mRNA_M-pyrifera_M_contig11618.3360.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11618.3360.1
Unique NamemRNA_M-pyrifera_M_contig11618.3360.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig11618.3360.1 vs. uniprot
Match: D8LRQ5_ECTSI (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRQ5_ECTSI)

HSP 1 Score: 262 bits (669), Expect = 3.580e-74
Identity = 235/371 (63.34%), Postives = 249/371 (67.12%), Query Frame = 1 
Query:    1 RSLIARVEALGVGTPRHPSPAADIPPSAGDAASSATNEASPAGGTARGGGSXXXXXXXXXXXXXXXXXXXXXXXXXXRDVGALIILAQVVCSCLRHLRYPRSRLLAMNLLVAFGRCCDDEARLQRLVPYTMTMLEDPVPVVRATAVRSLRALLGMVTSFPPSDSNMFLLYVFPALQRLPSDSSDLVRIAFAESLASLAETSRRFLETAYAMRRAAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKADGNDNGDINGSNXXXXXNDSEGRSSQAHQEVHPSGGRSRREDNKPGGVAANTENGAAQNAGDIGEATGSSLARGGVEAESGPGSGASXXXXXXXXVAAAPGTVLLDGSYDKELSSIRGQV 1113
            RSLIARVEALGVG PR PS      PS   AA S   E  PAG  A             XXXXXXXXXXXXXXXXXX    +LIIL QVVCSCLRHLRYPRSRLL +NLLVAFGRCCDDEARLQRLVPYTMTML+D  PVVRATAVRSLRALLGMVTSFPPSDSN+FLLY+FPALQR+PSDSSDLVRIAFAESLASLAETSRRFLETA+AMRRAAAA XXXXXXXXXXXXXXXXXXXXXXXXXXXX                        SEGR         P GG +   D  PG      E   ++N G                AE+GP  G            ++ GTVLLDGSYDKELSSIRGQ+
Sbjct:    5 RSLIARVEALGVGNPR-PSSGGTARPSPPSAAPS--TEERPAGEAAA-----AVPGPREXXXXXXXXXXXXXXXXXXXXXXSLIILVQVVCSCLRHLRYPRSRLLGLNLLVAFGRCCDDEARLQRLVPYTMTMLDDTAPVVRATAVRSLRALLGMVTSFPPSDSNIFLLYIFPALQRVPSDSSDLVRIAFAESLASLAETSRRFLETAFAMRRAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPT----------------------SEGRRQP------PGGGDATNNDGAPG-AGGKREPEISENDG----------------AEAGPSGGGXAG------TGSSSGTVLLDGSYDKELSSIRGQI 316
[Close]
BLAST of mRNA_M-pyrifera_M_contig11618.3360.1 vs. uniprot
Match: A0A6H5JSX2_9PHAE (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSX2_9PHAE)

HSP 1 Score: 252 bits (644), Expect = 7.830e-71
Identity = 235/394 (59.64%), Postives = 249/394 (63.20%), Query Frame = 1 
Query:    1 RSLIARVEALGVGTPRHPSPAADIPPSAGDAASSATNEASPAGGTARGGGSXXXXXXXXXXXXXXXXXXXXXXXXXXRDVGALIILAQVVCSCLRHLRYPRSRLLAMNLLVAFGRCCDDEARLQRLVPYTMTMLEDPVPVVRATAVRSLRALLGMVTSFPPSDSNMFLLYVFPALQ----------------RLPSDSSDLVRIAFAESLASLAETSRRFLETAYAMRRAAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKADGNDNGDINGSNXXXXXNDSEGRSSQA---HQEVHPSGGRSRREDNKPGGVAANTENGAAQNAG----DIGEATGSSLARGGVEAESGPGSGASXXXXXXXXVAAAPGTVLLDGSYDKELSSIRGQV 1113
            RSLIARVEALG+G PR PS      PS   A  S   E  PAG  A                      XXXXXXXXX    +LIIL QVVCSCLRHLRYPRSRLL +NLLVAFGRCCDDEARLQRLVPYTMTML+D  PVVRATAVRSLRALLGMVTSFPPSDSN+FLLY+FPALQ                R+PSDSSDLVRIAFAESLASLAETSRRFLETAYAMRRAAAA+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                  X  SEGR        QE  PSG         PGG  A  ++GA    G    +I E  G   A  G     G G+G+S             GTVLLDGSYDKELSSIRGQ+
