mRNA_M-pyrifera_M_contig116171.3354.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116171.3354.1
Unique NamemRNA_M-pyrifera_M_contig116171.3354.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116171.3354.1 vs. uniprot
Match: A0A7S4MMP2_9EUKA (Palmitoyltransferase (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MMP2_9EUKA)

HSP 1 Score: 85.9 bits (211), Expect = 1.070e-18
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query:    4 RPLRSKHCRYCNKCVSRFDHHCPWFDNCVGSPPNQIGSHHNFIMFLTVSVTVHTVLGTAM 183
            +P+RSKHC  CN+C  RFDHHCPW DNC+G+P NQ GSH+ F+ FL++S  +H ++ T M
Sbjct:   85 KPIRSKHCIICNRCCLRFDHHCPWVDNCLGTPANQHGSHYYFVCFLSISNFMHFIMETFM 144          
BLAST of mRNA_M-pyrifera_M_contig116171.3354.1 vs. uniprot
Match: A0A7S4IE41_9EUKA (Palmitoyltransferase (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IE41_9EUKA)

HSP 1 Score: 84.7 bits (208), Expect = 9.980e-18
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    1 KRPLRSKHCRYCNKCVSRFDHHCPWFDNCVGSPPNQIGSHHNFIMFLTVSVTVH 162
            ++PLR KHCR+CNKC   FDHHCPW DNCVG+P    GSH+ F+MFL VS  +H
Sbjct:  187 RKPLRCKHCRFCNKCCMTFDHHCPWVDNCVGTPVGGRGSHYYFVMFLVVSNIMH 240          
BLAST of mRNA_M-pyrifera_M_contig116171.3354.1 vs. uniprot
Match: A0A075AVJ9_ROZAC (Palmitoyltransferase (Fragment) n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075AVJ9_ROZAC)

HSP 1 Score: 70.9 bits (172), Expect = 8.700e-14
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 1
Query:    4 RPLRSKHCRYCNKCVSRFDHHCPWFDNCVGSPPNQIGSHHNFIM 135
            RPLRSKHCRYCNKCV+RFDHHCPW  NCVG       +H +F M
Sbjct:    1 RPLRSKHCRYCNKCVARFDHHCPWVFNCVGE-----NNHTDFFM 39          
BLAST of mRNA_M-pyrifera_M_contig116171.3354.1 vs. uniprot
Match: A0A6P8IJD9_ACTTE (Palmitoyltransferase n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IJD9_ACTTE)

HSP 1 Score: 73.6 bits (179), Expect = 1.400e-13
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    1 KRPLRSKHCRYCNKCVSRFDHHCPWFDNCVGSPPNQIGSHHNFI---MFLTVSVTVHT 165
            ++P+RSKHC  CN+CV+RFDHHCPW +NC+GS     G+HH FI    FL V + V+T
Sbjct:  351 RKPIRSKHCSVCNRCVARFDHHCPWVENCIGS-----GNHHYFIGYLFFLFVMINVYT 403          
BLAST of mRNA_M-pyrifera_M_contig116171.3354.1 vs. uniprot
Match: A0A6G1SP07_9ACAR (Palmitoyltransferase n=1 Tax=Aceria tosichella TaxID=561515 RepID=A0A6G1SP07_9ACAR)

HSP 1 Score: 72.4 bits (176), Expect = 3.590e-13
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    1 KRPLRSKHCRYCNKCVSRFDHHCPWFDNCVGSPPNQIGSHHNFIMFLTVSVTVH 162
            ++PLRSKHC +CNKCV+RFDHHCPW  NC+GS      +H +FI FL  SVT++
Sbjct:  414 RKPLRSKHCSHCNKCVARFDHHCPWVGNCIGSK-----NHRHFIWFL-FSVTIN 461          
BLAST of mRNA_M-pyrifera_M_contig116171.3354.1 vs. uniprot
Match: A0A1X2I7R1_9FUNG (Palmitoyltransferase n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2I7R1_9FUNG)

