mRNA_M-pyrifera_M_contig116179.3359.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116179.3359.1
Unique NamemRNA_M-pyrifera_M_contig116179.3359.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116179.3359.1 vs. uniprot
Match: A0A7S4HNK8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HNK8_9EUKA)

HSP 1 Score: 98.6 bits (244), Expect = 4.760e-23
Identity = 56/72 (77.78%), Postives = 64/72 (88.89%), Query Frame = 1
Query:    7 SELEAALAELKAQEDAYAARTAELERKSEEGGVVSRNRAKNELAQHLAEDPLPLRRAKINMEAAVRKADRAT 222
            SELEAAL EL+ QEDAY ++  ELERKSEEGGVVS+N+AK ELAQHLAEDPLPLR+AKI  EAAV+KA+RAT
Sbjct:   83 SELEAALQELQKQEDAYESKKKELERKSEEGGVVSKNKAKAELAQHLAEDPLPLRKAKITQEAAVKKAERAT 154          
BLAST of mRNA_M-pyrifera_M_contig116179.3359.1 vs. uniprot
Match: A0A7S4JXR2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4JXR2_9EUKA)

HSP 1 Score: 97.4 bits (241), Expect = 1.740e-22
Identity = 60/82 (73.17%), Postives = 70/82 (85.37%), Query Frame = 1
Query:    1 AQSELEAALAELKAQEDAYAARTAELERKSEEG--GVVSRNRAKNELAQHLAEDPLPLRRAKINMEAAVRKADRATQAAADA 240
            AQ+ELEAALAE+K QEDAY  +TA L  KSE+   GVV+RNR KNELAQHLAEDPLPLR+AKI  EAAVRKA++AT+AAA+A
Sbjct:   12 AQAELEAALAEVKKQEDAYNQKTATLTAKSEDESLGVVTRNRTKNELAQHLAEDPLPLRQAKITAEAAVRKAEKATKAAAEA 93          
BLAST of mRNA_M-pyrifera_M_contig116179.3359.1 vs. uniprot
Match: A0A7S4JXG1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4JXG1_9EUKA)

HSP 1 Score: 91.7 bits (226), Expect = 3.790e-21
Identity = 56/76 (73.68%), Postives = 64/76 (84.21%), Query Frame = 1
Query:   19 AALAELKAQEDAYAARTAELERKSEEG--GVVSRNRAKNELAQHLAEDPLPLRRAKINMEAAVRKADRATQAAADA 240
            AALAE+K QEDAY  +TA L  KSE+   GVV+RNR KNELAQHLAEDPLPLR+AKI  EAAVRKA++AT+AAADA
Sbjct:    1 AALAEVKKQEDAYNQKTASLTAKSEDESLGVVTRNRTKNELAQHLAEDPLPLRQAKITAEAAVRKAEKATKAAADA 76          
BLAST of mRNA_M-pyrifera_M_contig116179.3359.1 vs. uniprot
Match: A0A6U1WWW6_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A6U1WWW6_9EUKA)

HSP 1 Score: 96.7 bits (239), Expect = 6.380e-21
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 1
Query:    1 AQSELEAALAELKAQEDAYAARTAELERKSEEGGVVSRNRAKNELAQHLAEDPLPLRRAKINMEAAVRKADRATQAAADA 240
            AQ ELE ALA L A+E AY  + AELERKS EGGVVS N+AKNELAQHLAEDPLPLRRAKI  EAAV++A++A++ +ADA
Sbjct:  380 AQKELEEALAALHAEEKAYNDKKAELERKSTEGGVVSMNKAKNELAQHLAEDPLPLRRAKITAEAAVKRAEKASKVSADA 459          
BLAST of mRNA_M-pyrifera_M_contig116179.3359.1 vs. uniprot
Match: L8GVG0_ACACA (TolAlike protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GVG0_ACACA)

HSP 1 Score: 94.0 bits (232), Expect = 8.750e-21
Identity = 55/77 (71.43%), Postives = 67/77 (87.01%), Query Frame = 1
Query:    1 AQSELEAALAELKAQEDAYAARTAELERKSEEGGVVSRNRAKNELAQHLAEDPLPLRRAKINMEAAVRKADRATQAA 231
            A+ EL+AAL ++K QEDA   +TAEL++KSEEGG+VSRNRAK ELAQHLAEDPLPLR+AKI +EAAV+KAD+A  AA
Sbjct:  158 AKRELDAALKDVKDQEDARNNKTAELQKKSEEGGLVSRNRAKAELAQHLAEDPLPLRKAKITLEAAVKKADKAAIAA 234          
BLAST of mRNA_M-pyrifera_M_contig116179.3359.1 vs. uniprot
Match: L8GWT1_ACACA (TolA, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GWT1_ACACA)