Sbjct:  176 RSLIARVEALGIGNPR-PSSGGTARPSPPSAVPS--TEERPAGEAAA--------AVPGLREGEGEASXXXXXXXXXXXXXSLIILVQVVCSCLRHLRYPRSRLLGLNLLVAFGRCCDDEARLQRLVPYTMTMLDDTAPVVRATAVRSLRALLGMVTSFPPSDSNIFLLYIFPALQVLTAPLREVFFGWLVERVPSDSSDLVRIAFAESLASLAETSRRFLETAYAMRRAAAASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------XXXSEGRRKNDPPDSQEPTPSGPVGNDAPEPPGGGDATNKDGAPGADGKREPEISENDG---AEEGTSGGGGAGTGSSS------------GTVLLDGSYDKELSSIRGQI 527
[Close]
BLAST of mRNA_M-pyrifera_M_contig11618.3360.1 vs. uniprot
Match: A0A0P1AGI3_PLAHL (Non-specific serine/threonine protein kinase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AGI3_PLAHL)

HSP 1 Score: 131 bits (330), Expect = 2.410e-29
Identity = 66/135 (48.89%), Postives = 95/135 (70.37%), Query Frame = 1 
Query:  235 DVGALIILAQVVCSCLRHLRYPRSRLLAMNLLVAFGRCCDDEARLQRLVPYTMTMLEDPVPVVRATAVRSLRALLGMVTSFPPSDSNMFLLYVFPALQRLPSDSSDLVRIAFAESLASLAETSRRFLETAYAMRR 639
            D   ++I+  ++CS LRH++ P S+L A+ L+ A G+   DEARLQRL+PY + +++DP   VRA A+R++  LL +V SFP +D+++F  YV PA+    SD  +LVRI FAE L  LAETSRRFLE A+AM++
Sbjct:  605 DRNGIVIVLSLICSSLRHVQVPESKLTALYLIRALGQYTSDEARLQRLIPYLLEVIDDPSATVRALALRTITYLLSLVKSFPLADASVFPQYVLPAMVPFQSDPDELVRITFAECLPQLAETSRRFLELAHAMKQ 739
[Close]
BLAST of mRNA_M-pyrifera_M_contig11618.3360.1 vs. uniprot
Match: A0A3F2RM04_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RM04_9STRA)

HSP 1 Score: 131 bits (329), Expect = 3.050e-29
Identity = 65/136 (47.79%), Postives = 96/136 (70.59%), Query Frame = 1 
Query:  232 RDVGALIILAQVVCSCLRHLRYPRSRLLAMNLLVAFGRCCDDEARLQRLVPYTMTMLEDPVPVVRATAVRSLRALLGMVTSFPPSDSNMFLLYVFPALQRLPSDSSDLVRIAFAESLASLAETSRRFLETAYAMRR 639
            +D   ++I+  ++CS LRH++ P S+L A+ L+ + G+   DEARLQRL+PY + +++DP   VRA A+R++  LL +V SFP +D+++F  YV PA+    SD  +LVRI FAE L  LAETSRRFLE A+AM++
Sbjct:  580 QDRNGIVIILSLICSSLRHVQVPESKLTALYLIRSLGQFTSDEARLQRLIPYLLEVIDDPSATVRALALRTITYLLSLVESFPLADASVFPQYVLPAMVPFQSDPDELVRITFAECLPQLAETSRRFLEIAHAMKQ 715
[Close]
BLAST of mRNA_M-pyrifera_M_contig11618.3360.1 vs. uniprot
Match: A0A484DWH5_BRELC (Non-specific serine/threonine protein kinase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DWH5_BRELC)

HSP 1 Score: 130 bits (326), Expect = 7.950e-29
Identity = 65/135 (48.15%), Postives = 94/135 (69.63%), Query Frame = 1 
Query:  235 DVGALIILAQVVCSCLRHLRYPRSRLLAMNLLVAFGRCCDDEARLQRLVPYTMTMLEDPVPVVRATAVRSLRALLGMVTSFPPSDSNMFLLYVFPALQRLPSDSSDLVRIAFAESLASLAETSRRFLETAYAMRR 639
            D   ++I+  ++CS LRH++ P S+L A+ L+ A G+   DEARLQRL+PY + +++DP   VRA A+R++  LL +V  FP +D+++F  YV PA+    SD  +LVRI FAE L  LAETSRRFLE A+AM++
Sbjct:  598 DRNGIVIVLSLICSSLRHVQVPESKLTALYLIRALGQFTSDEARLQRLIPYLLEVIDDPSAAVRALALRTIAFLLSLVEQFPLADASVFPQYVLPAMVPFQSDPDELVRITFAECLPQLAETSRRFLEIAHAMKQ 732
[Close]
BLAST of mRNA_M-pyrifera_M_contig11618.3360.1 vs. uniprot
Match: A0A662WUP7_9STRA (Non-specific serine/threonine protein kinase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WUP7_9STRA)

HSP 1 Score: 130 bits (326), Expect = 7.980e-29
Identity = 65/136 (47.79%), Postives = 95/136 (69.85%), Query Frame = 1 