HSP 1 Score: 72.0 bits (175), Expect = 4.870e-13
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    1 KRPLRSKHCRYCNKCVSRFDHHCPWFDNCVGSPPNQIGSHHNFIMFLTVSVT 156
            K+PLRSKHC+ CN+CV+RFDHHCPW  NC+G     + +H +FI+FL   VT
Sbjct:  278 KKPLRSKHCKICNRCVARFDHHCPWIYNCIG-----VKNHRSFIIFLVNMVT 324          
BLAST of mRNA_M-pyrifera_M_contig116171.3354.1 vs. uniprot
Match: A0A162NKR4_PHYB8 (Palmitoyltransferase (Fragment) n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162NKR4_PHYB8)

HSP 1 Score: 71.6 bits (174), Expect = 6.650e-13
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    1 KRPLRSKHCRYCNKCVSRFDHHCPWFDNCVGSPPNQIGSHHNFIMFLTVSVT 156
            K+PLRSKHC+ CN+CV+RFDHHCPW  NC+G     + +H +F++FL   VT
Sbjct:  290 KKPLRSKHCKICNRCVARFDHHCPWISNCIG-----VHNHRSFMIFLLNMVT 336          
BLAST of mRNA_M-pyrifera_M_contig116171.3354.1 vs. uniprot
Match: A0A8H3DRI6_9AGAM (Palmitoyltransferase n=2 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3DRI6_9AGAM)

HSP 1 Score: 71.6 bits (174), Expect = 6.740e-13
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    1 KRPLRSKHCRYCNKCVSRFDHHCPWFDNCVGSPPNQIGSHHNFIMFLTVSVT 156
            ++PLRSKHCR C+KCV+RFDHHCPW  NCVG     I +H  FI+F++  VT
Sbjct:  436 RKPLRSKHCRVCDKCVARFDHHCPWVWNCVG-----INNHRQFIIFVSTLVT 482          
BLAST of mRNA_M-pyrifera_M_contig116171.3354.1 vs. uniprot
Match: A0A5N5QDX7_9AGAM (Palmitoyltransferase n=1 Tax=Ceratobasidium theobromae TaxID=1582974 RepID=A0A5N5QDX7_9AGAM)

HSP 1 Score: 71.6 bits (174), Expect = 6.740e-13
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    1 KRPLRSKHCRYCNKCVSRFDHHCPWFDNCVGSPPNQIGSHHNFIMFLTVSVT 156
            ++PLRSKHCR C++CV+RFDHHCPW  NCVG     + +H  FI+F+T  VT
Sbjct:  435 RKPLRSKHCRVCDRCVARFDHHCPWVWNCVG-----VNNHRQFIIFVTTLVT 481          
BLAST of mRNA_M-pyrifera_M_contig116171.3354.1 vs. uniprot
Match: A0A0K6FMZ5_9AGAM (DHHC domain-containing protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A0K6FMZ5_9AGAM)

