPVRKYKRYKLSDGKDFSSLFFPEKEAMLKLLEHFANKSGE 327
            F+   ++GD  I A+I KAF WY + ME  +D+SRY+Y L + +     S   +G+DG+   RKYKRYKLS+ K F++LFFPEK+ +LKLLEHF  K+G+
Sbjct:  223 FRTKLRNGDEVINAWIDKAFQWYIQEMEKLQDDSRYMYVLCADA--TSISNNDEGNDGQ---RKYKRYKLSEEKTFNALFFPEKDQLLKLLEHFQAKTGK 317          
BLAST of mRNA_M-pyrifera_M_contig11625.3373.1 vs. uniprot
Match: A0A7S2MPL9_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2MPL9_9EUKA)

HSP 1 Score: 89.0 bits (219), Expect = 2.500e-18
Identity = 45/108 (41.67%), Postives = 68/108 (62.96%), Query Frame = 1
Query:    4 ETKQTSYLFKCAEQDGDLRIGAFIQKAFDWYCKAMECTEDNSRYLYTLISTSGLPKSSGGGDGSDGEGPVRKYKRYKLSDGKDFSSLFFPEKEAMLKLLEHFANKSGE 327
            ++K+   +F+    DG  RI   +Q+A +WY K +  + D+SRYLYT++S   L  SS     S+ +  +R YKRY LSD K F SLFFP+KE++L LL+ F+ + G+
Sbjct:  182 DSKREQLIFELKSPDGPKRIDDLVQRALEWYKKELLSSRDDSRYLYTIVSAEKLSMSSS--KSSEDDDSIR-YKRYALSDQKTFESLFFPDKESLLSLLDDFSQRKGK 286          
BLAST of mRNA_M-pyrifera_M_contig11625.3373.1 vs. uniprot
Match: A0A7S4B551_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B551_CHRCT)

HSP 1 Score: 85.9 bits (211), Expect = 3.020e-17
Identity = 46/106 (43.40%), Postives = 67/106 (63.21%), Query Frame = 1
Query:   31 KCAEQDGDLRIGAFIQKAFDWYCKAMECTEDNSRYLYTLIS-------TSGLPKSSGGGDGSDGEGPVRKYKRYKLSDGKDFSSLFFPEKEAMLKLLEHFANKSGE 327
            K +++DG  +I  FI++A  WY + +    D++RY+YT+IS        S +  +  G  G+D +G +  YKRYKLSD K F SLFFPEKE++LKLL  F  K+G+
Sbjct:  198 KTSKKDGPQQIDRFIERALSWYKQELLKMRDDARYMYTMISKSPSASIVSEMTSTKRGATGADNKGGM-PYKRYKLSDQKTFKSLFFPEKESILKLLSDFQQKAGK 302          
BLAST of mRNA_M-pyrifera_M_contig11625.3373.1 vs. uniprot
Match: A0A1Z5JM40_FISSO (Mitochondrial chaperone BCS1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JM40_FISSO)

HSP 1 Score: 85.1 bits (209), Expect = 5.650e-17
Identity = 47/110 (42.73%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    4 ETKQTSYL--FKCAEQDGDLRIGAFIQKAFDWYCKAMECTEDNSRYLYTLISTSGLPKSSGGGDGSDGEGPVRKYKRYKLSDGKDFSSLFFPEKEAMLKLLEHFANKSGE 327
            E  QT  +  F+   + G+  I  F+ KA+ WY   ++  +D++RYLY L STSG+P      DG    G V  Y RY+LSD K F+SLFF +KE++LK+++HF N+SG+
Sbjct:  201 ENAQTKIVKRFRFQGESGEA-IDCFVAKAYQWYLDELKKMDDHARYLYELKSTSGVPTE----DGESSSGIV--YMRYRLSDEKTFNSLFFRQKESLLKMVDHFLNRSGK 303          
BLAST of mRNA_M-pyrifera_M_contig11625.3373.1 vs. uniprot
Match: D8TL08_VOLCA (AAA domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TL08_VOLCA)