Query:  232 RDVGALIILAQVVCSCLRHLRYPRSRLLAMNLLVAFGRCCDDEARLQRLVPYTMTMLEDPVPVVRATAVRSLRALLGMVTSFPPSDSNMFLLYVFPALQRLPSDSSDLVRIAFAESLASLAETSRRFLETAYAMRR 639
            +D   ++I+  ++CS LRH++ P S+L A+ L+ A G+   DEARLQRL+PY + +++DP   VRA A+R++  LL +V SFP +D+++F  YV PA+    SD  +LVRI FAE L  LA TSRRFLE A+AM++
Sbjct:  608 QDRNGIVIILSLICSSLRHVQVPESKLTALYLIRALGQFTSDEARLQRLIPYLLEVIDDPSATVRALALRTITFLLSLVESFPLADASVFPQYVLPAMVPFQSDPDELVRITFAECLPQLAATSRRFLEIAHAMKQ 743
[Close]
BLAST of mRNA_M-pyrifera_M_contig11618.3360.1 vs. uniprot
Match: A0A3M6VE65_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VE65_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.420e-28
Identity = 64/135 (47.41%), Postives = 95/135 (70.37%), Query Frame = 1 
Query:  235 DVGALIILAQVVCSCLRHLRYPRSRLLAMNLLVAFGRCCDDEARLQRLVPYTMTMLEDPVPVVRATAVRSLRALLGMVTSFPPSDSNMFLLYVFPALQRLPSDSSDLVRIAFAESLASLAETSRRFLETAYAMRR 639
            D   ++I+  ++CS LRH++ P S+L ++ L+ + G+   DEARLQRL+PY + +++DP   VRA A+R++  LL +V SFP +D+++F  YV PA+    SD  +LVRI FAE L  LAETSRRFLE A+AM++
Sbjct:  440 DRNGIVIILSLICSSLRHVQVPESKLTSLYLVRSLGQFTSDEARLQRLIPYLLEVIDDPSAAVRALALRTITFLLSLVASFPLADASVFPQYVLPAMIPFQSDPDELVRITFAECLPQLAETSRRFLEIAHAMKQ 574
[Close]
BLAST of mRNA_M-pyrifera_M_contig11618.3360.1 vs. uniprot
Match: A0A6A5AKC0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AKC0_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.830e-28
Identity = 65/135 (48.15%), Postives = 91/135 (67.41%), Query Frame = 1 
Query:  241 GALIILAQVVCSCLRHLRYPRSRLLAMNLLVAFGRCCDDEARLQRLVPYTMTMLEDPVPVVRATAVRSLRALLGMVTSFPPSDSNMFLLYVFPALQRLPSDSSDLVRIAFAESLASLAETSRRFLETAYAMRRAA 645
            G +I+L+ ++CS LRH + P+S+L  + L+   G   DDE RLQRL+PY M +L+D    VRA A+R + +L+ +VT  P SD+ +F  Y+ PALQ  P D  + VRIAFAE L  LAETSRRFLE + A+++ A
Sbjct:   30 GIMIVLS-LLCSSLRHCQVPQSKLTGLQLISRLGAHADDEVRLQRLIPYVMEVLDDANAAVRAAAIRCITSLVSVVTVLPLSDAAVFPQYILPALQNFPVDVEESVRIAFAECLPLLAETSRRFLEISCALKQRA 163
[Close]
BLAST of mRNA_M-pyrifera_M_contig11618.3360.1 vs. uniprot
Match: A0A6A3T4I0_9STRA (Non-specific serine/threonine protein kinase n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3T4I0_9STRA)

HSP 1 Score: 127 bits (320), Expect = 4.760e-28
Identity = 64/135 (47.41%), Postives = 94/135 (69.63%), Query Frame = 1 
Query:  235 DVGALIILAQVVCSCLRHLRYPRSRLLAMNLLVAFGRCCDDEARLQRLVPYTMTMLEDPVPVVRATAVRSLRALLGMVTSFPPSDSNMFLLYVFPALQRLPSDSSDLVRIAFAESLASLAETSRRFLETAYAMRR 639
            D   ++I+  ++CS LRH++ P S+L A+ L+ + G+   DEARLQRL+PY + +++D    VRA A+R++  LL +V SFP +D+++F  YV PA+    SD  +LVRI FAE L  LAETSRRFLE A+AM++
Sbjct:  601 DRNGIVIILSLICSSLRHVQVPESKLTALYLIRSLGQFTSDEARLQRLIPYLLEVIDDASATVRALALRTITYLLSLVESFPLADASVFPQYVLPAMVPFQSDPDELVRITFAECLPQLAETSRRFLEIAHAMKQ 735
[Close]
BLAST of mRNA_M-pyrifera_M_contig11618.3360.1 vs. uniprot
Match: H3GYM4_PHYRM (Non-specific serine/threonine protein kinase n=16 Tax=Phytophthora TaxID=4783 RepID=H3GYM4_PHYRM)

HSP 1 Score: 127 bits (319), Expect = 6.420e-28
Identity = 63/136 (46.32%), Postives = 96/136 (70.59%), Query Frame = 1 
