mRNA_M-pyrifera_M_contig11624.3370.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11624.3370.1
Unique NamemRNA_M-pyrifera_M_contig11624.3370.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11624.3370.1 vs. uniprot
Match: D8LIV8_ECTSI (Cir_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIV8_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.210e-18
Identity = 40/55 (72.73%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 QVNFKPFNNVVRHVRCMRCEEWGHRSGDRECKRINDNPNDYERRLREDPMSHMVS 165
            +VNFKPFNNV+RHVRCMRC EWGHRSGDREC  +++NP+D ER+ REDPMS+M +
Sbjct:  186 KVNFKPFNNVIRHVRCMRCGEWGHRSGDRECS-VDENPHDAERQKREDPMSYMAA 239
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BLAST of mRNA_M-pyrifera_M_contig11624.3370.1 vs. uniprot
Match: A0A8K1C5M5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5M5_PYTOL)

HSP 1 Score: 79.0 bits (193), Expect = 4.170e-14
Identity = 49/120 (40.83%), Postives = 67/120 (55.83%), Query Frame = 1 
Query:    1 QVNFKPFNNVVRHVRCMRCEEWGHRSGDRECKRINDNPNDYERRLREDPMSHMVSAPDGRL------------GNAGVAGGNDALGASSVDGNPNEDADSAFVNSLSSKKKRRLLRMLQK 324
            +VNFKP    +R+VRC+RC +WGH+SGDREC   + NP D  R+ REDPM+ M       L            G AG A   D + +   D +P    + AF+  LSS++KR LL+ L+K
Sbjct:  164 KVNFKPMGRQLRNVRCLRCGQWGHQSGDRECAMRDQNPLDAARQAREDPMTFMAQLKKQELVLRKAALPLEMQGEAGKAQEYDIILSEEEDADP----EKAFLAKLSSREKRSLLKKLRK 279
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BLAST of mRNA_M-pyrifera_M_contig11624.3370.1 vs. uniprot
Match: A0A6A3UC17_9STRA (Cir_N domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UC17_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 8.760e-13
Identity = 49/125 (39.20%), Postives = 71/125 (56.80%), Query Frame = 1 
Query:    1 QVNFKPFNNVVRHVRCMRCEEWGHRSGDRECKRINDNPNDYERRLREDPMSH---MVSAPDGRLGNAG-----VAGGNDALGASSVDGNPNEDADSAFVNSLSSKKKRRLLRMLQKLEAGERQGA 351
            +VNF P    +R+VRC+RC EWGH+SGDRECK  + NPND  R+  EDP++    + SA    +   G     +    +       D    E A+ AF+ +LSSK+KR+L++ LQK   G+R  +
Sbjct:  156 RVNFNPVGLRLRNVRCIRCGEWGHQSGDRECKLRDHNPNDATRQRWEDPVTEINKLKSAKQELVFRRGALPLEMQEATEEYEILQSDDEAVEAAEDAFLATLSSKQKRKLMKKLQKDSRGDRSSS 280
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BLAST of mRNA_M-pyrifera_M_contig11624.3370.1 vs. uniprot
Match: A0A6A3EV93_9STRA (Cir_N domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3EV93_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.050e-12
Identity = 49/123 (39.84%), Postives = 69/123 (56.10%), Query Frame = 1 
Query:    1 QVNFKPFNNVVRHVRCMRCEEWGHRSGDRECKRINDNPNDYERRLREDPMSH---MVSAPDGRLGNAG-----VAGGNDALGASSVDGNPNEDADSAFVNSLSSKKKRRLLRMLQKLEAGERQ 345
            +VNF P    +R+VRC+RC EWGH+SGDRECK  + NPND  R+  EDP++    + SA    +   G     +    +       D    E A+ AF+ +LSSK+KR+L++ LQK    E Q
Sbjct:  156 RVNFNPVGLRLRNVRCIRCGEWGHQSGDRECKLRDHNPNDATRQRWEDPVTEINKLKSAKQELVFRRGALPLEMQEATEEYEILQSDDEAVEAAEDAFLATLSSKQKRKLMKKLQKDSREEEQ 278
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BLAST of mRNA_M-pyrifera_M_contig11624.3370.1 vs. uniprot
Match: A0A329RCA5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RCA5_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 3.240e-12
Identity = 43/114 (37.72%), Postives = 69/114 (60.53%), Query Frame = 1 
