mRNA_M-pyrifera_M_contig116246.3372.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116246.3372.1
Unique NamemRNA_M-pyrifera_M_contig116246.3372.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig116246.3372.1 vs. uniprot
Match: D5SNJ0_PLAL2 (Translational regulator CsrA n=3 Tax=Planctopirus TaxID=1649480 RepID=D5SNJ0_PLAL2)

HSP 1 Score: 59.7 bits (143), Expect = 9.190e-11
Identity = 27/36 (75.00%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 MLVLTRKQAETIHIGEDIVIKVVQTGRGSIKIGVEA 108
            MLVLTRK++E+IH+G DIVIKVVQTG+G++KIG+EA
Sbjct:    1 MLVLTRKKSESIHLGNDIVIKVVQTGKGAVKIGIEA 36
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BLAST of mRNA_M-pyrifera_M_contig116246.3372.1 vs. uniprot
Match: A0A518CL59_9PLAN (Translational regulator CsrA n=1 Tax=Polystyrenella longa TaxID=2528007 RepID=A0A518CL59_9PLAN)

HSP 1 Score: 56.6 bits (135), Expect = 1.160e-9
Identity = 25/36 (69.44%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 MLVLTRKQAETIHIGEDIVIKVVQTGRGSIKIGVEA 108
            MLVLTRK++E IHIGE+IV+KV++TG+G +KIG+EA
Sbjct:    1 MLVLTRKKSEMIHIGENIVVKVIRTGKGHVKIGIEA 36
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BLAST of mRNA_M-pyrifera_M_contig116246.3372.1 vs. uniprot
Match: A0A3L7VQ24_9BACT (Translational regulator CsrA n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7VQ24_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 1.220e-9
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 MLVLTRKQAETIHIGEDIVIKVVQTGRGSIKIGVEA 108
            MLVLTRK  ETI IG+DIVIKV++TG GS+KIG+EA
Sbjct:    1 MLVLTRKAEETIRIGDDIVIKVIRTGNGSVKIGIEA 36
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BLAST of mRNA_M-pyrifera_M_contig116246.3372.1 vs. uniprot
Match: A0A7W0M9P5_9PLAN (Translational regulator CsrA n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7W0M9P5_9PLAN)

HSP 1 Score: 57.0 bits (136), Expect = 1.230e-9
Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 MLVLTRKQAETIHIGEDIVIKVVQTGRGSIKIGVEA 108
            MLVLTRKQ E IHIGE I IKV++TG+G++KIG+EA
Sbjct:    1 MLVLTRKQGEVIHIGEGIAIKVIKTGKGTVKIGIEA 36
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BLAST of mRNA_M-pyrifera_M_contig116246.3372.1 vs. uniprot
Match: A0A517R2R7_9BACT (Translational regulator CsrA n=1 Tax=Planctomycetes bacterium Pan189 TaxID=2527980 RepID=A0A517R2R7_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 1.740e-9
Identity = 25/36 (69.44%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 MLVLTRKQAETIHIGEDIVIKVVQTGRGSIKIGVEA 108
            MLVLTRKQAETI IG+++ IKV++TG+GS+KIG++A
Sbjct:    1 MLVLTRKQAETIQIGDNVTIKVIRTGKGSVKIGIDA 36
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BLAST of mRNA_M-pyrifera_M_contig116246.3372.1 vs. uniprot
Match: A0A142X564_9PLAN (Translational regulator CsrA n=1 Tax=Planctomyces sp. SH-PL14 TaxID=1632864 RepID=A0A142X564_9PLAN)

HSP 1 Score: 55.8 bits (133), Expect = 1.760e-9
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 MLVLTRKQAETIHIGEDIVIKVVQTGRGSIKIGVEA 108
            MLVLTRKQ E I IG DIVIKV+ TGRG +KIG+EA
Sbjct:    1 MLVLTRKQEEMIRIGHDIVIKVISTGRGKVKIGIEA 36
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BLAST of mRNA_M-pyrifera_M_contig116246.3372.1 vs. uniprot
Match: A0A5C5X930_9PLAN (Translational regulator CsrA n=1 Tax=Thalassoglobus neptunius TaxID=1938619 RepID=A0A5C5X930_9PLAN)

HSP 1 Score: 55.8 bits (133), Expect = 1.890e-9
Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 MLVLTRKQAETIHIGEDIVIKVVQTGRGSIKIGVEA 108
            MLVLTRK+ ETI IG+DIVIKV+ TGRG +KIG++A
Sbjct:    1 MLVLTRKKNETIQIGDDIVIKVISTGRGKVKIGIDA 36
[Close]
BLAST of mRNA_M-pyrifera_M_contig116246.3372.1 vs. uniprot
Match: A0A3E0PWD7_9BACT (Translational regulator CsrA n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0PWD7_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 2.190e-9
Identity = 26/36 (72.22%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 MLVLTRKQAETIHIGEDIVIKVVQTGRGSIKIGVEA 108
            MLVLTRK+++ I IGE+IV+KV+QTGRGS+KIGV+A
Sbjct:    1 MLVLTRKKSQMIQIGENIVVKVIQTGRGSVKIGVDA 36
[Close]
BLAST of mRNA_M-pyrifera_M_contig116246.3372.1 vs. uniprot
Match: A0A177QZU5_9PLAN (Translational regulator CsrA n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A177QZU5_9PLAN)

