mRNA_M-pyrifera_M_contig116197.3363.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116197.3363.1
Unique NamemRNA_M-pyrifera_M_contig116197.3363.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig116197.3363.1 vs. uniprot
Match: A0A8E8PJK2_9STRA (Ribosomal protein S15A n=2 Tax=Placidida sp. TaxID=2810146 RepID=A0A8E8PJK2_9STRA)

HSP 1 Score: 206 bits (523), Expect = 6.690e-67
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 1 
Query:    1 SKVIIKFLQVMQKNGYIGEFELVDDRRAGKIVVNLTGRINKCGVISPRFDVPVKDMEKWVANLLPSRQFGHVVLTTSQGIMDHEEARKRHTGGKVLGFFY 300
            SKVIIKFLQVMQKNGY+GEFELVDDRRAGKIVVNLTGRINKCGVISPRFDVPVKDMEKWVANLLPSRQFGHVVLTTSQGIMDHEEARKRHTGGKVLGFFY
Sbjct:   31 SKVIIKFLQVMQKNGYVGEFELVDDRRAGKIVVNLTGRINKCGVISPRFDVPVKDMEKWVANLLPSRQFGHVVLTTSQGIMDHEEARKRHTGGKVLGFFY 130
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BLAST of mRNA_M-pyrifera_M_contig116197.3363.1 vs. uniprot
Match: A0A7S3PA85_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PA85_9STRA)

HSP 1 Score: 182 bits (463), Expect = 9.420e-58
Identity = 84/100 (84.00%), Postives = 93/100 (93.00%), Query Frame = 1 
Query:    1 SKVIIKFLQVMQKNGYIGEFELVDDRRAGKIVVNLTGRINKCGVISPRFDVPVKDMEKWVANLLPSRQFGHVVLTTSQGIMDHEEARKRHTGGKVLGFFY 300
            SKVI+KFLQ MQK+GYIGEFE+VDD R+GKIVV L GRINKCGV+SPRFDV VKDMEKWV NLLPSRQFGH+VLTT+ GIMDHEEAR++HTGGKVLGFFY
Sbjct:   31 SKVIVKFLQCMQKHGYIGEFEIVDDHRSGKIVVELNGRINKCGVVSPRFDVQVKDMEKWVGNLLPSRQFGHIVLTTAYGIMDHEEARRKHTGGKVLGFFY 130
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BLAST of mRNA_M-pyrifera_M_contig116197.3363.1 vs. uniprot
Match: A0A7S1D1S7_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D1S7_CYCTE)

HSP 1 Score: 182 bits (461), Expect = 1.900e-57
Identity = 84/100 (84.00%), Postives = 94/100 (94.00%), Query Frame = 1 
Query:    1 SKVIIKFLQVMQKNGYIGEFELVDDRRAGKIVVNLTGRINKCGVISPRFDVPVKDMEKWVANLLPSRQFGHVVLTTSQGIMDHEEARKRHTGGKVLGFFY 300
            SKV++KFLQVMQK+GYIGEFELVDD R+GKIVV LTGRINKCGVISPRFDV V D+EKWVANLLPSRQFGH+VLTTS GIMDHEEAR++H GGK+LGFF+
Sbjct:   31 SKVVVKFLQVMQKHGYIGEFELVDDHRSGKIVVQLTGRINKCGVISPRFDVTVADVEKWVANLLPSRQFGHIVLTTSAGIMDHEEARRKHIGGKILGFFF 130
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BLAST of mRNA_M-pyrifera_M_contig116197.3363.1 vs. uniprot
Match: A0A812JFE9_9DINO (RPS15A protein n=2 Tax=Sar TaxID=2698737 RepID=A0A812JFE9_9DINO)