Query:  232 RDVGALIILAQVVCSCLRHLRYPRSRLLAMNLLVAFGRCCDDEARLQRLVPYTMTMLEDPVPVVRATAVRSLRALLGMVTSFPPSDSNMFLLYVFPALQRLPSDSSDLVRIAFAESLASLAETSRRFLETAYAMRR 639
            +D   ++I+  ++CS LR+++ P S++ A+ L+ + G+   DEARLQRL+PY + +++DP   VRA A+R++  LL +V SFP +D+++F  YV PA+    SD  +LVRI FAE L  LAETSRRFLE A+AM++
Sbjct:  604 QDRNGIVIILSLICSSLRNVQVPESKVTALYLIRSLGQFTSDEARLQRLIPYLLEVIDDPSAAVRALALRTITYLLSLVESFPLADASVFPQYVLPAMVPFQSDPDELVRITFAECLPQLAETSRRFLEIAHAMKQ 739
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11618.3360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRQ5_ECTSI3.580e-7463.34Non-specific serine/threonine protein kinase n=1 T... [more]
A0A6H5JSX2_9PHAE7.830e-7159.64Non-specific serine/threonine protein kinase n=1 T... [more]
A0A0P1AGI3_PLAHL2.410e-2948.89Non-specific serine/threonine protein kinase n=1 T... [more]
A0A3F2RM04_9STRA3.050e-2947.79Non-specific serine/threonine protein kinase n=1 T... [more]
A0A484DWH5_BRELC7.950e-2948.15Non-specific serine/threonine protein kinase n=1 T... [more]
A0A662WUP7_9STRA7.980e-2947.79Non-specific serine/threonine protein kinase n=2 T... [more]
A0A3M6VE65_9STRA1.420e-2847.41Non-specific serine/threonine protein kinase n=1 T... [more]
A0A6A5AKC0_9STRA1.830e-2848.15Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6A3T4I0_9STRA4.760e-2847.41Non-specific serine/threonine protein kinase n=4 T... [more]
H3GYM4_PHYRM6.420e-2846.32Non-specific serine/threonine protein kinase n=16 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11618contigM-pyrifera_M_contig11618:3907..9774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score210.3
Seed ortholog evalue1.1e-51
Seed eggNOG ortholog2880.D8LRQ5
KEGG koko:K08333
KEGG Pathwayko04136,ko04138,ko04140,ko04371,map04136,map04138,map04140,map04371
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005768,GO:0005770,GO:0005942,GO:0006464,GO:0006468,GO:0006605,GO:0006623,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016236,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019898,GO:0030242,GO:0031410,GO:0031967,GO:0031975,GO:0031982,GO:0032507,GO:0032991,GO:0033036,GO:0033365,GO:0034067,GO:0034271,GO:0034272,GO:0034613,GO:0035032,GO:0036211,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044232,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045053,GO:0045184,GO:0045185,GO:0045324,GO:0046907,GO:0051179,GO:0051234,GO:0051235,GO:0051641,GO:0051649,GO:0051651,GO:0061695,GO:0061919,GO:0065007,GO:0065008,GO:0070727,GO:0071561,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072665,GO:0072666,GO:0097708,GO:0098796,GO:0140096,GO:1901564,GO:1902494,GO:1990234
EggNOG free text desc.autophagy of peroxisome
EggNOG OGsKOG1240@1,KOG1240@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04131
Exons5
Model size1244
Cds size798
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815678.774911-UTR-M-pyrifera_M_contig11618:3906..40181622815678.774911-UTR-M-pyrifera_M_contig11618:3906..4018Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11618 3907..4018 +