HSP 1 Score: 55.5 bits (132), Expect = 3.170e-9
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 MLVLTRKQAETIHIGEDIVIKVVQTGRGSIKIGVEA 108
            MLVLTRK AETI IG DIVIKV+  GRG +KIGVEA
Sbjct:    1 MLVLTRKTAETIQIGNDIVIKVISCGRGRVKIGVEA 36
[Close]
BLAST of mRNA_M-pyrifera_M_contig116246.3372.1 vs. uniprot
Match: A0A2E7KBR8_9PLAN (Translational regulator CsrA n=5 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KBR8_9PLAN)

HSP 1 Score: 55.1 bits (131), Expect = 4.720e-9
Identity = 26/36 (72.22%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 MLVLTRKQAETIHIGEDIVIKVVQTGRGSIKIGVEA 108
            MLVLTRK+ E I IGEDIVIK+++TG+G+IKIG+EA
Sbjct:    1 MLVLTRKRDEVIQIGEDIVIKILKTGKGAIKIGIEA 36
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116246.3372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D5SNJ0_PLAL29.190e-1175.00Translational regulator CsrA n=3 Tax=Planctopirus ... [more]
A0A518CL59_9PLAN1.160e-969.44Translational regulator CsrA n=1 Tax=Polystyrenell... [more]
A0A3L7VQ24_9BACT1.220e-975.00Translational regulator CsrA n=1 Tax=Planctomycete... [more]
A0A7W0M9P5_9PLAN1.230e-972.22Translational regulator CsrA n=1 Tax=Planctomyceta... [more]
A0A517R2R7_9BACT1.740e-969.44Translational regulator CsrA n=1 Tax=Planctomycete... [more]
A0A142X564_9PLAN1.760e-975.00Translational regulator CsrA n=1 Tax=Planctomyces ... [more]
A0A5C5X930_9PLAN1.890e-972.22Translational regulator CsrA n=1 Tax=Thalassoglobu... [more]
A0A3E0PWD7_9BACT2.190e-972.22Translational regulator CsrA n=1 Tax=Planctomycete... [more]
A0A177QZU5_9PLAN3.170e-977.78Translational regulator CsrA n=2 Tax=Planctomyceta... [more]
A0A2E7KBR8_9PLAN4.720e-972.22Translational regulator CsrA n=5 Tax=Gimesia TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116246contigM-pyrifera_M_contig116246:455..562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size108
Cds size108
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.4022539-CDS-M-pyrifera_M_contig116246:454..5621622815679.4022539-CDS-M-pyrifera_M_contig116246:454..562Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116246 455..562 +
1692277518.308993-CDS-M-pyrifera_M_contig116246:454..5621692277518.308993-CDS-M-pyrifera_M_contig116246:454..562Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116246 455..562 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116246.3372.1prot_M-pyrifera_M_contig116246.3372.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116246 455..562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116246.3372.1

>prot_M-pyrifera_M_contig116246.3372.1 ID=prot_M-pyrifera_M_contig116246.3372.1|Name=mRNA_M-pyrifera_M_contig116246.3372.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=36bp
MLVLTRKQAETIHIGEDIVIKVVQTGRGSIKIGVEA
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mRNA from alignment at M-pyrifera_M_contig116246:455..562+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116246.3372.1 ID=mRNA_M-pyrifera_M_contig116246.3372.1|Name=mRNA_M-pyrifera_M_contig116246.3372.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=108bp|location=Sequence derived from alignment at M-pyrifera_M_contig116246:455..562+ (Macrocystis pyrifera P11B4 male)
ATGCTCGTCCTGACTCGCAAGCAAGCCGAAACCATTCACATCGGCGAAGA
TATTGTCATCAAGGTTGTCCAAACTGGTCGCGGTAGCATCAAGATTGGTG
TCGAGGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116246:455..562+

>mRNA_M-pyrifera_M_contig116246.3372.1 ID=mRNA_M-pyrifera_M_contig116246.3372.1|Name=mRNA_M-pyrifera_M_contig116246.3372.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig116246:455..562+ (Macrocystis pyrifera P11B4 male)
ATGCTCGTCCTGACTCGCAAGCAAGCCGAAACCATTCACATCGGCGAAGA
TATTGTCATCAAGGTTGTCCAAACTGGTCGCGGTAGCATCAAGATTGGTG
TCGAGGCGATGCTCGTCCTGACTCGCAAGCAAGCCGAAACCATTCACATC
GGCGAAGATATTGTCATCAAGGTTGTCCAAACTGGTCGCGGTAGCATCAA
GATTGGTGTCGAGGCG
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