mRNA_M-pyrifera_M_contig115994.3322.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig115994.3322.1 vs. uniprot
Match: D2V0F2_NAEGR (Predicted protein (Fragment) n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2V0F2_NAEGR) HSP 1 Score: 90.5 bits (223), Expect = 3.500e-20 Identity = 42/72 (58.33%), Postives = 57/72 (79.17%), Query Frame = 1
Query: 7 QKSSTLDFEVRDLGLVLNGSGKVVLSGVNGRLRHGRVTAVMGPSGAGKTTFLTTLAGKASYGKQTGRIFING 222
++ T+D +DLGLVL GSGK VL GV G ++HG++TAVMG SGAGK+TF+TTL+ +A YG Q G++F+NG
Sbjct: 32 EEQFTVDIGFQDLGLVLRGSGKKVLDGVTGEIKHGKLTAVMGLSGAGKSTFITTLSNRAYYGAQVGKVFVNG 103
BLAST of mRNA_M-pyrifera_M_contig115994.3322.1 vs. uniprot
Match: A0A6A5CAB0_NAEFO (ABC transporter domain-containing protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5CAB0_NAEFO) HSP 1 Score: 90.9 bits (224), Expect = 1.220e-19 Identity = 42/72 (58.33%), Postives = 58/72 (80.56%), Query Frame = 1
Query: 7 QKSSTLDFEVRDLGLVLNGSGKVVLSGVNGRLRHGRVTAVMGPSGAGKTTFLTTLAGKASYGKQTGRIFING 222
++ T+D +DLGLVL GSGK VL+GV G ++HG++TAVMG SGAGK+TF+TTL+ +A YG Q G++F+NG
Sbjct: 1034 EEQFTVDIGFQDLGLVLRGSGKKVLNGVTGEIKHGKLTAVMGLSGAGKSTFITTLSNRAYYGTQVGKVFVNG 1105
BLAST of mRNA_M-pyrifera_M_contig115994.3322.1 vs. uniprot
Match: A0A7S1CQC7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQC7_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 4.600e-19 Identity = 44/75 (58.67%), Postives = 58/75 (77.33%), Query Frame = 1
Query: 1 LTQKSSTLDFEVRDLGLVLNGSGKVVLSGVNGRLRHGRVTAVMGPSGAGKTTFLTTLAGKAS-YGKQTGRIFING 222
L K+ T+DF RDLGL L SG+ V++GV+GR+ H R+TA+MGPSGAGKT+FL+ L+G+AS YG TG + ING
Sbjct: 44 LGPKAFTIDFTFRDLGLKLIKSGRSVVAGVSGRILHSRLTAIMGPSGAGKTSFLSALSGRASSYGVTTGSVRING 118
BLAST of mRNA_M-pyrifera_M_contig115994.3322.1 vs. uniprot
Match: D2VK18_NAEGR (Abc transporter aaa ATPase n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VK18_NAEGR) HSP 1 Score: 88.2 bits (217), Expect = 1.070e-18 Identity = 42/68 (61.76%), Postives = 53/68 (77.94%), Query Frame = 1
Query: 19 TLDFEVRDLGLVLNGSGKVVLSGVNGRLRHGRVTAVMGPSGAGKTTFLTTLAGKASYGKQTGRIFING 222
T+D E +DLGL+L GSGK VL GV G++ HG++TAVMG SG GK+TF+TTLA +A YG G I+ING
Sbjct: 899 TVDIEFKDLGLILRGSGKKVLDGVTGKIEHGQLTAVMGLSGCGKSTFITTLANRAYYGTTVGSIYING 966
BLAST of mRNA_M-pyrifera_M_contig115994.3322.1 vs. uniprot
Match: UPI001CFE75E6 (uncharacterized protein n=2 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFE75E6) HSP 1 Score: 87.4 bits (215), Expect = 1.980e-18 Identity = 41/72 (56.94%), Postives = 55/72 (76.39%), Query Frame = 1
Query: 7 QKSSTLDFEVRDLGLVLNGSGKVVLSGVNGRLRHGRVTAVMGPSGAGKTTFLTTLAGKASYGKQTGRIFING 222
Q + T+D +LGL+L GSGK VL GV G ++HG++TAVMG SG GK+TF+TTLA +A YG Q G++F+NG
Sbjct: 162 QDNFTVDIGFENLGLILRGSGKKVLHGVTGEIKHGQLTAVMGLSGCGKSTFITTLANRAYYGTQVGKVFVNG 233
BLAST of mRNA_M-pyrifera_M_contig115994.3322.1 vs. uniprot
Match: A0A6A5BS35_NAEFO (ABC transporter domain-containing protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BS35_NAEFO) HSP 1 Score: 86.7 bits (213), Expect = 3.740e-18 Identity = 41/72 (56.94%), Postives = 55/72 (76.39%), Query Frame = 1
Query: 7 QKSSTLDFEVRDLGLVLNGSGKVVLSGVNGRLRHGRVTAVMGPSGAGKTTFLTTLAGKASYGKQTGRIFING 222
Q + T+D +LGL+L GSGK VL GV G ++HG++TAVMG SG GK+TF+TTLA +A YG Q G++F+NG