1692277517.9925034-UTR-M-pyrifera_M_contig11618:3906..40181692277517.9925034-UTR-M-pyrifera_M_contig11618:3906..4018Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11618 3907..4018 +
1622815678.7901325-UTR-M-pyrifera_M_contig11618:4114..43201622815678.7901325-UTR-M-pyrifera_M_contig11618:4114..4320Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11618 4115..4320 +
1692277518.0039492-UTR-M-pyrifera_M_contig11618:4114..43201692277518.0039492-UTR-M-pyrifera_M_contig11618:4114..4320Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11618 4115..4320 +
1622815678.8671358-UTR-M-pyrifera_M_contig11618:9646..97741622815678.8671358-UTR-M-pyrifera_M_contig11618:9646..9774Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11618 9647..9774 +
1692277518.0655313-UTR-M-pyrifera_M_contig11618:9646..97741692277518.0655313-UTR-M-pyrifera_M_contig11618:9646..9774Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11618 9647..9774 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815678.807096-CDS-M-pyrifera_M_contig11618:4320..43861622815678.807096-CDS-M-pyrifera_M_contig11618:4320..4386Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11618 4321..4386 +
1692277518.0129879-CDS-M-pyrifera_M_contig11618:4320..43861692277518.0129879-CDS-M-pyrifera_M_contig11618:4320..4386Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11618 4321..4386 +
1622815678.8225708-CDS-M-pyrifera_M_contig11618:5240..53841622815678.8225708-CDS-M-pyrifera_M_contig11618:5240..5384Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11618 5241..5384 +
1692277518.030248-CDS-M-pyrifera_M_contig11618:5240..53841692277518.030248-CDS-M-pyrifera_M_contig11618:5240..5384Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11618 5241..5384 +
1622815678.8375401-CDS-M-pyrifera_M_contig11618:7996..82151622815678.8375401-CDS-M-pyrifera_M_contig11618:7996..8215Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11618 7997..8215 +
1692277518.042315-CDS-M-pyrifera_M_contig11618:7996..82151692277518.042315-CDS-M-pyrifera_M_contig11618:7996..8215Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11618 7997..8215 +
1622815678.8552196-CDS-M-pyrifera_M_contig11618:9277..96461622815678.8552196-CDS-M-pyrifera_M_contig11618:9277..9646Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11618 9278..9646 +
1692277518.0539794-CDS-M-pyrifera_M_contig11618:9277..96461692277518.0539794-CDS-M-pyrifera_M_contig11618:9277..9646Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11618 9278..9646 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11618.3360.1prot_M-pyrifera_M_contig11618.3360.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11618 4321..9646 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11618.3360.1

>prot_M-pyrifera_M_contig11618.3360.1 ID=prot_M-pyrifera_M_contig11618.3360.1|Name=mRNA_M-pyrifera_M_contig11618.3360.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=266bp