HSP 1 Score: 181 bits (459), Expect = 3.830e-57
Identity = 83/100 (83.00%), Postives = 95/100 (95.00%), Query Frame = 1 
Query:    1 SKVIIKFLQVMQKNGYIGEFELVDDRRAGKIVVNLTGRINKCGVISPRFDVPVKDMEKWVANLLPSRQFGHVVLTTSQGIMDHEEARKRHTGGKVLGFFY 300
            SKVI+KFLQVMQK+GYIG+FELVDD RAGKIVV LTGRINKCGVISPRFDV V ++EKW+++LLPSRQFGH+VLTTS GIMDHEEAR++HTGGK+LGFFY
Sbjct:   31 SKVIVKFLQVMQKHGYIGDFELVDDHRAGKIVVQLTGRINKCGVISPRFDVTVPEIEKWISSLLPSRQFGHIVLTTSAGIMDHEEARRKHTGGKILGFFY 130
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BLAST of mRNA_M-pyrifera_M_contig116197.3363.1 vs. uniprot
Match: A0A8E8U737_9STRA (Ribosomal protein S15A n=1 Tax=Suigetsumonas clinomigrationis TaxID=1527026 RepID=A0A8E8U737_9STRA)

HSP 1 Score: 180 bits (457), Expect = 7.730e-57
Identity = 85/100 (85.00%), Postives = 94/100 (94.00%), Query Frame = 1 
Query:    1 SKVIIKFLQVMQKNGYIGEFELVDDRRAGKIVVNLTGRINKCGVISPRFDVPVKDMEKWVANLLPSRQFGHVVLTTSQGIMDHEEARKRHTGGKVLGFFY 300
            SKVIIKFLQVMQK+GYIGEFE+VDDRRAGKIVV+L GRINKCGVISPRFD+   + EKWVA LLPSRQFGH+VLTTSQGIMDHEEAR++HTGGKVLGFF+
Sbjct:   31 SKVIIKFLQVMQKHGYIGEFEVVDDRRAGKIVVSLNGRINKCGVISPRFDMNAHESEKWVATLLPSRQFGHIVLTTSQGIMDHEEARRKHTGGKVLGFFF 130
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BLAST of mRNA_M-pyrifera_M_contig116197.3363.1 vs. uniprot
Match: D7G3J4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3J4_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 1.660e-56
Identity = 82/100 (82.00%), Postives = 95/100 (95.00%), Query Frame = 1 
Query:    1 SKVIIKFLQVMQKNGYIGEFELVDDRRAGKIVVNLTGRINKCGVISPRFDVPVKDMEKWVANLLPSRQFGHVVLTTSQGIMDHEEARKRHTGGKVLGFFY 300
            SKV++KFLQVMQKNGYIGEFE+VDD RAGKIVV LTGRINKCGVISPRFD+P++D+EKWV NLLP+R FGH+VLTT+ GIMDHEEAR++HTGGK+LGFFY
Sbjct:   88 SKVVVKFLQVMQKNGYIGEFEIVDDHRAGKIVVELTGRINKCGVISPRFDMPLQDVEKWVNNLLPARGFGHIVLTTTFGIMDHEEARRKHTGGKILGFFY 187
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BLAST of mRNA_M-pyrifera_M_contig116197.3363.1 vs. uniprot
Match: A0A8E8PJP9_9STRA (Ribosomal protein S15A n=3 Tax=Placidida sp. TaxID=2810146 RepID=A0A8E8PJP9_9STRA)

HSP 1 Score: 179 bits (454), Expect = 2.220e-56
Identity = 82/100 (82.00%), Postives = 93/100 (93.00%), Query Frame = 1 
Query:    1 SKVIIKFLQVMQKNGYIGEFELVDDRRAGKIVVNLTGRINKCGVISPRFDVPVKDMEKWVANLLPSRQFGHVVLTTSQGIMDHEEARKRHTGGKVLGFFY 300
            SKVIIKFLQVMQK+GYI EFE+VDDRR+GKIVV L GR+NKCGVISPRFDV + DMEKW+  LLPSRQFGH+VLTTSQGIMDHEEAR++HTGGK+LGFF+
Sbjct:   31 SKVIIKFLQVMQKHGYINEFEVVDDRRSGKIVVELNGRLNKCGVISPRFDVKIPDMEKWMTTLLPSRQFGHIVLTTSQGIMDHEEARRKHTGGKILGFFF 130
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BLAST of mRNA_M-pyrifera_M_contig116197.3363.1 vs. uniprot
Match: A0A8C4QE04_EPTBU (40S ribosomal protein S15a n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4QE04_EPTBU)

