mRNA_M-pyrifera_M_contig116077.3343.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116077.3343.1
Unique NamemRNA_M-pyrifera_M_contig116077.3343.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116077.3343.1 vs. uniprot
Match: A0A388PTV7_9PROT (Uncharacterized protein n=1 Tax=Methylophilaceae bacterium TaxID=2030816 RepID=A0A388PTV7_9PROT)

HSP 1 Score: 199 bits (505), Expect = 1.410e-63
Identity = 99/124 (79.84%), Postives = 107/124 (86.29%), Query Frame = 1
Query:    1 ISLLSPEYLLSVERWPFHTEPPDHYDLLSYLLDLSVSQSSTLVPLH*PHDFRPCLGYLRAPPLLFGRRPPQSNYPPHTVPDPDYGPRLEPQTCQGGISRLAPR*LASPLQSLPPILHKQAQSPV 372
            ISLLSPEYLLSVERWPFHTEPPDHYDLLS+LLDLSVSQSS L+PLH  +DFRP LGYLR PPLLFGRRPPQSN PP+TVP+P  G RLEPQ  QGGISRLAP  LA+ LQ LPPILH+  QSP+
Sbjct:   19 ISLLSPEYLLSVERWPFHTEPPDHYDLLSHLLDLSVSQSSNLMPLHYQYDFRPYLGYLRTPPLLFGRRPPQSNCPPYTVPNPVSGSRLEPQQHQGGISRLAPHDLATTLQCLPPILHRSCQSPM 142          
BLAST of mRNA_M-pyrifera_M_contig116077.3343.1 vs. uniprot
Match: A0A8H2LVE7_BURPE (Cell wall-associated hydrolase n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A8H2LVE7_BURPE)

HSP 1 Score: 197 bits (500), Expect = 1.540e-61
Identity = 99/124 (79.84%), Postives = 104/124 (83.87%), Query Frame = 1
Query:    1 ISLLSPEYLLSVERWPFHTEPPDHYDLLSYLLDLSVSQSSTLVPLH*PHDFRPCLGYLRAPPLLFGRRPPQSNYPPHTVPDPDYGPRLEPQTCQGGISRLAPR*LASPLQSLPPILHKQAQSPV 372
            ISLLSPEYLLSVERWPFHTEPPDHYDLLS+LLDLSVSQ STL+PLH  HDFRP L YLR PPL FGRRPPQSN  P TVPDPD+GPRLEPQT QGGISR AP  LA    SLPPILH+  QSP+
Sbjct:   99 ISLLSPEYLLSVERWPFHTEPPDHYDLLSHLLDLSVSQLSTLMPLHYQHDFRPYLAYLRTPPLRFGRRPPQSNCLPCTVPDPDHGPRLEPQTNQGGISRTAPPKLAFRFHSLPPILHRSVQSPM 222          
BLAST of mRNA_M-pyrifera_M_contig116077.3343.1 vs. uniprot
Match: L9U5D6_9GAMM (Uncharacterized protein n=1 Tax=Halomonas titanicae BH1 TaxID=1204738 RepID=L9U5D6_9GAMM)

HSP 1 Score: 188 bits (478), Expect = 3.460e-59
Identity = 93/123 (75.61%), Postives = 96/123 (78.05%), Query Frame = 2
Query:    2 SACYPRSTFYPLSDGPSIQNHRITMTYFRTCSTCPSRSQAPLCHYTNRMISDHA*GTFVLLRYSLGGDRPSQTTHHTRSLTRITGLG*NLKLARVVFQGWLHGNWRHRFKASHLSYTSKLKVQ 370
            SACYPRSTFYPLSDGPSIQNHRIT T FRTCSTC SRSQAPLC  T   +SD A GTFVLLRYSLGGDRPSQTTHHT S  RIT L  N   AR+VFQGWL  NWR  FKAS LSYT  + VQ
Sbjct:   14 SACYPRSTFYPLSDGPSIQNHRITRTCFRTCSTCLSRSQAPLCSCTQCTMSDRAEGTFVLLRYSLGGDRPSQTTHHTLSSIRITDLSENANDARLVFQGWLPPNWRPEFKASQLSYTGNISVQ 136          
BLAST of mRNA_M-pyrifera_M_contig116077.3343.1 vs. uniprot
Match: I3D5P0_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Nitrosopumilus salaria BD31 TaxID=859350 RepID=I3D5P0_9ARCH)

