mRNA_M-pyrifera_M_contig116060.3338.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116060.3338.1
Unique NamemRNA_M-pyrifera_M_contig116060.3338.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig116060.3338.1 vs. uniprot
Match: A0A2E7KH17_9PLAN (Uncharacterized protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KH17_9PLAN)

HSP 1 Score: 368 bits (944), Expect = 8.010e-126
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1 
Query:    1 IEHAREAYRQGRFVEAGVLAGQVCKDAKQAGHDEMAFQLGLFEVQSLLRAGKPLGALNRLLTMESWEAPRHESLYQMREETFNLLRLYNPDLTQLETRLAELESLARSALDGTVSDFRLYEFLFLEDQGKDEKALNATEQAWSERGPATMNHAHATASNSCLANLRLNRRSQAEEWIKIMKRDGETE 561
            IEHAREAYRQGRFVEAGVLAGQVCKDAKQAGHDEMAFQLGLFEVQSLLRAGKPLGALNRLLTMESWEAPRHESLYQMREETFNLLRLYNPDLTQLETRLAELESLARSALDGTVSDFRLYEFLFLEDQGKDEKALNATEQAWSERGPATMNHAHATASNSCLANLRLNRRSQAEEWIKIMKRDGETE
Sbjct:    9 IEHAREAYRQGRFVEAGVLAGQVCKDAKQAGHDEMAFQLGLFEVQSLLRAGKPLGALNRLLTMESWEAPRHESLYQMREETFNLLRLYNPDLTQLETRLAELESLARSALDGTVSDFRLYEFLFLEDQGKDEKALNATEQAWSERGPATMNHAHATASNSCLANLRLNRRSQAEEWIKIMKRDGETE 195
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BLAST of mRNA_M-pyrifera_M_contig116060.3338.1 vs. uniprot
Match: A0A350K8C4_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350K8C4_9PLAN)

HSP 1 Score: 294 bits (753), Expect = 7.670e-97
Identity = 145/187 (77.54%), Postives = 166/187 (88.77%), Query Frame = 1 
Query:    1 IEHAREAYRQGRFVEAGVLAGQVCKDAKQAGHDEMAFQLGLFEVQSLLRAGKPLGALNRLLTMESWEAPRHESLYQMREETFNLLRLYNPDLTQLETRLAELESLARSALDGTVSDFRLYEFLFLEDQGKDEKALNATEQAWSERGPATMNHAHATASNSCLANLRLNRRSQAEEWIKIMKRDGETE 561
            ++HA +AYRQGRF EAGVLAGQ+C DAKQ+GHD MAFQLGL EVQSLLRAGKPLGALNRLLTMESWEAP HES++ MR++TF+LLRLYNP +TQLE+RL ELESLA SALDG V+D R YE +FLEDQGK+EKALNA E AWSERG ATMNHAH+TA++ CL NLRLNRR QAEEW+KI++RDGE E
Sbjct:    9 VDHASDAYRQGRFAEAGVLAGQLCNDAKQSGHDGMAFQLGLLEVQSLLRAGKPLGALNRLLTMESWEAPYHESIFDMRKQTFDLLRLYNPVMTQLESRLGELESLASSALDGVVADVRFYESMFLEDQGKNEKALNAIELAWSERGVATMNHAHSTAASGCLVNLRLNRRPQAEEWVKIIERDGEIE 195
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BLAST of mRNA_M-pyrifera_M_contig116060.3338.1 vs. uniprot
Match: A6C4E2_9PLAN (Uncharacterized protein n=2 Tax=Gimesia maris TaxID=122 RepID=A6C4E2_9PLAN)

HSP 1 Score: 295 bits (754), Expect = 7.860e-97
Identity = 144/185 (77.84%), Postives = 166/185 (89.73%), Query Frame = 1 
Query:    1 IEHAREAYRQGRFVEAGVLAGQVCKDAKQAGHDEMAFQLGLFEVQSLLRAGKPLGALNRLLTMESWEAPRHESLYQMREETFNLLRLYNPDLTQLETRLAELESLARSALDGTVSDFRLYEFLFLEDQGKDEKALNATEQAWSERGPATMNHAHATASNSCLANLRLNRRSQAEEWIKIMKRDGE 555
            I+HA EAYRQGRFVEAGVLAGQ C DAK+AG DE+A++LGLFEVQ LLRAGKPLGALNRLLTM+SW+AP HE L+QM+++TF+LLR YNPD+TQLETRL ELE LA+SALDG V+DFRLYE+L+LEDQGKDEKALN+ E AWSERG  TMNHAH+TAS  CL NLRLNRR QAE+W+KIM+RDGE
Sbjct:    9 IDHAYEAYRQGRFVEAGVLAGQTCNDAKKAGKDELAYELGLFEVQCLLRAGKPLGALNRLLTMKSWKAPLHEYLFQMKKQTFDLLRSYNPDVTQLETRLGELERLAKSALDGVVADFRLYEYLYLEDQGKDEKALNSIELAWSERGAGTMNHAHSTASYGCLVNLRLNRRPQAEDWVKIMERDGE 193
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BLAST of mRNA_M-pyrifera_M_contig116060.3338.1 vs. uniprot
Match: A0A350K8C5_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350K8C5_9PLAN)