HSP 1 Score: 177 bits (450), Expect = 9.020e-56
Identity = 81/100 (81.00%), Postives = 92/100 (92.00%), Query Frame = 1 
Query:    1 SKVIIKFLQVMQKNGYIGEFELVDDRRAGKIVVNLTGRINKCGVISPRFDVPVKDMEKWVANLLPSRQFGHVVLTTSQGIMDHEEARKRHTGGKVLGFFY 300
            SKVI+KFL VM K+GYIGEFE+VDD RAGK+VVNLTGR+NKCGVISPRFDV +KD+EKW  NLLPSRQFG +VLTTS GIMDHEEARK+HTGGK+LGFF+
Sbjct:   31 SKVIVKFLMVMMKHGYIGEFEIVDDHRAGKVVVNLTGRLNKCGVISPRFDVQLKDLEKWQRNLLPSRQFGFIVLTTSSGIMDHEEARKKHTGGKILGFFF 130
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BLAST of mRNA_M-pyrifera_M_contig116197.3363.1 vs. uniprot
Match: S4RYV1_PETMA (40S ribosomal protein S15a n=9 Tax=Vertebrata TaxID=7742 RepID=S4RYV1_PETMA)

HSP 1 Score: 177 bits (449), Expect = 1.280e-55
Identity = 80/100 (80.00%), Postives = 93/100 (93.00%), Query Frame = 1 
Query:    1 SKVIIKFLQVMQKNGYIGEFELVDDRRAGKIVVNLTGRINKCGVISPRFDVPVKDMEKWVANLLPSRQFGHVVLTTSQGIMDHEEARKRHTGGKVLGFFY 300
            SKVI+KFL VM K+GYIGEFE++DD RAGKIVVNLTGR+NKCGVISPRFDV +KD+EKW  NLLPSRQFG++VLTTS GIMDHEEAR++HTGGK+LGFF+
Sbjct:   31 SKVIVKFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQIKDLEKWQNNLLPSRQFGYIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
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BLAST of mRNA_M-pyrifera_M_contig116197.3363.1 vs. uniprot
Match: A0A6J1TNQ0_FRAOC (40S ribosomal protein S15Aa n=6 Tax=Protostomia TaxID=33317 RepID=A0A6J1TNQ0_FRAOC)

HSP 1 Score: 177 bits (448), Expect = 1.820e-55
Identity = 81/100 (81.00%), Postives = 92/100 (92.00%), Query Frame = 1 
Query:    1 SKVIIKFLQVMQKNGYIGEFELVDDRRAGKIVVNLTGRINKCGVISPRFDVPVKDMEKWVANLLPSRQFGHVVLTTSQGIMDHEEARKRHTGGKVLGFFY 300
            SKVI+KFL VM K GYIGEFE+VDD RAGKIVVNLTGR+NKCGVISPRFDVP++D+EKW  NLLPSRQFG+VVLTTS GIMDHEEAR++H GGK+LGFF+
Sbjct:   31 SKVIVKFLGVMMKKGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPIRDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116197.3363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8E8PJK2_9STRA6.690e-6799.00Ribosomal protein S15A n=2 Tax=Placidida sp. TaxID... [more]
A0A7S3PA85_9STRA9.420e-5884.00Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S1D1S7_CYCTE1.900e-5784.00Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A812JFE9_9DINO3.830e-5783.00RPS15A protein n=2 Tax=Sar TaxID=2698737 RepID=A0A... [more]
A0A8E8U737_9STRA7.730e-5785.00Ribosomal protein S15A n=1 Tax=Suigetsumonas clino... [more]
D7G3J4_ECTSI1.660e-5682.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8E8PJP9_9STRA2.220e-5682.00Ribosomal protein S15A n=3 Tax=Placidida sp. TaxID... [more]
A0A8C4QE04_EPTBU9.020e-5681.0040S ribosomal protein S15a n=1 Tax=Eptatretus burg... [more]
S4RYV1_PETMA1.280e-5580.0040S ribosomal protein S15a n=9 Tax=Vertebrata TaxI... [more]
A0A6J1TNQ0_FRAOC1.820e-5581.0040S ribosomal protein S15Aa n=6 Tax=Protostomia Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116197contigM-pyrifera_M_contig116197:2..373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.2
Seed ortholog evalue1.4e-38
Seed eggNOG ortholog2880.D7G3J4
Preferred namerps15a
KEGG koko:K02957
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009058,GO:0009059,GO:0009987,GO:0010259,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0048856,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0096@1,KOG1754@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons2
Model size303
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116197.3363.1prot_M-pyrifera_M_contig116197.3363.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116197 32..373 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.0112543-UTR-M-pyrifera_M_contig116197:1..311622815679.0112543-UTR-M-pyrifera_M_contig116197:1..31Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116197 2..31 +
1692277518.1244621-UTR-M-pyrifera_M_contig116197:1..311692277518.1244621-UTR-M-pyrifera_M_contig116197:1..31Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116197 2..31 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.024516-CDS-M-pyrifera_M_contig116197:31..441622815679.024516-CDS-M-pyrifera_M_contig116197:31..44Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116197 32..44 +
1692277518.1353211-CDS-M-pyrifera_M_contig116197:31..441692277518.1353211-CDS-M-pyrifera_M_contig116197:31..44Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116197 32..44 +
1622815679.035853-CDS-M-pyrifera_M_contig116197:113..3731622815679.035853-CDS-M-pyrifera_M_contig116197:113..373Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116197 114..373 +
1692277518.1435637-CDS-M-pyrifera_M_contig116197:113..3731692277518.1435637-CDS-M-pyrifera_M_contig116197:113..373Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116197 114..373 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116197.3363.1