MNLLVAFGRCCDDEARLQRLVPYTMTMLEDPVPVVRATAVRSLRALLGMV
TSFPPSDSNMFLLYVFPALQRLPSDSSDLVRIAFAESLASLAETSRRFLE
TAYAMRRAAAATAAVSAAATAAAAASGVAAAAAAAAAAGGAAAKADGNDN
GDINGSNTNTNINDSEGRSSQAHQEVHPSGGRSRREDNKPGGVAANTENG
AAQNAGDIGEATGSSLARGGVEAESGPGSGASGGGGGGGGVAAAPGTVLL
DGSYDKELSSIRGQV*
back to top

mRNA from alignment at M-pyrifera_M_contig11618:3907..9774+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11618.3360.1 ID=mRNA_M-pyrifera_M_contig11618.3360.1|Name=mRNA_M-pyrifera_M_contig11618.3360.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5868bp|location=Sequence derived from alignment at M-pyrifera_M_contig11618:3907..9774+ (Macrocystis pyrifera P11B4 male)
AGGTCCCTCATAGCCCGTGTCGAAGCTCTCGGCGTGGGCACGCCTCGTCA
TCCTTCCCCGGCCGCCGATATCCCGCCCTCTGCTGGGGACGCGGCCTCCT
CTGCGACTAACGGTACTGCTACCACCACCACCACCGCTACCACCACCAAG
CAGATGGCGACCGCAGACGAAGCGGATGAATCGGGGTCCCAGAAAGGAGA
AAGGCTAGAGGCTAGTCCCGCCGGTGGCACCGCTCGTGGTGGCGGTAGCG
GTGACGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGAGGGGGGGTGGT
GATGGGGGCGACGGGGGCGACGGGGGGCGCGATGTCGGCGCTTTGATCAT
CTTGGCGCAGGTGGTGTGCTCGTGCCTCCGCCACCTGCGATACCCGCGGA
GCCGCCTCCTTGCGATGAACCTGCTCGTGGCGTTCGGGCGCTGCTGCGAC
GACGAGGCGAGGCTCCAGAGACTTGTACCGGTGAGAGATATTAAAAATAT
ATATATATCTTCATTTCTTTTTTGGTGGATGGGTTGGGGGAAAGGGGAGG
GGGAGGGGGGGAGGGGGGAAGGTGACGGGGGAGGTGGGGCAGAGGGGAGG
GAGGGAGGGAGGGAGGGAGGGGGGAGGGGGGCGATCTGGCAGGTTTGCCC
GCCAGAGCCAACTTTCCCCGCCCCGTCCCCGACCCAATCCGGCGTTCCTT
CGCTGTAAGACGCGGCGGCACCTAAACGTCGGCGTCCGCTAGAGTTTACA
GATGCACTGCCACAAGGTACGGCATCGCATTTGGTGCCGGAGTCAGATCG
GCATGCCGACTCCCTTCTAAGCTGCCCGCTCCACACCACACCGCACCACA
CCGCACCGCACCGCATCGCACCGCACCGCACCGCACCACGCCGAGCCGCA
CACTGGCTCGTTGGCCGACCCCTTGGTCCGCTGGCTGGCCGGCTTTCTCG
CCCGACACACCACGTGTATGTGCAGTTACGCTCGCAAATGGTGCAAGCAT
TCGACTGTCAATACCTACCCGCCCTTAACCCCGCCCCCGTCCCCCAACCC
AGCACCCGACCTCCCCAAACCCGACCCCCGTCCCCACTCCCACCCCCCCC
CGCCCCCACTCCCGCCCCATTCCCATCCCCACCCCTGGCCCCACCCTCGC
CCCCACCCCCTAAACCACCCCCACGCCCGCTCTGCTCCGTCTCGAAAGGG
ATGCGTGGTCAAAGATCAAATGACTAAGGCAAGCTGCAAATGATTATCCC
CACCACCACCACCACCACCCCCGCTCTTACCCCCGCCCGCACTCCCGCCC
TTCGTGATGGTGGACGTCTTGGCTTGGTTGTCAGTACACGATGACGATGC
TGGAGGACCCTGTGCCGGTGGTAAGGGCGACGGCGGTGCGGTCTCTCCGA
GCTCTGCTGGGCATGGTGACGTCTTTCCCCCCCAGCGACTCCAACATGTT
CCTGCTTTACGTCTTCCCCGCGCTTCAGGTGGGATAGATGATGGAGTCGA
TTTGGGTCAGGTCGATGGTTCGGTTTGAGTTTTTTGTTTTGTTTTGTTTT
GATTGACTTAACATTTGATGCGGGGTGGTGCGGTGCGGTTCGGTTTGATC
CGGTGCAGTGCGGTTCAGTGCGGTTCGATCCTGTTCGGTTCGGTTCGGTT
CGATTCGGTTCGTTTCGTTTCGGTTCGGTTCGGTTCGGTTCGGTTTGGTT
CGGTTCGGTTCGGTTCGGTTCGATCCGACTCGGTTCCAGTCGGCTCTGTT
TTGACCGTTCGGTTAGGTTCCGTTCTATTCCGTTGCGTTCGCCGTCGCCG
CATTTTTTCGTCCGCCCTACCCCCCCCCCCCGCCCGACCCCCTCCTCTTC
GTCCTCCTCCATCTCCTTCTGGCTGTTCTGTTTGTCCGCCCGCGTCGCTT
TTTTTTTGTCAATTCCCGCCGCCTGCAAATATGCGCTAGCGTATTTGTGA
GTATTTTTTTTCTGCTATACATAGTGTCACCTTGCTCCGCACCACGCCAA
AACACGCTGTCCATGGTCAAACACTACGGTGTACAAGGTTCCCCCCCCCG
GGACATGCCTATTATAGGGGAGTGACAACAAGAACGAACTGAAAACGATA