HSP 1 Score: 183 bits (464), Expect = 8.090e-57
Identity = 88/102 (86.27%), Postives = 92/102 (90.20%), Query Frame = 1
Query:    1 ISLLSPEYLLSVERWPFHTEPPDHYDLLSYLLDLSVSQSSTLVPLH*PHDFRPCLGYLRAPPLLFGRRPPQSNYPPHTVPDPDYGPRLEPQTCQGGISRLAP 306
            ISLLSPEYLLSVERWPFHTEPPDHYDLLS+LLDLSVSQSS L+PLH  +DFRP LGYLR PPLLFGRRPPQSN PP+TVPDPDYGPRLEPQ  QGGISR  P
Sbjct:   78 ISLLSPEYLLSVERWPFHTEPPDHYDLLSHLLDLSVSQSSNLMPLHYQYDFRPYLGYLRTPPLLFGRRPPQSNCPPYTVPDPDYGPRLEPQQHQGGISRSTP 179          
BLAST of mRNA_M-pyrifera_M_contig116077.3343.1 vs. uniprot
Match: A0A6B2E5S5_9DIPT (Putative cell wall-associated hydrolase (Fragment) n=1 Tax=Phlebotomus kandelakii TaxID=1109342 RepID=A0A6B2E5S5_9DIPT)

HSP 1 Score: 172 bits (435), Expect = 1.830e-52
Identity = 86/102 (84.31%), Postives = 90/102 (88.24%), Query Frame = 1
Query:    1 ISLLSPEYLLSVERWPFHTEPPDHYDLLSYLLDLSVSQSSTLVPLH*PHDFRPCLGYLRAPPLLFGRRPPQSNYPPHTVPDPDYGPRLEPQTCQGGISRLAP 306
            ISLLSPEYLLSVERWPFHTEPPDHY LLS+LLDLSVSQSSTL+PLH  +D RP L YLRAPPLLF RRPPQSN PP TVPDPD G RLEPQT QGGISR+AP
Sbjct:   74 ISLLSPEYLLSVERWPFHTEPPDHYVLLSHLLDLSVSQSSTLMPLHYQYDVRPYLAYLRAPPLLFRRRPPQSNCPPCTVPDPDNGSRLEPQTDQGGISRMAP 175          
BLAST of mRNA_M-pyrifera_M_contig116077.3343.1 vs. uniprot
Match: A0A510LIN6_NEIGO (Cell wall-associated hydrolase n=3 Tax=Neisseria TaxID=482 RepID=A0A510LIN6_NEIGO)

HSP 1 Score: 171 bits (432), Expect = 1.840e-51
Identity = 91/118 (77.12%), Postives = 94/118 (79.66%), Query Frame = 1
Query:    1 ISLLSPEYLLSVERWPFHTEPPDHYDLLSYLLDLSVSQSSTLVPLH*PHDFRPCLGYLRAPPLLFGRRPPQSNYPPHTVPDPDYGPRLEPQTCQGGISRLAPR*LASPLQSLPPILHK 354
            ISLLSPEYLLSVERWPFHTEPPDHY LLS+L DLSVSQ S L+PLH   DFRP LG LR PPL FGRRPPQSN  P TVPDPD G  LEPQ  QGGISR  P+ LAS L SLPPILHK
Sbjct:   99 ISLLSPEYLLSVERWPFHTEPPDHYVLLSHLPDLSVSQLSYLLPLHYQSDFRPDLGNLRTPPLRFGRRPPQSNCLPCTVPDPDDGSGLEPQRHQGGISRTTPQRLASLLPSLPPILHK 216          
BLAST of mRNA_M-pyrifera_M_contig116077.3343.1 vs. uniprot
Match: A0A0W0XYZ0_9GAMM (Uncharacterized protein n=1 Tax=Legionella quinlivanii TaxID=45073 RepID=A0A0W0XYZ0_9GAMM)