HSP 1 Score: 71.6 bits (174), Expect = 6.810e-13
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    1 KRPLRSKHCRYCNKCVSRFDHHCPWFDNCVGSPPNQIGSHHNFIMFLTVSVT 156
            ++PLRSKHCR C+KCV+RFDHHCPW  NCVG     I +H  FI+F++  VT
Sbjct:  760 RKPLRSKHCRVCDKCVARFDHHCPWVWNCVG-----INNHRQFIIFVSTLVT 806          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116171.3354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4MMP2_9EUKA1.070e-1856.67Palmitoyltransferase (Fragment) n=1 Tax=Vannella s... [more]
A0A7S4IE41_9EUKA9.980e-1862.96Palmitoyltransferase (Fragment) n=1 Tax=Vannella s... [more]
A0A075AVJ9_ROZAC8.700e-1468.18Palmitoyltransferase (Fragment) n=1 Tax=Rozella al... [more]
A0A6P8IJD9_ACTTE1.400e-1355.17Palmitoyltransferase n=1 Tax=Actinia tenebrosa Tax... [more]
A0A6G1SP07_9ACAR3.590e-1359.26Palmitoyltransferase n=1 Tax=Aceria tosichella Tax... [more]
A0A1X2I7R1_9FUNG4.870e-1357.69Palmitoyltransferase n=1 Tax=Absidia repens TaxID=... [more]
A0A162NKR4_PHYB86.650e-1355.77Palmitoyltransferase (Fragment) n=1 Tax=Phycomyces... [more]
A0A8H3DRI6_9AGAM6.740e-1359.62Palmitoyltransferase n=2 Tax=Rhizoctonia solani Ta... [more]
A0A5N5QDX7_9AGAM6.740e-1357.69Palmitoyltransferase n=1 Tax=Ceratobasidium theobr... [more]
A0A0K6FMZ5_9AGAM6.810e-1359.62DHHC domain-containing protein n=1 Tax=Rhizoctonia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116171contigM-pyrifera_M_contig116171:271..489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue7.5e-11
Seed eggNOG ortholog42099.EPrPV00000019896
KEGG koko:K20032
KEGG TC9.B.37.1,9.B.37.3
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.palmitoyltransferase. Source PGD
EggNOG OGs1MB5C@121069,COG5273@1,KOG0509@2759
EC2.3.1.225
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04131
Exons1
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815678.505431-CDS-M-pyrifera_M_contig116171:270..4891622815678.505431-CDS-M-pyrifera_M_contig116171:270..489Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116171 271..489 -
1692277517.8998241-CDS-M-pyrifera_M_contig116171:270..4891692277517.8998241-CDS-M-pyrifera_M_contig116171:270..489Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116171 271..489 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116171.3354.1prot_M-pyrifera_M_contig116171.3354.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116171 271..489 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116171.3354.1

>prot_M-pyrifera_M_contig116171.3354.1 ID=prot_M-pyrifera_M_contig116171.3354.1|Name=mRNA_M-pyrifera_M_contig116171.3354.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=73bp
KRPLRSKHCRYCNKCVSRFDHHCPWFDNCVGSPPNQIGSHHNFIMFLTVS
VTVHTVLGTAMTIGTASTPPLFP
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mRNA from alignment at M-pyrifera_M_contig116171:271..489-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116171.3354.1 ID=mRNA_M-pyrifera_M_contig116171.3354.1|Name=mRNA_M-pyrifera_M_contig116171.3354.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=219bp|location=Sequence derived from alignment at M-pyrifera_M_contig116171:271..489- (Macrocystis pyrifera P11B4 male)
AAGCGGCCACTGCGGTCGAAGCACTGCCGCTACTGCAACAAGTGTGTGTC TCGCTTTGACCACCACTGCCCGTGGTTCGATAACTGTGTGGGCTCTCCGC CCAACCAAATCGGAAGCCACCACAACTTCATCATGTTCCTCACAGTCTCA GTCACCGTTCACACCGTGCTAGGCACCGCTATGACCATTGGTACGGCCTC TACCCCTCCTCTCTTTCCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116171:271..489-

>mRNA_M-pyrifera_M_contig116171.3354.1 ID=mRNA_M-pyrifera_M_contig116171.3354.1|Name=mRNA_M-pyrifera_M_contig116171.3354.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig116171:271..489- (Macrocystis pyrifera P11B4 male)
AAGCGGCCACTGCGGTCGAAGCACTGCCGCTACTGCAACAAGTGTGTGTC
TCGCTTTGACCACCACTGCCCGTGGTTCGATAACTGTGTGGGCTCTCCGC
CCAACCAAATCGGAAGCCACCACAACTTCATCATGTTCCTCACAGTCTCA
GTCACCGTTCACACCGTGCTAGGCACCGCTATGACCATTGGTACGGCCTC
TACCCCTCCTCTCTTTCCAAAGCGGCCACTGCGGTCGAAGCACTGCCGCT
ACTGCAACAAGTGTGTGTCTCGCTTTGACCACCACTGCCCGTGGTTCGAT
AACTGTGTGGGCTCTCCGCCCAACCAAATCGGAAGCCACCACAACTTCAT
CATGTTCCTCACAGTCTCAGTCACCGTTCACACCGTGCTAGGCACCGCTA
TGACCATTGGTACGGCCTCTACCCCTCCTCTCTTTCCA
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