mRNA_M-pyrifera_M_contig116.3324.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig116.3324.1 vs. uniprot
Match: A0A6H5KSW5_9PHAE (RNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSW5_9PHAE) HSP 1 Score: 163 bits (412), Expect = 5.910e-44 Identity = 72/90 (80.00%), Postives = 83/90 (92.22%), Query Frame = 1
Query: 1 RAQALAIVVGNPNLLVGEDYWRDLLLFCRDNDAIRGCPCPALQAESREDKASLVEAVLQQSLLGGGGMDLMYPDDGGFYDQDDLQWRVML 270
RAQALA+VVGNPNLL GE+YW++LL+FC++NDAIRGC CPAL+ RED+ASLV+AVLQQSLLGGGGMDLMYP+ G FYDQDDLQWRVML
Sbjct: 852 RAQALAVVVGNPNLLAGEEYWKELLMFCKENDAIRGCACPALEVGGREDEASLVDAVLQQSLLGGGGMDLMYPEHGDFYDQDDLQWRVML 941
BLAST of mRNA_M-pyrifera_M_contig116.3324.1 vs. uniprot
Match: D7FRN2_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRN2_ECTSI) HSP 1 Score: 157 bits (397), Expect = 6.820e-42 Identity = 69/87 (79.31%), Postives = 80/87 (91.95%), Query Frame = 1
Query: 1 RAQALAIVVGNPNLLVGEDYWRDLLLFCRDNDAIRGCPCPALQAESREDKASLVEAVLQQSLLGGGGMDLMYPDDGGFYDQDDLQWR 261
RAQALA+VVGNPNLL GE+YW++LL+FC++NDAIRGC CPAL+ RED+ASLV+AVLQQSLLGGGGMDLMYP+ G FYDQDDLQWR
Sbjct: 1154 RAQALAVVVGNPNLLAGEEYWKELLMFCKENDAIRGCACPALEVGGREDEASLVDAVLQQSLLGGGGMDLMYPEHGDFYDQDDLQWR 1240
BLAST of mRNA_M-pyrifera_M_contig116.3324.1 vs. uniprot
Match: A0A7S3SUN1_EMIHU (RNA helicase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SUN1_EMIHU) HSP 1 Score: 76.3 bits (186), Expect = 1.720e-13 Identity = 44/103 (42.72%), Postives = 59/103 (57.28%), Query Frame = 1
Query: 1 RAQALAIVVGNPNLLVGEDYWRDLLLFCRDNDAIRGCPCPALQAESREDKAS------LVEAVLQQSLLGGGGMDLMYPD-------DGGFYDQDDLQWRVML 270
RA+AL +VVG+PN L+ + WR+LL + +ND+ RGCP P L E ED+AS L + V S+LG G M+P DG + + DD WRVML
Sbjct: 869 RARALLVVVGDPNALIDDPSWRELLRYAVENDSYRGCPHP-LMMEGTEDEASENTMAQLADHVAN-SVLGSGNAVAMFPTLAGEATYDGAYDESDDQPWRVML 969
BLAST of mRNA_M-pyrifera_M_contig116.3324.1 vs. uniprot
Match: A0A7S0LAB4_9EUKA (RNA helicase n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LAB4_9EUKA) HSP 1 Score: 73.6 bits (179), Expect = 1.400e-12 Identity = 40/97 (41.24%), Postives = 53/97 (54.64%), Query Frame = 1
Query: 1 RAQALAIVVGNPNLLVGEDYWRDLLLFCRDNDAIRGCPCPALQAESREDKASLVEAVLQQSLLGGGGMDLMYPDDGGFYD-------QDDLQWRVML 270
RA+AL +VVG+PN L + YWR+LL + ++DA RGC P L + E+ S+ A L Q LG G M+P F + DD WRVML
Sbjct: 451 RAKALLLVVGDPNALYDDQYWRELLQYAVEHDAYRGCAHPLLVEGAEEEDVSIRLAQLAQQTLGLGDACRMFPRFSSFLEGGTDYESYDDQPWRVML 547
BLAST of mRNA_M-pyrifera_M_contig116.3324.1 vs. uniprot
Match: A0A7S3VY91_9SPIT (RNA helicase (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3VY91_9SPIT) HSP 1 Score: 69.3 bits (168), Expect = 3.500e-12 Identity = 36/100 (36.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query: 1 RAQALAIVVGNPNLLVGEDYWRDLLLFCRDNDAIRGCPCPAL----QAESREDKASLVEAVLQQSLLGGGGMDLMYPD------DGGFYDQDDLQWRVML 270
RA+AL +VVG+PN LV + W +LL + +N A RGCP P L + + +D + + + +++LG G M+P +G + + DD WRVML
Sbjct: 59 RAKALLVVVGDPNALVDDPSWCELLRYAVENGAYRGCPHPLLIEGAEEDDYDDTLANIADQMAKTVLGAGNAMSMFPSLTDTLYEGHYNESDDQPWRVML 158
BLAST of mRNA_M-pyrifera_M_contig116.3324.1 vs. uniprot
Match: A0A7S4C5E9_CHRCT (RNA helicase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C5E9_CHRCT) HSP 1 Score: 68.9 bits (167), Expect = 1.170e-11 Identity = 41/102 (40.20%), Postives = 55/102 (53.92%), Query Frame = 1