HSP 1 Score: 84.0 bits (206), Expect = 1.440e-16
Identity = 46/108 (42.59%), Postives = 65/108 (60.19%), Query Frame = 1
Query:    4 ETKQTSYLFKCAEQDGDLRIGAFIQKAFDWYCKAMECTEDNSRYLYTLISTSGLPKSSGGGDGSDGEGPVRKYKRYKLSDGKDFSSLFFPEKEAMLKLLEHFANKSGE 327
            +T +  Y  +  E+DG+ RI  F+Q+A + Y +      D +RYLY  +  SG  +     DG  G  P   YKRYKLS+ K F+SLF P+KEA+LKL+E F NK+G+
Sbjct:  183 KTTKVRYHLESREKDGNKRITTFLQEALEVYRREQSARVDPARYLYMPV-LSGF-REPAAADGDSGSKPSAVYKRYKLSEEKTFASLFHPDKEAILKLVEQFLNKTGK 288          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11625.3373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKY0_ECTSI2.660e-4261.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LH94_ECTSI1.890e-3661.32AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FQ72_ECTSI2.210e-2247.11AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K8D9_9PHAE9.550e-2146.09AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7R9U422_9STRA1.730e-2049.00Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1U3S3_9STRA2.180e-2049.00Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2MPL9_9EUKA2.500e-1841.67Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S4B551_CHRCT3.020e-1743.40Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A1Z5JM40_FISSO5.650e-1742.73Mitochondrial chaperone BCS1 n=2 Tax=Fistulifera s... [more]
D8TL08_VOLCA1.440e-1642.59AAA domain-containing protein n=1 Tax=Volvox carte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11625contigM-pyrifera_M_contig11625:579..1837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.9
Seed ortholog evalue9.1e-32
Seed eggNOG ortholog2880.D8LH94
KEGG koko:K08900,ko:K14771
Hectar predicted targeting categoryother localisation
EggNOG free text desc.respiratory chain complex III assembly
EggNOG OGsCOG0465@1,KOG0743@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_002430.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03029
Exons2
Model size336
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.4363012-CDS-M-pyrifera_M_contig11625:578..6961622815679.4363012-CDS-M-pyrifera_M_contig11625:578..696Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11625 579..696 -
1692277518.3245828-CDS-M-pyrifera_M_contig11625:578..6961692277518.3245828-CDS-M-pyrifera_M_contig11625:578..696Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11625 579..696 -
1622815679.4487302-CDS-M-pyrifera_M_contig11625:1619..18371622815679.4487302-CDS-M-pyrifera_M_contig11625:1619..1837Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11625 1620..1837 -
1692277518.3406146-CDS-M-pyrifera_M_contig11625:1619..18371692277518.3406146-CDS-M-pyrifera_M_contig11625:1619..1837Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11625 1620..1837 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11625.3373.1prot_M-pyrifera_M_contig11625.3373.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11625 579..1837 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11625.3373.1