>prot_M-pyrifera_M_contig116197.3363.1 ID=prot_M-pyrifera_M_contig116197.3363.1|Name=mRNA_M-pyrifera_M_contig116197.3363.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
MQKNGYIGEFELVDDRRAGKIVVNLTGRINKCGVISPRFDVPVKDMEKWV
ANLLPSRQFGHVVLTTSQGIMDHEEARKRHTGGKVLGFFY*
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mRNA from alignment at M-pyrifera_M_contig116197:2..373+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116197.3363.1 ID=mRNA_M-pyrifera_M_contig116197.3363.1|Name=mRNA_M-pyrifera_M_contig116197.3363.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig116197:2..373+ (Macrocystis pyrifera P11B4 male)
TCCAAGGTCATCATCAAGTTCCTGCAGGTGATGCAGAAGAACGGTGCGTC
CCTCTGCGCCACTCCCGCTCCGCTCCCGCGCTGCTGACGCGTTGTGTGCG
CCTTTACGACAGGCTACATTGGTGAGTTCGAGCTGGTGGACGACCGCCGC
GCGGGCAAGATCGTGGTGAACCTGACCGGGCGCATCAACAAGTGCGGCGT
CATCTCGCCGCGCTTCGACGTGCCGGTGAAGGATATGGAGAAGTGGGTCG
CTAACCTGCTGCCGTCTCGTCAGTTCGGCCACGTCGTCCTGACCACCTCC
CAGGGCATCATGGACCACGAGGAGGCGCGCAAGCGCCACACCGGTGGCAA
GGTGCTGGGCTTCTTCTACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116197:2..373+

>mRNA_M-pyrifera_M_contig116197.3363.1 ID=mRNA_M-pyrifera_M_contig116197.3363.1|Name=mRNA_M-pyrifera_M_contig116197.3363.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig116197:2..373+ (Macrocystis pyrifera P11B4 male)
ATGCAGAAGAACGATGCAGAAGAACGGCTACATTGGTGAGTTCGAGCTGG
TGGACGACCGCCGCGCGGGCAAGATCGTGGTGAACCTGACCGGGCGCATC
AACAAGTGCGGCGTCATCTCGCCGCGCTTCGACGTGCCGGTGAAGGATAT
GGAGAAGTGGGTCGCTAACCTGCTGCCGTCTCGTCAGTTCGGCCACGTCG
TCCTGACCACCTCCCAGGGCATCATGGACCACGAGGAGGCGCGCAAGCGC
CACACCGGTGGCAAGGTGCTGGGCTTCTTCTACTGAGCTACATTGGTGAG
TTCGAGCTGGTGGACGACCGCCGCGCGGGCAAGATCGTGGTGAACCTGAC
CGGGCGCATCAACAAGTGCGGCGTCATCTCGCCGCGCTTCGACGTGCCGG
TGAAGGATATGGAGAAGTGGGTCGCTAACCTGCTGCCGTCTCGTCAGTTC
GGCCACGTCGTCCTGACCACCTCCCAGGGCATCATGGACCACGAGGAGGC
GCGCAAGCGCCACACCGGTGGCAAGGTGCTGGGCTTCTTCTACTGA
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