HSP 1 Score: 93.2 bits (230), Expect = 6.350e-20
Identity = 51/69 (73.91%), Postives = 59/69 (85.51%), Query Frame = 1
Query:   37 KAQEDAYAARTAELERKSEEGGVVSRNRAKNELAQHLAEDPLPLRRAKINMEAAVRKADRATQAAADAT 243
            KAQEDA+  RTAEL+R SEEG +V +N+AKNELAQHL+ DPLPLRRAKI  EAAV+KADRA QAA +AT
Sbjct:  233 KAQEDAFNGRTAELQRLSEEGSIVQKNKAKNELAQHLSSDPLPLRRAKITQEAAVKKADRAAQAAKEAT 301          
BLAST of mRNA_M-pyrifera_M_contig116179.3359.1 vs. uniprot
Match: L8GV16_ACACA (TolA protein n=3 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GV16_ACACA)

HSP 1 Score: 89.4 bits (220), Expect = 1.010e-18
Identity = 49/68 (72.06%), Postives = 59/68 (86.76%), Query Frame = 1
Query:   40 AQEDAYAARTAELERKSEEGGVVSRNRAKNELAQHLAEDPLPLRRAKINMEAAVRKADRATQAAADAT 243
            AQE+A+ ARTAEL R SEEG +V++NRAKNELAQHL+ DPLPLR+AKI  EAAV+KA+RA QAA +AT
Sbjct:  202 AQEEAFNARTAELTRLSEEGSIVAKNRAKNELAQHLSSDPLPLRKAKITQEAAVKKAERAAQAAREAT 269          
BLAST of mRNA_M-pyrifera_M_contig116179.3359.1 vs. uniprot
Match: A0A7S4JXE2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4JXE2_9EUKA)

HSP 1 Score: 89.7 bits (221), Expect = 1.270e-18
Identity = 55/76 (72.37%), Postives = 64/76 (84.21%), Query Frame = 1
Query:   16 EAALAELKAQEDAYAARTAELERKSEEG--GVVSRNRAKNELAQHLAEDPLPLRRAKINMEAAVRKADRATQAAAD 237
            EAALAE+K QEDAY  +TA L  KSE+   GVV+RNR KNELAQHLAEDPLPLR+AKI  EAAVRKA++AT+AAA+
Sbjct:  280 EAALAEVKKQEDAYNQKTATLTAKSEDESLGVVTRNRTKNELAQHLAEDPLPLRQAKITAEAAVRKAEKATKAAAE 355          
BLAST of mRNA_M-pyrifera_M_contig116179.3359.1 vs. uniprot
Match: L8H398_ACACA (TolAlike protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H398_ACACA)

HSP 1 Score: 87.4 bits (215), Expect = 3.080e-18
Identity = 48/73 (65.75%), Postives = 64/73 (87.67%), Query Frame = 1
Query:    1 AQSELEAALAELKAQEDAYAARTAELERKSEEGGVVSRNRAKNELAQHLAEDPLPLRRAKINMEAAVRKADRA 219
            AQ E++AALA++ AQE A  +RTAEL+RKS EGG+V +N+AK ELAQHLAEDPLPLR+AKI +EAA+++A++A
Sbjct:  167 AQEEVDAALADVNAQESARDSRTAELQRKSTEGGIVQQNKAKAELAQHLAEDPLPLRKAKITLEAALKRAEKA 239          
BLAST of mRNA_M-pyrifera_M_contig116179.3359.1 vs. uniprot
Match: L8H1H5_ACACA (F_actin_bund_C domain-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H1H5_ACACA)

HSP 1 Score: 87.8 bits (216), Expect = 3.090e-18
Identity = 48/65 (73.85%), Postives = 56/65 (86.15%), Query Frame = 1
Query:   37 KAQEDAYAARTAELERKSEEGGVVSRNRAKNELAQHLAEDPLPLRRAKINMEAAVRKADRATQAA 231
            KAQEDAY  +T +L+++SEEGGVV RN+AKNELAQHL EDPLPLR+AKI  EAAV+KADRA  AA
Sbjct:  191 KAQEDAYNHKTEDLKKRSEEGGVVQRNKAKNELAQHLGEDPLPLRKAKITQEAAVKKADRAAVAA 255          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116179.3359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4HNK8_9EUKA4.760e-2377.78Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A7S4JXR2_9EUKA1.740e-2273.17Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
A0A7S4JXG1_9EUKA3.790e-2173.68Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
A0A6U1WWW6_9EUKA6.380e-2171.25Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
L8GVG0_ACACA8.750e-2171.43TolAlike protein n=1 Tax=Acanthamoeba castellanii ... [more]
L8GWT1_ACACA6.350e-2073.91TolA, putative n=1 Tax=Acanthamoeba castellanii st... [more]
L8GV16_ACACA1.010e-1872.06TolA protein n=3 Tax=Acanthamoeba castellanii str.... [more]
A0A7S4JXE2_9EUKA1.270e-1872.37Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
L8H398_ACACA3.080e-1865.75TolAlike protein n=1 Tax=Acanthamoeba castellanii ... [more]
L8H1H5_ACACA3.090e-1873.85F_actin_bund_C domain-containing protein n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116179contigM-pyrifera_M_contig116179:206..562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue1.7e-07
Seed eggNOG ortholog46681.XP_001733992.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2C4AB@1,2S2VG@2759,3XC0R@554915
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons1
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815678.733988-CDS-M-pyrifera_M_contig116179:205..5621622815678.733988-CDS-M-pyrifera_M_contig116179:205..562Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116179 206..562 -
1692277517.9808028-CDS-M-pyrifera_M_contig116179:205..5621692277517.9808028-CDS-M-pyrifera_M_contig116179:205..562Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116179 206..562 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116179.3359.1prot_M-pyrifera_M_contig116179.3359.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116179 206..562 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116179.3359.1