HSP 1 Score: 274 bits (701), Expect = 5.710e-89
Identity = 141/186 (75.81%), Postives = 158/186 (84.95%), Query Frame = 1 
Query:    4 EHAREAYRQGRFVEAGVLAGQVCKDAKQAGHDEMAFQLGLFEVQSLLRAGKPLGALNRLLTMESWEAPRHESLYQMREETFNLLRLYNPDLTQLETRLAELESLARSALDGTVSDFRLYEFLFLEDQGKDEKALNATEQAWSERGPATMNHAHATASNSCLANLRLNRRSQAEEWIKIMKRDGETE 561
            EHA EAYRQGRF EAG+L GQ+C DAKQAG+D++AFQLGL EV  L RAGKPL ALNRLL+ME+WEAP HESL+ MRE T +LLRLYNPD+TQLE RLAELESLA +A DG V+D R  EF FLE QGK EKALNA E AWSERG ATMNHAHATA+  CLANLRLNRR+QAE+WIKI++RDGETE
Sbjct:   10 EHAHEAYRQGRFEEAGMLLGQLCNDAKQAGNDKIAFQLGLSEVTCLKRAGKPLEALNRLLSMEAWEAPNHESLFSMREMTVDLLRLYNPDMTQLEARLAELESLAVNASDGVVADLRFCEFEFLEAQGKHEKALNAIELAWSERGDATMNHAHATAAAGCLANLRLNRRAQAEDWIKIIERDGETE 195
[Close]
BLAST of mRNA_M-pyrifera_M_contig116060.3338.1 vs. uniprot
Match: A6C4E4_9PLAN (Uncharacterized protein n=2 Tax=Gimesia maris TaxID=122 RepID=A6C4E4_9PLAN)

HSP 1 Score: 270 bits (690), Expect = 2.630e-87
Identity = 137/186 (73.66%), Postives = 157/186 (84.41%), Query Frame = 1 
Query:    4 EHAREAYRQGRFVEAGVLAGQVCKDAKQAGHDEMAFQLGLFEVQSLLRAGKPLGALNRLLTMESWEAPRHESLYQMREETFNLLRLYNPDLTQLETRLAELESLARSALDGTVSDFRLYEFLFLEDQGKDEKALNATEQAWSERGPATMNHAHATASNSCLANLRLNRRSQAEEWIKIMKRDGETE 561
            EHA EAY QGRFVEAG++ GQ+C DAKQAG++ +AFQ GL EV+ L RAGKPL ALNRLL+MESWE  RHESL+ MRE TF+LLRLYNPD+TQLETRL ELESLA +AL+G V+D R  E+ FLEDQGK+EK+LNA E AWSERG ATMNHAHATA+  CL NL LNRR QAE+WIKIM+RDGETE
Sbjct:   10 EHAHEAYGQGRFVEAGMMFGQLCNDAKQAGNEGIAFQFGLNEVKCLKRAGKPLEALNRLLSMESWEVSRHESLFSMREMTFDLLRLYNPDMTQLETRLGELESLAGNALEGVVADLRFCEYEFLEDQGKNEKSLNAIELAWSERGAATMNHAHATAAAGCLVNLSLNRRPQAEDWIKIMERDGETE 195
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116060.3338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2E7KH17_9PLAN8.010e-126100.00Uncharacterized protein n=3 Tax=Gimesia TaxID=1649... [more]
A0A350K8C4_9PLAN7.670e-9777.54Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A6C4E2_9PLAN7.860e-9777.84Uncharacterized protein n=2 Tax=Gimesia maris TaxI... [more]
A0A350K8C5_9PLAN5.710e-8975.81Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A6C4E4_9PLAN2.630e-8773.66Uncharacterized protein n=2 Tax=Gimesia maris TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116060contigM-pyrifera_M_contig116060:2..562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size561
Cds size561
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815677.5905645-CDS-M-pyrifera_M_contig116060:1..5621622815677.5905645-CDS-M-pyrifera_M_contig116060:1..562Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116060 2..562 +
1692277517.4456043-CDS-M-pyrifera_M_contig116060:1..5621692277517.4456043-CDS-M-pyrifera_M_contig116060:1..562Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116060 2..562 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116060.3338.1prot_M-pyrifera_M_contig116060.3338.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116060 2..562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116060.3338.1