HSP 1 Score: 162 bits (410), Expect = 1.320e-49
Identity = 82/105 (78.10%), Postives = 90/105 (85.71%), Query Frame = -3
Query:    5 TPVTVEPTLKYHPGKFEVLT*ARNPGQGPCVVGSLTGAVSSQRVTEEHEGTLSMVGNHAVSVMAQGCLTARRTGRAGTKVGHSDPVVLYGRAIAQRIKGTPGITG 319
            TPV +EPTLKYHP   EVLT + +PG+G C+VGSLTGAVSSQRVTEEH+GTL  VG+   SV A+GCLTARRT RAGTKVG SDPVVLYGRAIAQRIKGTPGITG
Sbjct:    3 TPVRMEPTLKYHPVIIEVLTWSSHPGRGQCMVGSLTGAVSSQRVTEEHKGTLGTVGHRTKSVKAKGCLTARRTCRAGTKVGLSDPVVLYGRAIAQRIKGTPGITG 107          
BLAST of mRNA_M-pyrifera_M_contig116077.3343.1 vs. uniprot
Match: A0A0H5PZI5_9ZZZZ (Uncharacterized protein n=1 Tax=uncultured prokaryote TaxID=198431 RepID=A0A0H5PZI5_9ZZZZ)

HSP 1 Score: 160 bits (404), Expect = 4.910e-48
Identity = 85/122 (69.67%), Postives = 92/122 (75.41%), Query Frame = 1
Query:    1 ISLLSPEYLLSVERWPFHTEPPDHYDLLSYLLDLSVSQSSTLVPLH*PHDFRPCLGYLRAPPLLFGRRPPQSNYPPHTVPDPDYGPRLEPQTCQGGISRLAPR*LASPLQSLPPILHKQAQS 366
            ISLLSPEYLLSVERWPFH+ PPDHYDLLS+LL+L +SQSSTL+PLH  HDFRP L YLR PPL F RRPPQSN  P TVP+  +   LEPQT QGGISR  P  LA     LPPILHK   S
Sbjct:   19 ISLLSPEYLLSVERWPFHSVPPDHYDLLSHLLELWLSQSSTLLPLHYQHDFRPYLAYLRTPPLPFRRRPPQSNCLPCTVPNSVHLSWLEPQTNQGGISRSTPEELALLFLCLPPILHKSVHS 140          
BLAST of mRNA_M-pyrifera_M_contig116077.3343.1 vs. uniprot
Match: A0A6A5KV19_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5KV19_LUPAL)

HSP 1 Score: 155 bits (391), Expect = 2.300e-43
Identity = 77/123 (62.60%), Postives = 84/123 (68.29%), Query Frame = 2
Query:    2 SACYPRSTFYPLSDGPSIQNHRITMTYFRTCSTCPSRSQAPLCHYTNRMISDHA*GTFVLLRYSLGGDRPSQTTHHTRSLTRITGLG*NLKLARVVFQGWLHGNWRHRFKASHLSYTSKLKVQ 370
            SACYPR TFYPLSDGPS ++HRITMT FR CSTC SRSQA LCH T R ISD +  T   LRYS GGDRPSQTTHHT S  R+T             +GWLH NWR  FKA HLSYT + + Q
Sbjct:    7 SACYPRRTFYPLSDGPSTRDHRITMTDFRLCSTCQSRSQAGLCHCTRRAISDRSEPTIARLRYSFGGDRPSQTTHHTLSRIRMTD------------RGWLHSNWRPSFKAYHLSYTCRHECQ 117          
BLAST of mRNA_M-pyrifera_M_contig116077.3343.1 vs. uniprot
Match: A0A0N8SDS7_PSESH (Uncharacterized protein n=4 Tax=Pseudomonas syringae group TaxID=136849 RepID=A0A0N8SDS7_PSESH)