Query:    1 QVNFKPFNNVVRHVRCMRCEEWGHRSGDRECKRINDNPNDYERRLREDPMSHMVSAPDG------RLGNAGVAGGNDALGASSVDGNPNEDADSAFVNSLSSKKKRRLLRMLQK 324
            +VNF P    +R+VRC+RC EWGH+SGDRECK  + NPND  R+  EDP++ +            R G   +     A+    +  + +ED ++AF+ +LS+K+K++L++ L+K
Sbjct:  102 KVNFNPLGLRLRNVRCIRCGEWGHQSGDRECKLRDQNPNDATRQRWEDPVTEINKLKSAKQDLVLRRGALPLEMQEAAVEEFEILQSDDEDVEAAFLATLSTKEKKKLMKKLKK 215
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BLAST of mRNA_M-pyrifera_M_contig11624.3370.1 vs. uniprot
Match: F0WVY7_9STRA (Protein kinase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WVY7_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.130e-11
Identity = 49/115 (42.61%), Postives = 66/115 (57.39%), Query Frame = 1 
Query:    1 QVNFKPFNNVVRHVRCMRCEEWGHRSGDRECKRINDNPNDYERRLREDPMSHM-----VSAPDGRLGNAGVA----GGNDALGASSVDGNPNEDADS--AFVNSLSSKKKRRLLR 312
            +VNFKP    +R+VRC+RC EWGH SGDRECK  N NP+D  R+  EDP S+M     VS  +  L  A +     G N A     +    + D DS  AF+  L++K+K+ LL+
Sbjct:  209 KVNFKPMGVQLRNVRCLRCGEWGHLSGDRECKLRNFNPHDAARQALEDPFSYMNKMTQVSKQELVLRRAAIPFEMHGENIAKDYELLSSEDDSDCDSESAFLEKLTTKEKKLLLK 323
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BLAST of mRNA_M-pyrifera_M_contig11624.3370.1 vs. uniprot
Match: A0A5D6XYB1_9STRA (Cir_N domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYB1_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.560e-11
Identity = 46/117 (39.32%), Postives = 66/117 (56.41%), Query Frame = 1 
Query:    1 QVNFKPFNNVVRHVRCMRCEEWGHRSGDRECKRINDNPNDYERRLREDPMSHMVSAPDGR--------LGNAGVAGGND--ALGASSVDGNPNEDADSAFVNSLSSKKKRRLLRMLQ 321
            +VNFKP    +R+VRCMRC EWGH+SGDREC   + NP+D  R+L EDPM+ +               L    V G  +   L +   D   + DA+  F+  LS+K+K++LL+ L+
Sbjct:  546 KVNFKPMGKQLRNVRCMRCGEWGHQSGDRECALRDANPHDAARQLLEDPMAQLAQKKRELVLRKAALPLEMQEVPGKEEFEILLSDEEDDQSSSDAEREFLAKLSAKEKKKLLKRLK 662
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BLAST of mRNA_M-pyrifera_M_contig11624.3370.1 vs. uniprot
Match: W2KQ69_PHYPR (Cir_N domain-containing protein n=15 Tax=Phytophthora TaxID=4783 RepID=W2KQ69_PHYPR)

HSP 1 Score: 70.1 bits (170), Expect = 4.980e-11
Identity = 47/120 (39.17%), Postives = 70/120 (58.33%), Query Frame = 1 
Query:    1 QVNFKPFNNVVRHVRCMRCEEWGHRSGDRECKRINDNPNDYERRLREDPMSH---MVSAPDGRLGNAGV---------AGGNDALGASSVDGNPNEDADSAFVNSLSSKKKRRLLRMLQK 324
            +VNF P    +R+VRC+RC EWGH+SGDRECK  + NPND  R+  EDP++    + SA    +   G          A G + L +   D    E A+ AF+ +LS+K+K++L++ L+K
Sbjct:  158 KVNFNPLGLRLRNVRCIRCGEWGHQSGDRECKLRDQNPNDATRQRWEDPVTEINKLKSAKQDLVFRRGALPLEMQETTAQGFEILQSDDEDV---EAAEDAFLATLSTKQKKKLMKKLKK 274
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BLAST of mRNA_M-pyrifera_M_contig11624.3370.1 vs. uniprot
Match: A0A024GR32_9STRA (Cir_N domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GR32_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.220e-10
Identity = 46/117 (39.32%), Postives = 68/117 (58.12%), Query Frame = 1 
Query:    1 QVNFKPFNNVVRHVRCMRCEEWGHRSGDRECKRINDNPNDYERRLREDPMSHM-----VSAPDGRLGNAGVAGGNDALGAS------SVDGNPNEDADSAFVNSLSSKKKRRLLRML 318
            +VNFKP    +R+VRC+RC EWGH SGDREC+  N NP+D  R+  EDP S+M     V+  +  L  A +         S      S + + + D++SAF+  L++K+K+ LL+ L