>prot_M-pyrifera_M_contig116179.3359.1 ID=prot_M-pyrifera_M_contig116179.3359.1|Name=mRNA_M-pyrifera_M_contig116179.3359.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
AQSELEAALAELKAQEDAYAARTAELERKSEEGGVVSRNRAKNELAQHLA
EDPLPLRRAKINMEAAVRKADRATQAAADATGKANAAASAASEARANAEG
KAAEATAAREASEEAARQA
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mRNA from alignment at M-pyrifera_M_contig116179:206..562-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116179.3359.1 ID=mRNA_M-pyrifera_M_contig116179.3359.1|Name=mRNA_M-pyrifera_M_contig116179.3359.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig116179:206..562- (Macrocystis pyrifera P11B4 male)
GCCCAGTCCGAGCTCGAGGCCGCCCTGGCCGAGCTCAAGGCCCAGGAGGA CGCCTACGCCGCCAGGACCGCTGAGCTTGAGCGCAAGTCTGAGGAGGGCG GCGTTGTGAGCCGCAACCGCGCCAAGAACGAGCTGGCCCAGCACCTTGCC GAGGACCCCCTGCCCCTGAGGCGCGCCAAGATCAACATGGAGGCCGCCGT CCGCAAGGCCGACAGGGCCACTCAGGCCGCTGCTGATGCTACTGGCAAGG CCAACGCCGCTGCGTCTGCTGCATCTGAGGCTCGCGCCAACGCTGAGGGC AAGGCTGCTGAGGCCACTGCCGCCCGCGAGGCTTCTGAGGAGGCTGCCCG CCAGGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116179:206..562-

>mRNA_M-pyrifera_M_contig116179.3359.1 ID=mRNA_M-pyrifera_M_contig116179.3359.1|Name=mRNA_M-pyrifera_M_contig116179.3359.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig116179:206..562- (Macrocystis pyrifera P11B4 male)
GCCCAGTCCGAGCTCGAGGCCGCCCTGGCCGAGCTCAAGGCCCAGGAGGA
CGCCTACGCCGCCAGGACCGCTGAGCTTGAGCGCAAGTCTGAGGAGGGCG
GCGTTGTGAGCCGCAACCGCGCCAAGAACGAGCTGGCCCAGCACCTTGCC
GAGGACCCCCTGCCCCTGAGGCGCGCCAAGATCAACATGGAGGCCGCCGT
CCGCAAGGCCGACAGGGCCACTCAGGCCGCTGCTGATGCTACTGGCAAGG
CCAACGCCGCTGCGTCTGCTGCATCTGAGGCTCGCGCCAACGCTGAGGGC
AAGGCTGCTGAGGCCACTGCCGCCCGCGAGGCTTCTGAGGAGGCTGCCCG
CCAGGCTGCCCAGTCCGAGCTCGAGGCCGCCCTGGCCGAGCTCAAGGCCC
AGGAGGACGCCTACGCCGCCAGGACCGCTGAGCTTGAGCGCAAGTCTGAG
GAGGGCGGCGTTGTGAGCCGCAACCGCGCCAAGAACGAGCTGGCCCAGCA
CCTTGCCGAGGACCCCCTGCCCCTGAGGCGCGCCAAGATCAACATGGAGG
CCGCCGTCCGCAAGGCCGACAGGGCCACTCAGGCCGCTGCTGATGCTACT
GGCAAGGCCAACGCCGCTGCGTCTGCTGCATCTGAGGCTCGCGCCAACGC
TGAGGGCAAGGCTGCTGAGGCCACTGCCGCCCGCGAGGCTTCTGAGGAGG
CTGCCCGCCAGGCT
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