HSP 1 Score: 145 bits (366), Expect = 5.370e-43
Identity = 71/86 (82.56%), Postives = 72/86 (83.72%), Query Frame = 2
Query:    2 SACYPRSTFYPLSDGPSIQNHRITMTYFRTCSTCPSRSQAPLCHYTNRMISDHA*GTFVLLRYSLGGDRPSQTTHHTRSLTRITGL 259
            SACYPRSTFYPLSDGPSIQNHRIT TYFRTCSTC SRSQA  C YT R ISD +  TFVLLRYSLGGDRPSQTTHHT S  RIT L
Sbjct:   14 SACYPRSTFYPLSDGPSIQNHRITKTYFRTCSTCLSRSQARFCLYTLRPISDRSERTFVLLRYSLGGDRPSQTTHHTLSSIRITDL 99          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116077.3343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A388PTV7_9PROT1.410e-6379.84Uncharacterized protein n=1 Tax=Methylophilaceae b... [more]
A0A8H2LVE7_BURPE1.540e-6179.84Cell wall-associated hydrolase n=3 Tax=Proteobacte... [more]
L9U5D6_9GAMM3.460e-5975.61Uncharacterized protein n=1 Tax=Halomonas titanica... [more]
I3D5P0_9ARCH8.090e-5786.27Uncharacterized protein n=1 Tax=Candidatus Nitroso... [more]
A0A6B2E5S5_9DIPT1.830e-5284.31Putative cell wall-associated hydrolase (Fragment)... [more]
A0A510LIN6_NEIGO1.840e-5177.12Cell wall-associated hydrolase n=3 Tax=Neisseria T... [more]
A0A0W0XYZ0_9GAMM1.320e-4978.10Uncharacterized protein n=1 Tax=Legionella quinliv... [more]
A0A0H5PZI5_9ZZZZ4.910e-4869.67Uncharacterized protein n=1 Tax=uncultured prokary... [more]
A0A6A5KV19_LUPAL2.300e-4362.60Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A0N8SDS7_PSESH5.370e-4382.56Uncharacterized protein n=4 Tax=Pseudomonas syring... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116077contigM-pyrifera_M_contig116077:1..372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score94.0
Seed ortholog evalue2e-17
Seed eggNOG ortholog758.BBIX01000006_gene245
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.by Glimmer3
EggNOG OGs1RGGF@1224,1S5B2@1236,1Y8GF@135625,2AU0F@1,31JKB@2
COG Functional cat.S
Best tax levelPasteurellales
Best eggNOG OGNA|NA|NA
Exons1
Model size372
Cds size141
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815677.7765486-CDS-M-pyrifera_M_contig116077:0..1411622815677.7765486-CDS-M-pyrifera_M_contig116077:0..141Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116077 1..141 +
1692277517.5159175-CDS-M-pyrifera_M_contig116077:0..1411692277517.5159175-CDS-M-pyrifera_M_contig116077:0..141Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116077 1..141 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815677.7906256-UTR-M-pyrifera_M_contig116077:141..3721622815677.7906256-UTR-M-pyrifera_M_contig116077:141..372Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116077 142..372 +
1692277517.5275745-UTR-M-pyrifera_M_contig116077:141..3721692277517.5275745-UTR-M-pyrifera_M_contig116077:141..372Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116077 142..372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116077.3343.1prot_M-pyrifera_M_contig116077.3343.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116077 1..141 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116077.3343.1

>prot_M-pyrifera_M_contig116077.3343.1 ID=prot_M-pyrifera_M_contig116077.3343.1|Name=mRNA_M-pyrifera_M_contig116077.3343.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=47bp
ISLLSPEYLLSVERWPFHTEPPDHYDLLSYLLDLSVSQSSTLVPLH*
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mRNA from alignment at M-pyrifera_M_contig116077:1..372+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116077.3343.1 ID=mRNA_M-pyrifera_M_contig116077.3343.1|Name=mRNA_M-pyrifera_M_contig116077.3343.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig116077:1..372+ (Macrocystis pyrifera P11B4 male)
ATCAGCCTGTTATCCCCGGAGTACCTTTTATCCGTTGAGCGATGGCCCTT CCATACAGAACCACCGGATCACTATGACCTACTTTCGTACCTGCTCGACC TGTCCGTCTCGCAGTCAAGCACCCTTGTGCCATTACACTAACCGCATGAT TTCCGACCATGCTTAGGGTACCTTCGTGCTCCTCCGTTACTCTTTGGGAG GAGACCGCCCCAGTCAAACTACCCACCACACACGGTCCCTGACCCGGATT ACGGGCCTAGGTTAGAACCTCAAACTTGCCAGGGTGGTATTTCAAGGTTG GCTCCACGGTAACTGGCGTCACCGCTTCAAAGCCTCCCACCTATCCTACA CAAGCAAGCTCAAAGTCCAGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116077:1..372+

>mRNA_M-pyrifera_M_contig116077.3343.1 ID=mRNA_M-pyrifera_M_contig116077.3343.1|Name=mRNA_M-pyrifera_M_contig116077.3343.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig116077:1..372+ (Macrocystis pyrifera P11B4 male)
ATCAGCCTGTTATCCCCGGAGTACCTTTTATCCGTTGAGCGATGGCCCTT
CCATACAGAACCACCGGATCACTATGACCTACTTTCGTACCTGCTCGACC
TGTCCGTCTCGCAGTCAAGCACCCTTGTGCCATTACACTAAATCAGCCTG
TTATCCCCGGAGTACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGA
ACCACCGGATCACTATGACCTACTTTCGTACCTGCTCGACCTGTCCGTCT
CGCAGTCAAGCACCCTTGTGCCATTACACTAA
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