CAGCATGCAATATTGTATGTATGTATCATACGCGTATATATGATACAAAA
GTTTCACGACGATACGAAATATCTCCATGTTTCTGCTGTACGTACAAATG
TGTACCGGGTATGTACAGCGGAAAACCCTTTTTTAGAACTGCGTCTGCAT
TTTTGGGGGGACGAAACATGCATGAAAATAGTGTGGAACTTTTTCTGTTG
ACTGAATCGTTTTTGTAGGTTTTCTTGGTGGCTCCGCCAAACACTGACCT
TATAAATATATGTATATGTATTTGTTGTGGCGCTCACGTCGAAGAAGGCC
TCTCCCGCACGAAACCGAGGACTGCCAACAAAAAAAAAAGAGGTTTGGAA
GCACTCCACGCGTGACACACGGCACACACACACACACACACGTGACACAC
GGAACACAGCAGTACAGCATAACAGTGGGATAATGTTTACAGAAATAGAA
AAGGATGCACGGAAGAAGGGGCTGGAACTCTCGACCACTCTCGGCTGTCC
ACGAGAATCTCACTGCAGCAGCACCAGCAGCACCAGCAGCACCAGCAGCA
CCAGCAGCACCAGCAGCAGCAGCAGCGTTGTTGTATCTGTGTCAGCACAG
CATGTCAGCATGCATGTAGAAGTATCGCACAGCATCAGAGACCCCCAGCT
TTGCGTGTCGCCGGGTCCGATACAAACGCAACTGCGTACTACAGCAATAG
GAAACCACAGCAATACAGCGCGGACAAACTGCCGCATGCGCGTGATGTTG
CTTCCTTCTCTGCTGGGCGGGCGGCAGGCGTGTTTAGCGTTGTAGCCAGC
TGGTTGTAGCACGCGGCCTGTACTGCTGTCTGCTGTCTGCTCATGTGCTC
ATGTGCTCTTTGTTGTCTGTGGTGTCTGGGTACGTACATTATACCAGAAA
AAAAAAAAGTGGAAACAAAAATAGACATGATTATCTGCGAGGAATGGCAG
ACGCGTCGTCAAGTCCAAAATTGAGCATCGTGACCATTTTACTGTATCAA
CGAAGATCAATATATTAACCTGGTATTATTTTTGGCGGCGCGCACGACGC
ACAGCAGCACAGCAGAAGAGAGAGAGAGAAAGAGGTGGTGATGACAGATG
GCGGATCGCAGCCTCCGGTAAAGCAACTAGCCGTAGCAGTACACCCCGGA
CCTGCGACACGCGCGTGGTGTGGCCCGCTGCTGCTTGTGCCGCCAGGCTA
GGTTGTAACGTTTTTTGTGCTCTTTGCATGTTGTCTGATGTCTAGATTTC
TTGGGTGTGCCTCGGCCAAGCATCACAAAACGTCGGAAATATAACGATAG
TTGAGGCAGTCATGTTTAATCCAAAAGGTCCTTACATCTCCGTCCAGAGC
GTGCGCGGATCTGTCTCACACATAGAGCAGCAGCAAAGAGAAGGTAGATG
GTGGATTGCGGGCCGCAGGCTCAGATAGACACAACTAGCCACAGCAGTGC
AGCGTAGATGGGTGTGTCACACACGCACGGTGTTGCCTGTTGGTGCTTAT
TAGTTGCAGCGTTGTAATGTTCTGCTCTCTGCCTGTTGTCTGGTGCCTAC
CTTGTACGAGTCTGGGCGGTGTGCTCCTGAAAGGGCAAAAATCTGACGAC
ATTTTACCGGTACGTACGTACAAAATAAGGCCTGTCGTACTAAAACCAGG
GAAATCGTCTTTTCCACTCCCGCCGAAAAAAAATCTGTGAGGGCTTGCCA
CGCACTCCAGAGGGCACGGGTCGCGCCCGGACCTCGACCAATGTGTCCGG
ACGGGCTTCCGGTGTCGACTACTTGGCATTTTTGCTAAAAAAAGTGCTCG
TACGAGGAGATAGGTTCGAAAAAGTACGAAAAGTTCACCAACGTAACTAT
TAACATGACGTTACCTCTTGCTCTACCAAGGCTGGCACCTCTGGTTGCGC
AAGAAACACACACCACGACAAAAAAAAAATGCTTGCACCACCGCTTGCAC
CACCGCTTACGCTTGTTTGGTTTTGTTTTTTGTTTCGCAGCGCCTTCCAT
CGGACTCGTCGGATCTAGTGCGCATCGCCTTTGCCGAAAGCCTCGCGTCG
CTGGCCGAGACCAGCAGGAGGTTTTTGGAAACGGCGTACGCCATGCGCCG
GGCCGCTGCTGCCACCGCGGCCGTGTCTGCTGCGGCCACGGCCGCTGCCG
CTGCCTCGGGGGTGGCAGCGGCGGCGGCGGCGGCGGCGGCTGCAGGGGGG
GCGGCGGCGGTAGGAGGTCTGGAGGCGGGGGTGGGGGCGGGGGCGGGGGC
GGGGGTGGCGGTTGGGGTGGGGGCAGGGGGTTCCGCCTCGGCCATCGGTG
TTCAGGTAGGCTGTTCATGAAACCTGCTGATGTTGAGTTTGTTCATGAGG
TTGGGTTGTCGTTCACGAGATTTGATCCGTCTTGGGGGGTTGTTGTTTTC
GACTACCCACGAAGCTGATATTGGGTTTTGCTCAACATGAGATTGGTGGT
CTGGGGTTGGTAGGTTGTGAAGCTCGCACACTCCGAGCAGACAGATAATC
GATTTCTGCTTGTTGACCTACTGTACAAAGTTTTTGTATGACCTACTGTA
GCTCATTGTTGGCGGGGTGGGAGCCGTAAAAAATCGGCACGATTTAGCGC
ATGTTTCCTGGGTTGGATCTATCTGTACCATGCAGGTCCTGCACACACAC
AACCCCCTCACAACGACAACGGCAGGTGGTGAACTACAGTAGATGATCTA
CAAGTATCTGATAGACAGATCATGAGCTGTTCGAGGGAACTACAGTAGAT
GATCTGTTGTCTGTGGGACCCTACTGGCCGTCGGGGCTAGTGATGTACCA
AATCTCGGGTTTGTATGTGAAAACGGCACGCCTCGGGTTATTGATGTGAT