Query: 1 RAQALAIVVGNPNLLVGEDYWRDLLLFCRDNDAIRGCPCPALQAESREDKASLVE--AVLQQSLLGGGGMDLMYPD---------DGGFYDQ-DDLQWRVML 270
RA+AL ++VG+PN LV + WR+LL + +NDA RGC P L + + A + A L + LG G + M+P DG YD DD WRVML
Sbjct: 105 RAKALLLIVGDPNALVEDAMWRELLRYAVENDAYRGCAHPLLPDGADDADAGVTARLAALARRALGAGDVAKMFPSFSSFLPQCADGDEYDGCDDQPWRVML 206
BLAST of mRNA_M-pyrifera_M_contig116.3324.1 vs. uniprot
Match: A0A7S0NN57_9EUKA (RNA helicase n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NN57_9EUKA) HSP 1 Score: 66.2 bits (160), Expect = 4.430e-10 Identity = 38/100 (38.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query: 1 RAQALAIVVGNPNLLVGEDYWRDLLLFCRDNDAIRGCPCPALQAESREDKASLVEAV-LQQSLLGGGGMDLMYPD---------DGGFYDQDDLQWRVML 270
RA+AL +VVG+PN L + YWR+LL + +++A RGC P L + +D S+ L Q LG G M+P D + DD WRVML
Sbjct: 280 RAKALLLVVGDPNALFDDQYWRELLKYAVEHNAYRGCAHPLLVEGADDDDHSVSRLTQLAQQTLGFGEASRMFPAFSSFLAGGADNDYEAYDDQPWRVML 379
BLAST of mRNA_M-pyrifera_M_contig116.3324.1 vs. uniprot
Match: R1BX97_EMIHU (RNA helicase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BX97_EMIHU) HSP 1 Score: 58.2 bits (139), Expect = 3.210e-7 Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 1
Query: 1 RAQALAIVVGNPNLLVGEDYWRDLLLFCRDNDAIRGCPCPALQAESREDKASL 159
RA+AL +VVG+PN L+ + WR+LL + +ND+ RGCP P L E ED+A L
Sbjct: 339 RARALLVVVGDPNALIDDPSWRELLRYAVENDSYRGCPHP-LMMEGTEDEARL 390
BLAST of mRNA_M-pyrifera_M_contig116.3324.1 vs. uniprot
Match: A0A1W4W200_DROFC (RNA helicase n=1 Tax=Drosophila ficusphila TaxID=30025 RepID=A0A1W4W200_DROFC) HSP 1 Score: 55.8 bits (133), Expect = 2.310e-6 Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 1
Query: 1 RAQALAIVVGNPNLLVGEDYWRDLLLFCRDNDAIRGCPCP-ALQAESREDKASL 159
RA+A+ IV GNP+LL +D WR L+LFC +N+A GC P ++Q + ED L
Sbjct: 1123 RARAMMIVFGNPHLLAVDDCWRQLILFCANNNAYFGCELPESIQNQEEEDPIRL 1176
BLAST of mRNA_M-pyrifera_M_contig116.3324.1 vs. uniprot
Match: A0A482VW40_9CUCU (RNA helicase (Fragment) n=1 Tax=Asbolus verrucosus TaxID=1661398 RepID=A0A482VW40_9CUCU) HSP 1 Score: 55.5 bits (132), Expect = 3.050e-6 Identity = 22/36 (61.11%), Postives = 30/36 (83.33%), Query Frame = 1
Query: 1 RAQALAIVVGNPNLLVGEDYWRDLLLFCRDNDAIRG 108
RA+AL IVVGNPN+L + YWR L+ +C+DN+A+RG
Sbjct: 757 RAKALQIVVGNPNILQHDKYWRSLITYCKDNNAMRG 792 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116.3324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig116.3324.1 >prot_M-pyrifera_M_contig116.3324.1 ID=prot_M-pyrifera_M_contig116.3324.1|Name=mRNA_M-pyrifera_M_contig116.3324.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp RAQALAIVVGNPNLLVGEDYWRDLLLFCRDNDAIRGCPCPALQAESREDKback to top mRNA from alignment at M-pyrifera_M_contig116:20780..21880+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig116.3324.1 ID=mRNA_M-pyrifera_M_contig116.3324.1|Name=mRNA_M-pyrifera_M_contig116.3324.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1101bp|location=Sequence derived from alignment at M-pyrifera_M_contig116:20780..21880+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig116:20780..21880+ >mRNA_M-pyrifera_M_contig116.3324.1 ID=mRNA_M-pyrifera_M_contig116.3324.1|Name=mRNA_M-pyrifera_M_contig116.3324.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig116:20780..21880+ (Macrocystis pyrifera P11B4 male)back to top |