Sbjct: 1016 QDNFTVDIGFDNLGLILRGSGKKVLHGVTGEIKHGQLTAVMGLSGCGKSTFITTLANRAYYGTQVGKVFVNG 1087
BLAST of mRNA_M-pyrifera_M_contig115994.3322.1 vs. uniprot
Match: D2VN79_NAEGR (Abc transporter family protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VN79_NAEGR) HSP 1 Score: 85.5 bits (210), Expect = 9.530e-18 Identity = 40/68 (58.82%), Postives = 53/68 (77.94%), Query Frame = 1
Query: 19 TLDFEVRDLGLVLNGSGKVVLSGVNGRLRHGRVTAVMGPSGAGKTTFLTTLAGKASYGKQTGRIFING 222
T+D +DLGL L GSGK VL V G ++HG++TAVMG SGAGK+TF+TTL+ +A YG Q G++F+NG
Sbjct: 1095 TVDIGFKDLGLTLKGSGKRVLDSVTGEIKHGKLTAVMGLSGAGKSTFITTLSNRAYYGTQLGQVFVNG 1162
BLAST of mRNA_M-pyrifera_M_contig115994.3322.1 vs. uniprot
Match: A7T6N0_NEMVE (Predicted protein (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7T6N0_NEMVE) HSP 1 Score: 85.1 bits (209), Expect = 1.240e-17 Identity = 45/75 (60.00%), Postives = 55/75 (73.33%), Query Frame = 1
Query: 1 LTQKSSTLDFEVRDLGLVLN-GSGKVVLSGVNGRLRHGRVTAVMGPSGAGKTTFLTTLAGKASYGKQTGRIFING 222
+ K+ T+D +DL L LN G+ K VL GV G+++ G VTAVMGPSGAGKTTFL TL+GKA YG + G IFING
Sbjct: 448 IVPKNYTVDITFKDLNLKLNSGTKKTVLMGVTGKIKSGEVTAVMGPSGAGKTTFLNTLSGKAYYGTRGGEIFING 522
BLAST of mRNA_M-pyrifera_M_contig115994.3322.1 vs. uniprot
Match: UPI0013905EC1 (ABC transporter G family member 24 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI0013905EC1) HSP 1 Score: 85.1 bits (209), Expect = 1.290e-17 Identity = 45/75 (60.00%), Postives = 55/75 (73.33%), Query Frame = 1
Query: 1 LTQKSSTLDFEVRDLGLVLN-GSGKVVLSGVNGRLRHGRVTAVMGPSGAGKTTFLTTLAGKASYGKQTGRIFING 222
+ K+ T+D +DL L LN G+ K VL GV G+++ G VTAVMGPSGAGKTTFL TL+GKA YG + G IFING
Sbjct: 355 IVPKNYTVDITFKDLNLKLNSGTKKTVLMGVTGKIKSGEVTAVMGPSGAGKTTFLNTLSGKAYYGTRGGEIFING 429
BLAST of mRNA_M-pyrifera_M_contig115994.3322.1 vs. uniprot
Match: UPI001F03C264 (LOW QUALITY PROTEIN: ABC transporter G family member 28-like n=4 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03C264) HSP 1 Score: 83.2 bits (204), Expect = 6.110e-17 Identity = 44/69 (63.77%), Postives = 52/69 (75.36%), Query Frame = 1
Query: 19 TLDFEVRDLGLVL-NGSGKVVLSGVNGRLRHGRVTAVMGPSGAGKTTFLTTLAGKASYGKQTGRIFING 222
T+D +LGL L +G+ KVVL GV G +R G VTAVMGPSGAGKTTFL TL+GKA YG +TG+I NG
Sbjct: 319 TIDISFENLGLTLKSGNRKVVLQGVTGHVRSGEVTAVMGPSGAGKTTFLNTLSGKAYYGIRTGKILFNG 387 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115994.3322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig115994.3322.1 >prot_M-pyrifera_M_contig115994.3322.1 ID=prot_M-pyrifera_M_contig115994.3322.1|Name=mRNA_M-pyrifera_M_contig115994.3322.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp LTQKSSTLDFEVRDLGLVLNGSGKVVLSGVNGRLRHGRVTAVMGPSGAGKback to top mRNA from alignment at M-pyrifera_M_contig115994:340..561+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig115994.3322.1 ID=mRNA_M-pyrifera_M_contig115994.3322.1|Name=mRNA_M-pyrifera_M_contig115994.3322.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig115994:340..561+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig115994:340..561+ >mRNA_M-pyrifera_M_contig115994.3322.1 ID=mRNA_M-pyrifera_M_contig115994.3322.1|Name=mRNA_M-pyrifera_M_contig115994.3322.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig115994:340..561+ (Macrocystis pyrifera P11B4 male)back to top |