Sbjct:  166 KVNFKPMGVQLRNVRCLRCGEWGHLSGDRECELRNFNPHDAARQALEDPFSYMNKMTQVNKQELVLRRAAIPFEMQTEHISKDYELISSEDDSDCDSESAFLQKLTTKEKKMLLKKL 282
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BLAST of mRNA_M-pyrifera_M_contig11624.3370.1 vs. uniprot
Match: A0A1V9YC20_9STRA (Cir_N domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YC20_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.270e-10
Identity = 48/124 (38.71%), Postives = 72/124 (58.06%), Query Frame = 1 
Query:    1 QVNFKPFNNVVRHVRCMRCEEWGHRSGDRECKRINDNPNDYERRLREDPMSHMVSAPDGRLGN-----------AGVAGGNDALGASSVDGNPNEDADSAFVNSLSSKKKRRLLRMLQKLEAGE 339
            +VNF+P    +R+V+C+RC EWGH+SGDREC     NP D  R+  EDPM  +++  + R  +             ++G  D L +   D     D + A++ SLSSK+K+RLL+ L++ EAGE
Sbjct:  162 RVNFQPVGVRLRNVKCIRCGEWGHQSGDRECNLREFNPLDAARQAMEDPMQ-LINKINARKNDLVMKKLPLEMQTELSGDFDILPSDDDDA---ADPERAYLASLSSKEKKRLLKKLKE-EAGE 280
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11624.3370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIV8_ECTSI1.210e-1872.73Cir_N domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A8K1C5M5_PYTOL4.170e-1440.83Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A3UC17_9STRA8.760e-1339.20Cir_N domain-containing protein n=3 Tax=Phytophtho... [more]
A0A6A3EV93_9STRA3.050e-1239.84Cir_N domain-containing protein n=2 Tax=Phytophtho... [more]
A0A329RCA5_9STRA3.240e-1237.72Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
F0WVY7_9STRA1.130e-1142.61Protein kinase putative n=1 Tax=Albugo laibachii N... [more]
A0A5D6XYB1_9STRA1.560e-1139.32Cir_N domain-containing protein n=1 Tax=Pythium br... [more]
W2KQ69_PHYPR4.980e-1139.17Cir_N domain-containing protein n=15 Tax=Phytophth... [more]
A0A024GR32_9STRA1.220e-1039.32Cir_N domain-containing protein n=1 Tax=Albugo can... [more]
A0A1V9YC20_9STRA1.270e-1038.71Cir_N domain-containing protein n=1 Tax=Achlya hyp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11624contigM-pyrifera_M_contig11624:8206..8718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue4.3e-17
Seed eggNOG ortholog2880.D8LIV8
Preferred nameCIR1
KEGG koko:K06066,ko:K14558
KEGG Pathwayko03008,ko04330,map03008,map04330
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0000981,GO:0003006,GO:0003674,GO:0003676,GO:0003700,GO:0003705,GO:0003712,GO:0003714,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005815,GO:0005856,GO:0006139,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0007276,GO:0007281,GO:0007292,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015630,GO:0016070,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0019219,GO:0019222,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034641,GO:0042826,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043621,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051704,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0097159,GO:0140110,GO:1901360,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.RNA splicing
EggNOG OGsKOG3794@1,KOG3794@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size513
Cds size513
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.3292596-CDS-M-pyrifera_M_contig11624:8205..87181622815679.3292596-CDS-M-pyrifera_M_contig11624:8205..8718Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11624 8206..8718 -
