mRNA_M-pyrifera_M_contig116174.3356.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116174.3356.1
Unique NamemRNA_M-pyrifera_M_contig116174.3356.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116174.3356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116174contigM-pyrifera_M_contig116174:76..558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size483
Cds size465
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815678.5853527-CDS-M-pyrifera_M_contig116174:75..5401622815678.5853527-CDS-M-pyrifera_M_contig116174:75..540Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116174 76..540 -
1692277517.930949-CDS-M-pyrifera_M_contig116174:75..5401692277517.930949-CDS-M-pyrifera_M_contig116174:75..540Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116174 76..540 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815678.5965676-UTR-M-pyrifera_M_contig116174:540..5581622815678.5965676-UTR-M-pyrifera_M_contig116174:540..558Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116174 541..558 -
1692277517.9400012-UTR-M-pyrifera_M_contig116174:540..5581692277517.9400012-UTR-M-pyrifera_M_contig116174:540..558Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116174 541..558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116174.3356.1prot_M-pyrifera_M_contig116174.3356.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116174 76..540 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116174.3356.1

>prot_M-pyrifera_M_contig116174.3356.1 ID=prot_M-pyrifera_M_contig116174.3356.1|Name=mRNA_M-pyrifera_M_contig116174.3356.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp
MMATPLNIRLFVEVAQEYCGEALPSSMWALFKQSVKGVMRRELSAQKEVF
TELSKHINKKNLLAVLLSFHREVAYRLERGEAVTSAAMVDLLECLASEFV
KEADAGDVGHRLVDGSTERIMLLHLAVATKEAFFPIRSIQEFLAAWYVVE
RAEEA
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mRNA from alignment at M-pyrifera_M_contig116174:76..558-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116174.3356.1 ID=mRNA_M-pyrifera_M_contig116174.3356.1|Name=mRNA_M-pyrifera_M_contig116174.3356.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=483bp|location=Sequence derived from alignment at M-pyrifera_M_contig116174:76..558- (Macrocystis pyrifera P11B4 male)
GATGGTCACCTCTCAAAGATGATGGCGACACCGCTGAACATTCGGCTCTT
CGTGGAGGTGGCGCAGGAGTACTGTGGCGAGGCCCTGCCCAGCAGCATGT
GGGCCCTCTTCAAGCAGAGCGTCAAGGGCGTCATGCGCCGAGAACTGTCT
GCCCAGAAGGAGGTCTTCACGGAGCTGTCCAAGCACATCAACAAGAAAAA
CCTTTTGGCGGTGCTGCTGTCCTTCCACCGCGAGGTTGCCTACCGCCTCG
AGCGCGGCGAGGCAGTGACCTCGGCCGCGATGGTGGACCTCCTCGAGTGC
CTTGCCTCGGAGTTCGTCAAAGAGGCAGACGCTGGGGACGTTGGCCACCG
CCTCGTGGACGGCTCCACGGAGAGGATCATGCTGCTGCACCTGGCCGTCG
CCACGAAGGAGGCCTTCTTCCCCATCCGCTCCATCCAAGAGTTCCTGGCG
GCGTGGTACGTCGTCGAGCGCGCAGAGGAGGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116174:76..558-

>mRNA_M-pyrifera_M_contig116174.3356.1 ID=mRNA_M-pyrifera_M_contig116174.3356.1|Name=mRNA_M-pyrifera_M_contig116174.3356.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig116174:76..558- (Macrocystis pyrifera P11B4 male)
ATGATGGCGACACCGCTGAACATTCGGCTCTTCGTGGAGGTGGCGCAGGA
GTACTGTGGCGAGGCCCTGCCCAGCAGCATGTGGGCCCTCTTCAAGCAGA
GCGTCAAGGGCGTCATGCGCCGAGAACTGTCTGCCCAGAAGGAGGTCTTC
ACGGAGCTGTCCAAGCACATCAACAAGAAAAACCTTTTGGCGGTGCTGCT
GTCCTTCCACCGCGAGGTTGCCTACCGCCTCGAGCGCGGCGAGGCAGTGA
CCTCGGCCGCGATGGTGGACCTCCTCGAGTGCCTTGCCTCGGAGTTCGTC
AAAGAGGCAGACGCTGGGGACGTTGGCCACCGCCTCGTGGACGGCTCCAC
GGAGAGGATCATGCTGCTGCACCTGGCCGTCGCCACGAAGGAGGCCTTCT
TCCCCATCCGCTCCATCCAAGAGTTCCTGGCGGCGTGGTACGTCGTCGAG
CGCGCAGAGGAGGCGATGATGGCGACACCGCTGAACATTCGGCTCTTCGT
GGAGGTGGCGCAGGAGTACTGTGGCGAGGCCCTGCCCAGCAGCATGTGGG
CCCTCTTCAAGCAGAGCGTCAAGGGCGTCATGCGCCGAGAACTGTCTGCC
CAGAAGGAGGTCTTCACGGAGCTGTCCAAGCACATCAACAAGAAAAACCT
TTTGGCGGTGCTGCTGTCCTTCCACCGCGAGGTTGCCTACCGCCTCGAGC
GCGGCGAGGCAGTGACCTCGGCCGCGATGGTGGACCTCCTCGAGTGCCTT
GCCTCGGAGTTCGTCAAAGAGGCAGACGCTGGGGACGTTGGCCACCGCCT
CGTGGACGGCTCCACGGAGAGGATCATGCTGCTGCACCTGGCCGTCGCCA
CGAAGGAGGCCTTCTTCCCCATCCGCTCCATCCAAGAGTTCCTGGCGGCG
TGGTACGTCGTCGAGCGCGCAGAGGAGGCG
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