>prot_M-pyrifera_M_contig11625.3373.1 ID=prot_M-pyrifera_M_contig11625.3373.1|Name=mRNA_M-pyrifera_M_contig11625.3373.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
PETKQTSYLFKCAEQDGDLRIGAFIQKAFDWYCKAMECTEDNSRYLYTLI
STSGLPKSSGGGDGSDGEGPVRKYKRYKLSDGKDFSSLFFPEKEAMLKLL
EHFANKSGEGL*
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mRNA from alignment at M-pyrifera_M_contig11625:579..1837-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11625.3373.1 ID=mRNA_M-pyrifera_M_contig11625.3373.1|Name=mRNA_M-pyrifera_M_contig11625.3373.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1259bp|location=Sequence derived from alignment at M-pyrifera_M_contig11625:579..1837- (Macrocystis pyrifera P11B4 male)
CCGGAAACAAAACAGACGAGCTACTTGTTCAAGTGCGCCGAGCAGGACGG AGACTTGCGCATCGGGGCGTTCATCCAGAAGGCTTTCGACTGGTATTGCA AGGCGATGGAATGCACCGAGGACAACTCTCGGTACCTCTACACCCTCATT TCGACGAGCGGACTGCCCAAGTCGTCGGGGGGAGGCGACGGAAGCGATGG TGAAGGCCCCGTCCGCAAGTGAGAAACTCCAGAGAAGATACGCATGATCC GAATTTTCTATTGCTCATGTTGCCCGGTGGGAGCCCACGGAATCTGCAGT ATCTAGGACGTGTTTCCTGGGCTGCGTATGCACTACACAGATAGATAGAT CCTGCACAGATAGATAGATCCTGCACAGATCCTGCACAGTATATCTTAAC GGCAGGATAGGATCTAGATGATCGATCTGTGAATGATCTATCTATCTGTG AATGATCTATCTATCTGTGAATGATCTATCTATCTGTGAATGATCTATCT ATCTGTGGATGATCTCTATCTGTGGATGATCTATCTATCTGTAGATCATG TATCGGATTCGTCTGACGTTGTGAATACTTGTCAATGGGGGCACATGTGA CGGACAACCTCGACTCGCGAGCAGCCAGACCACCCACTACCATACGACTC TGGACGAAAGTGCAAGGACCGTTAAATATTCACGTTGATGCCGGAGCGTT CCCTATATTTCCGCTCAAAGTGGAGACCGCTTACGCTAGCATACACCAGT AACTATTACGGGGGGCCATAGTAAATAGGACCAAATATTGTTAGTAAAAA TAGCAAAATATATAGGTTTTTGTGTGTACCGTAGGTCCTACTTACTATGG ACCTCCGAAATAGACACTATTTCGGGGGACCGTAGTAAATAGGACCAAAT ACTCTTAGTAAAAATAGGGAAATATATAGGTCTTTGTGTACCGTAGGTCC TATTTACTATGGTCCCCCGTAATTCAGTAAATGTCTCTACGAAGGATGAA AGACCCCAAGACCGCATTATTATATGACATGGTTGAAATTCGCGCGATTG GTCTTTTGGCTTGGGGCGCTCGTCTCCCTAGGAAAAAAAACAAAACTGGA CGCTTAAAAAAAGATTATTTTCGGCTTGCCATGCACATCAGGTACAAGCG TTACAAACTGAGTGACGGAAAGGACTTTTCCAGCCTTTTCTTCCCCGAGA AGGAAGCCATGCTGAAGCTGCTGGAGCATTTCGCCAACAAGAGTGGTGAG GGTCTTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11625:579..1837-

>mRNA_M-pyrifera_M_contig11625.3373.1 ID=mRNA_M-pyrifera_M_contig11625.3373.1|Name=mRNA_M-pyrifera_M_contig11625.3373.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig11625:579..1837- (Macrocystis pyrifera P11B4 male)
CCGGAAACAAAACAGACGAGCTACTTGTTCAAGTGCGCCGAGCAGGACGG
AGACTTGCGCATCGGGGCGTTCATCCAGAAGGCTTTCGACTGGTATTGCA
AGGCGATGGAATGCACCGAGGACAACTCTCGGTACCTCTACACCCTCATT
TCGACGAGCGGACTGCCCAAGTCGTCGGGGGGAGGCGACGGAAGCGATGG
TGAAGGCCCCGTCCGCAACCGGAAACAAAACAGACGAGCTACTTGTTCAA
GTGCGCCGAGCAGGACGGAGACTTGCGCATCGGGGCGTTCATCCAGAAGG
CTTTCGACTGGTATTGCAAGGCGATGGAATGCACCGAGGACAACTCTCGG
TACCTCTACACCCTCATTTCGACGAGCGGACTGCCCAAGTCGTCGGGGGG
AGGCGACGGAAGCGATGGTGAAGGCCCCGTCCGCAAGTACAAGCGTTACA
AACTGAGTGACGGAAAGGACTTTTCCAGCCTTTTCTTCCCCGAGAAGGAA
GCCATGCTGAAGCTGCTGGAGCATTTCGCCAACAAGAGTGGTGAGGGTCT
TTGAGTACAAGCGTTACAAACTGAGTGACGGAAAGGACTTTTCCAGCCTT
TTCTTCCCCGAGAAGGAAGCCATGCTGAAGCTGCTGGAGCATTTCGCCAA
CAAGAGTGGTGAGGGTCTTTGA
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