>prot_M-pyrifera_M_contig116060.3338.1 ID=prot_M-pyrifera_M_contig116060.3338.1|Name=mRNA_M-pyrifera_M_contig116060.3338.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=187bp
IEHAREAYRQGRFVEAGVLAGQVCKDAKQAGHDEMAFQLGLFEVQSLLRA
GKPLGALNRLLTMESWEAPRHESLYQMREETFNLLRLYNPDLTQLETRLA
ELESLARSALDGTVSDFRLYEFLFLEDQGKDEKALNATEQAWSERGPATM
NHAHATASNSCLANLRLNRRSQAEEWIKIMKRDGETE
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mRNA from alignment at M-pyrifera_M_contig116060:2..562+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116060.3338.1 ID=mRNA_M-pyrifera_M_contig116060.3338.1|Name=mRNA_M-pyrifera_M_contig116060.3338.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=561bp|location=Sequence derived from alignment at M-pyrifera_M_contig116060:2..562+ (Macrocystis pyrifera P11B4 male)
ATCGAACATGCGCGAGAAGCTTACAGACAGGGACGCTTTGTGGAAGCGGG
AGTTCTGGCAGGTCAAGTTTGCAAGGATGCGAAGCAGGCCGGCCATGATG
AAATGGCATTCCAGTTGGGCCTGTTCGAGGTACAAAGCCTGCTGCGTGCG
GGTAAACCGCTGGGCGCATTGAATCGCCTGCTTACGATGGAGTCCTGGGA
GGCGCCGCGTCATGAGTCTTTGTACCAAATGCGAGAAGAGACTTTCAATC
TGCTGCGGCTTTACAATCCCGATCTGACGCAGTTAGAAACGCGGCTTGCA
GAACTGGAGAGTCTTGCCAGAAGTGCTCTTGATGGAACTGTTTCCGACTT
CCGGTTGTATGAATTTCTGTTTTTGGAAGATCAGGGTAAGGATGAGAAGG
CCCTCAATGCCACAGAGCAGGCCTGGTCGGAACGCGGCCCGGCAACCATG
AACCATGCGCACGCAACTGCTTCTAACAGCTGCCTGGCGAACCTGCGCCT
GAATCGACGTTCGCAGGCCGAGGAATGGATCAAAATCATGAAGCGTGATG
GCGAGACCGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116060:2..562+

>mRNA_M-pyrifera_M_contig116060.3338.1 ID=mRNA_M-pyrifera_M_contig116060.3338.1|Name=mRNA_M-pyrifera_M_contig116060.3338.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1122bp|location=Sequence derived from alignment at M-pyrifera_M_contig116060:2..562+ (Macrocystis pyrifera P11B4 male)
ATCGAACATGCGCGAGAAGCTTACAGACAGGGACGCTTTGTGGAAGCGGG
AGTTCTGGCAGGTCAAGTTTGCAAGGATGCGAAGCAGGCCGGCCATGATG
AAATGGCATTCCAGTTGGGCCTGTTCGAGGTACAAAGCCTGCTGCGTGCG
GGTAAACCGCTGGGCGCATTGAATCGCCTGCTTACGATGGAGTCCTGGGA
GGCGCCGCGTCATGAGTCTTTGTACCAAATGCGAGAAGAGACTTTCAATC
TGCTGCGGCTTTACAATCCCGATCTGACGCAGTTAGAAACGCGGCTTGCA
GAACTGGAGAGTCTTGCCAGAAGTGCTCTTGATGGAACTGTTTCCGACTT
CCGGTTGTATGAATTTCTGTTTTTGGAAGATCAGGGTAAGGATGAGAAGG
CCCTCAATGCCACAGAGCAGGCCTGGTCGGAACGCGGCCCGGCAACCATG
AACCATGCGCACGCAACTGCTTCTAACAGCTGCCTGGCGAACCTGCGCCT
GAATCGACGTTCGCAGGCCGAGGAATGGATCAAAATCATGAAGCGTGATG
GCGAGACCGAAATCGAACATGCGCGAGAAGCTTACAGACAGGGACGCTTT
GTGGAAGCGGGAGTTCTGGCAGGTCAAGTTTGCAAGGATGCGAAGCAGGC
CGGCCATGATGAAATGGCATTCCAGTTGGGCCTGTTCGAGGTACAAAGCC
TGCTGCGTGCGGGTAAACCGCTGGGCGCATTGAATCGCCTGCTTACGATG
GAGTCCTGGGAGGCGCCGCGTCATGAGTCTTTGTACCAAATGCGAGAAGA
GACTTTCAATCTGCTGCGGCTTTACAATCCCGATCTGACGCAGTTAGAAA
CGCGGCTTGCAGAACTGGAGAGTCTTGCCAGAAGTGCTCTTGATGGAACT
GTTTCCGACTTCCGGTTGTATGAATTTCTGTTTTTGGAAGATCAGGGTAA
GGATGAGAAGGCCCTCAATGCCACAGAGCAGGCCTGGTCGGAACGCGGCC
CGGCAACCATGAACCATGCGCACGCAACTGCTTCTAACAGCTGCCTGGCG
AACCTGCGCCTGAATCGACGTTCGCAGGCCGAGGAATGGATCAAAATCAT
GAAGCGTGATGGCGAGACCGAA
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