AAATAGCCTTTTTGGGGGGGGGGGGCGGTTGGGGGGGGATGTCTTTTTTC
AGTTTTTTTTGTTTCGTGAACGAAACTCGGACGTGGTGAAACGAGACCTC
GCGCCGGGTTGTAGTTTTGAACCTACAAAAGCTGCATTTTGTTCTTGAAA
CCTGCCCACCTTGCGGGTTTGTTCGGACGCGTCCCTCACGCTGTTCATCC
TCGCGAAGCTTAAACTGGCTGAGCTGGGGTTGGGGTCGGGGCTTGCCTCA
TCTTTGCTTCTAACCGCGACCAAGGTGTCCTCGTTCGTGTGTTCCGACCG
CTTTTTTTTTTTTTTTTCGTTGGGACTTCGACACTGTCTTTCCCTGGTAA
ATACCCCGCCACAATACCCCGACGCACTATCCCGACGTATCACACCGAAG
GTACCGACCGGCCCTCCGAAGAAAGCCGACGGCAACGATAACGGCGACAT
CAATGGTAGCAACACCAACACCAACATCAATGACAGCGAGGGCCGCAGCA
GTCAAGCCCACCAAGAAGTTCACCCATCAGGCGGTCGGTCACGGCGCGAG
GATAATAAACCAGGAGGAGTCGCAGCAAACACGGAAAACGGAGCTGCTCA
GAATGCTGGTGATATCGGGGAGGCGACAGGGAGTTCCTTGGCTAGAGGCG
GTGTGGAAGCGGAATCGGGGCCAGGTTCGGGAGCGAGTGGGGGCGGAGGA
GGAGGAGGAGGGGTGGCGGCCGCGCCCGGCACGGTTTTGCTCGACGGGAG
CTACGACAAGGAGCTTTCGTCTATTCGCGGTCAGGTGTGAGGGGAGGGGA
GGGAACGGGAGGGGGAGGGGAAGAGAGGGGAGGGGAAGGGGGGGGGGGGG
GGGGGAAAGGGAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGAGGGGGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig11618:3907..9774+

>mRNA_M-pyrifera_M_contig11618.3360.1 ID=mRNA_M-pyrifera_M_contig11618.3360.1|Name=mRNA_M-pyrifera_M_contig11618.3360.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1596bp|location=Sequence derived from alignment at M-pyrifera_M_contig11618:3907..9774+ (Macrocystis pyrifera P11B4 male)
ATGAACCTGCTCGTGGCGTTCGGGCGCTGCTGCGACGACGAGGCGAGGCT
CCAGAGACTTGTACCGATGAACCTGCTCGTGGCGTTCGGGCGCTGCTGCG
ACGACGAGGCGAGGCTCCAGAGACTTGTACCGTACACGATGACGATGCTG
GAGGACCCTGTGCCGGTGGTAAGGGCGACGGCGGTGCGGTCTCTCCGAGC
TCTGCTGGGCATGGTGACGTCTTTCCCCCCCAGCGACTCCAACATGTTCC
TGCTTTACGTCTTCCCCGCGCTTCAGTACACGATGACGATGCTGGAGGAC
CCTGTGCCGGTGGTAAGGGCGACGGCGGTGCGGTCTCTCCGAGCTCTGCT
GGGCATGGTGACGTCTTTCCCCCCCAGCGACTCCAACATGTTCCTGCTTT
ACGTCTTCCCCGCGCTTCAGCGCCTTCCATCGGACTCGTCGGATCTAGTG
CGCATCGCCTTTGCCGAAAGCCTCGCGTCGCTGGCCGAGACCAGCAGGAG
GTTTTTGGAAACGGCGTACGCCATGCGCCGGGCCGCTGCTGCCACCGCGG
CCGTGTCTGCTGCGGCCACGGCCGCTGCCGCTGCCTCGGGGGTGGCAGCG
GCGGCGGCGGCGGCGGCGGCTGCAGGGGGGGCGGCGGCGCGCCTTCCATC
GGACTCGTCGGATCTAGTGCGCATCGCCTTTGCCGAAAGCCTCGCGTCGC
TGGCCGAGACCAGCAGGAGGTTTTTGGAAACGGCGTACGCCATGCGCCGG
GCCGCTGCTGCCACCGCGGCCGTGTCTGCTGCGGCCACGGCCGCTGCCGC
TGCCTCGGGGGTGGCAGCGGCGGCGGCGGCGGCGGCGGCTGCAGGGGGGG
CGGCGGCGAAAGCCGACGGCAACGATAACGGCGACATCAATGGTAGCAAC
ACCAACACCAACATCAATGACAGCGAGGGCCGCAGCAGTCAAGCCCACCA
AGAAGTTCACCCATCAGGCGGTCGGTCACGGCGCGAGGATAATAAACCAG
GAGGAGTCGCAGCAAACACGGAAAACGGAGCTGCTCAGAATGCTGGTGAT
ATCGGGGAGGCGACAGGGAGTTCCTTGGCTAGAGGCGGTGTGGAAGCGGA
ATCGGGGCCAGGTTCGGGAGCGAGTGGGGGCGGAGGAGGAGGAGGAGGGG
TGGCGGCCGCGCCCGGCACGGTTTTGCTCGACGGGAGCTACGACAAGGAG
CTTTCGTCTATTCGCGGTCAGGTGTGAAAAGCCGACGGCAACGATAACGG
CGACATCAATGGTAGCAACACCAACACCAACATCAATGACAGCGAGGGCC
GCAGCAGTCAAGCCCACCAAGAAGTTCACCCATCAGGCGGTCGGTCACGG
CGCGAGGATAATAAACCAGGAGGAGTCGCAGCAAACACGGAAAACGGAGC
TGCTCAGAATGCTGGTGATATCGGGGAGGCGACAGGGAGTTCCTTGGCTA
GAGGCGGTGTGGAAGCGGAATCGGGGCCAGGTTCGGGAGCGAGTGGGGGC
GGAGGAGGAGGAGGAGGGGTGGCGGCCGCGCCCGGCACGGTTTTGCTCGA
CGGGAGCTACGACAAGGAGCTTTCGTCTATTCGCGGTCAGGTGTGA
back to top