1692277518.2812328-CDS-M-pyrifera_M_contig11624:8205..87181692277518.2812328-CDS-M-pyrifera_M_contig11624:8205..8718Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11624 8206..8718 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11624.3370.1prot_M-pyrifera_M_contig11624.3370.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11624 8206..8718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11624.3370.1

>prot_M-pyrifera_M_contig11624.3370.1 ID=prot_M-pyrifera_M_contig11624.3370.1|Name=mRNA_M-pyrifera_M_contig11624.3370.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=171bp
QVNFKPFNNVVRHVRCMRCEEWGHRSGDRECKRINDNPNDYERRLREDPM
SHMVSAPDGRLGNAGVAGGNDALGASSVDGNPNEDADSAFVNSLSSKKKR
RLLRMLQKLEAGERQGAGKEEEEEEDKGKRRKKERKSKKKKSSKEDGGSK
TRRDEDDGDGEGRNKEQEREQ
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mRNA from alignment at M-pyrifera_M_contig11624:8206..8718-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11624.3370.1 ID=mRNA_M-pyrifera_M_contig11624.3370.1|Name=mRNA_M-pyrifera_M_contig11624.3370.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=513bp|location=Sequence derived from alignment at M-pyrifera_M_contig11624:8206..8718- (Macrocystis pyrifera P11B4 male)
CAGGTGAATTTCAAGCCGTTCAACAATGTGGTTCGGCACGTTAGGTGCAT
GCGGTGCGAGGAGTGGGGACATCGCAGCGGGGACCGAGAGTGCAAGCGGA
TAAACGATAACCCGAACGACTACGAGCGCCGCCTCCGCGAGGACCCGATG
TCGCACATGGTGTCCGCTCCCGATGGAAGGCTTGGGAACGCAGGAGTCGC
GGGGGGGAACGACGCTCTCGGAGCGAGTTCTGTGGATGGTAACCCGAACG
AGGACGCGGACTCGGCGTTCGTGAACAGTCTTTCGTCGAAAAAGAAGCGC
CGCCTTTTGAGGATGTTGCAGAAATTGGAGGCCGGAGAGAGGCAGGGGGC
GGGGAAGGAGGAGGAAGAGGAGGAGGACAAGGGGAAAAGGAGAAAGAAAG
AGCGCAAGAGCAAGAAAAAGAAGAGTAGTAAAGAAGATGGGGGTAGCAAG
ACAAGGCGGGACGAGGATGATGGCGACGGCGAAGGGCGGAACAAGGAACA
GGAGAGGGAGCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11624:8206..8718-

>mRNA_M-pyrifera_M_contig11624.3370.1 ID=mRNA_M-pyrifera_M_contig11624.3370.1|Name=mRNA_M-pyrifera_M_contig11624.3370.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1026bp|location=Sequence derived from alignment at M-pyrifera_M_contig11624:8206..8718- (Macrocystis pyrifera P11B4 male)
CAGGTGAATTTCAAGCCGTTCAACAATGTGGTTCGGCACGTTAGGTGCAT
GCGGTGCGAGGAGTGGGGACATCGCAGCGGGGACCGAGAGTGCAAGCGGA
TAAACGATAACCCGAACGACTACGAGCGCCGCCTCCGCGAGGACCCGATG
TCGCACATGGTGTCCGCTCCCGATGGAAGGCTTGGGAACGCAGGAGTCGC
GGGGGGGAACGACGCTCTCGGAGCGAGTTCTGTGGATGGTAACCCGAACG
AGGACGCGGACTCGGCGTTCGTGAACAGTCTTTCGTCGAAAAAGAAGCGC
CGCCTTTTGAGGATGTTGCAGAAATTGGAGGCCGGAGAGAGGCAGGGGGC
GGGGAAGGAGGAGGAAGAGGAGGAGGACAAGGGGAAAAGGAGAAAGAAAG
AGCGCAAGAGCAAGAAAAAGAAGAGTAGTAAAGAAGATGGGGGTAGCAAG
ACAAGGCGGGACGAGGATGATGGCGACGGCGAAGGGCGGAACAAGGAACA
GGAGAGGGAGCAGCAGGTGAATTTCAAGCCGTTCAACAATGTGGTTCGGC
ACGTTAGGTGCATGCGGTGCGAGGAGTGGGGACATCGCAGCGGGGACCGA
GAGTGCAAGCGGATAAACGATAACCCGAACGACTACGAGCGCCGCCTCCG
CGAGGACCCGATGTCGCACATGGTGTCCGCTCCCGATGGAAGGCTTGGGA
ACGCAGGAGTCGCGGGGGGGAACGACGCTCTCGGAGCGAGTTCTGTGGAT
GGTAACCCGAACGAGGACGCGGACTCGGCGTTCGTGAACAGTCTTTCGTC
GAAAAAGAAGCGCCGCCTTTTGAGGATGTTGCAGAAATTGGAGGCCGGAG
AGAGGCAGGGGGCGGGGAAGGAGGAGGAAGAGGAGGAGGACAAGGGGAAA
AGGAGAAAGAAAGAGCGCAAGAGCAAGAAAAAGAAGAGTAGTAAAGAAGA
TGGGGGTAGCAAGACAAGGCGGGACGAGGATGATGGCGACGGCGAAGGGC
GGAACAAGGAACAGGAGAGGGAGCAG
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